| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY213952 |
Definition |
Mycobacterium phage Petruchio, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
49531 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
90 |
%GC |
63.82 |
Number of singletons |
1 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APQ41844.1 | KY213952_p58 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 39234 | 39710 |
| APQ41833.1 | KY213952_p46 | hypothetical protein | phrog_1781 | unknown function | unknown function | -1 | 34838 | 35068 |
| APQ41834.1 | KY213952_p47 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 35099 | 35590 |
| APQ41857.1 | KY213952_p71 | exonuclease | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43230 | 44066 |
| APQ41794.1 | KY213952_p6 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 3029 | 3739 |
| APQ41827.1 | KY213952_p39 | hypothetical protein | phrog_1966 | unknown function | unknown function | -1 | 31298 | 31567 |
| APQ41829.1 | KY213952_p42 | hypothetical protein | phrog_1971 | unknown function | unknown function | -1 | 31823 | 32089 |
| APQ41811.1 | KY213952_p22 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 15516 | 16315 |
| APQ41805.1 | KY213952_p17 | head-tail connector | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 12878 | 13327 |
| APQ41826.1 | KY213952_p38 | integrase | phrog_95 | integrase | integration and excision | 1 | 29593 | 31176 |
| APQ41858.1 | KY213952_p72 | hypothetical protein | phrog_13709 | unknown function | unknown function | -1 | 44045 | 44260 |
| APQ41814.1 | KY213952_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19316 | 21373 |
| APQ41822.1 | KY213952_p34 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 27927 | 28247 |
| APQ41841.1 | KY213952_p54 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38087 | 38665 |
| APQ41816.1 | KY213952_p28 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 21511 | 23313 |
| APQ41871.1 | KY213952_p85 | hypothetical protein | phrog_15443 | unknown function | unknown function | -1 | 47959 | 48204 |
| APQ41808.1 | KY213952_p20 | head-tail connector | phrog_123 | tail terminator | connector | 1 | 14088 | 14534 |
| APQ41798.1 | KY213952_p10 | lysin B | phrog_102 | endolysin | lysis | 1 | 5701 | 6669 |
| APQ41876.1 | KY213952_p90 | hypothetical protein | phrog_21178 | unknown function | unknown function | -1 | 49124 | 49486 |
| APQ41879.1 | KY213952_p41 | hypothetical protein | phrog_1860 | unknown function | unknown function | -1 | 31731 | 31826 |
| APQ41843.1 | KY213952_p57 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 39103 | 39237 |
| APQ41835.1 | KY213952_p48 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35587 | 35769 |
| APQ41846.1 | KY213952_p60 | hypothetical protein | phrog_1546 | unknown function | unknown function | -1 | 39780 | 40166 |
| APQ41790.1 | KY213952_p1 | hypothetical protein | phrog_31705 | unknown function | unknown function | 1 | 609 | 749 |
| APQ41852.1 | KY213952_p66 | hypothetical protein | phrog_2507 | unknown function | unknown function | -1 | 41908 | 42081 |
| APQ41863.1 | KY213952_p77 | hypothetical protein | phrog_8497 | unknown function | unknown function | -1 | 46080 | 46247 |
| APQ41838.1 | KY213952_p51 | phosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36695 | 37462 |
| APQ41866.1 | KY213952_p80 | hypothetical protein | phrog_1387 | unknown function | unknown function | -1 | 46671 | 46874 |
| APQ41849.1 | KY213952_p63 | DnaB-like replicative helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40710 | 41531 |
| APQ41853.1 | KY213952_p67 | hypothetical protein | phrog_1705 | unknown function | unknown function | -1 | 42078 | 42200 |
| APQ41804.1 | KY213952_p16 | hypothetical protein | phrog_1857 | head-tail connector protein | connector | 1 | 12360 | 12878 |
| APQ41795.1 | KY213952_p7 | hypothetical protein | phrog_1718 | tail protein | tail | 1 | 3753 | 4013 |
| APQ41856.1 | KY213952_p70 | DNA binding domain protein | phrog_1763 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 43021 | 43203 |
| APQ41837.1 | KY213952_p50 | hypothetical protein | phrog_1782 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36550 | 36690 |
| APQ41875.1 | KY213952_p89 | hypothetical protein | phrog_14103 | unknown function | unknown function | -1 | 48797 | 49033 |
| APQ41815.1 | KY213952_p27 | hypothetical protein | phrog_1543 | minor tail protein | tail | 1 | 21392 | 21511 |
| APQ41796.1 | KY213952_p8 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 4021 | 4278 |
| APQ41848.1 | KY213952_p62 | NRDH glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 40435 | 40710 |
| APQ41854.1 | KY213952_p68 | HTH DNA binding domain protein | phrog_520 | unknown function | unknown function | -1 | 42197 | 42490 |
| APQ41850.1 | KY213952_p64 | hypothetical protein | phrog_5323 | unknown function | unknown function | -1 | 41535 | 41744 |
| APQ41862.1 | KY213952_p76 | hypothetical protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 45788 | 46087 |
| APQ41878.1 | KY213952_p55 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38454 | 38969 |
| APQ41847.1 | KY213952_p61 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 40163 | 40438 |
| APQ41793.1 | KY213952_p5 | tail protein | phrog_1197 | tail protein | tail | 1 | 1949 | 3019 |
| APQ41874.1 | KY213952_p88 | hypothetical protein | phrog_828 | unknown function | unknown function | -1 | 48515 | 48718 |
| APQ41828.1 | KY213952_p40 | hypothetical protein | phrog_2035 | unknown function | unknown function | -1 | 31564 | 31734 |
| APQ41868.1 | KY213952_p82 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 47059 | 47226 |
| APQ41830.1 | KY213952_p43 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 32086 | 32448 |
| APQ41803.1 | KY213952_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 11274 | 12281 |
| APQ41825.1 | KY213952_p37 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29238 | 29522 |
| APQ41809.1 | KY213952_p21 | major tail protein | phrog_117 | major tail protein | tail | 1 | 14543 | 15394 |
| APQ41867.1 | KY213952_p81 | hypothetical protein | phrog_1155 | unknown function | unknown function | -1 | 46871 | 47059 |
| APQ41842.1 | KY213952_p56 | hypothetical protein | phrog_1783 | unknown function | unknown function | -1 | 38948 | 39106 |
| APQ41806.1 | KY213952_p18 | head-tail connector | phrog_320 | head closure Hc1 | connector | 1 | 13327 | 13689 |
| APQ41821.1 | KY213952_p33 | D-ala D-ala carboxypeptidase | phrog_382 | minor tail protein with lysin activity | tail | 1 | 26356 | 27834 |
| APQ41864.1 | KY213952_p78 | hypothetical protein | phrog_1720 | unknown function | unknown function | -1 | 46244 | 46510 |
| APQ41839.1 | KY213952_p52 | hypothetical protein | phrog_1503 | unknown function | unknown function | -1 | 37459 | 37638 |
| APQ41832.1 | KY213952_p45 | DNA polymerase 1 | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 32972 | 34801 |
| APQ41791.1 | KY213952_p2 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 749 | 1045 |
| APQ41819.1 | KY213952_p31 | hypothetical protein | phrog_1397 | unknown function | unknown function | 1 | 24138 | 24485 |
| APQ41851.1 | KY213952_p65 | hypothetical protein | phrog_2864 | unknown function | unknown function | -1 | 41741 | 41908 |
| APQ41818.1 | KY213952_p30 | hypothetical protein | phrog_981 | minor tail protein | tail | 1 | 23794 | 24141 |
| APQ41813.1 | KY213952_p25 | HNH endonuclease | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 18798 | 19292 |
| APQ41792.1 | KY213952_p3 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 1080 | 1514 |
| APQ41810.1 | KY213952_p23 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 15516 | 15893 |
| APQ41870.1 | KY213952_p84 | hypothetical protein | singleton | unknown function | unknown function | -1 | 47531 | 47854 |
| APQ41817.1 | KY213952_p29 | hypothetical protein | phrog_352 | minor tail protein | tail | 1 | 23351 | 23797 |
| APQ41799.1 | KY213952_p11 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 6689 | 8377 |
| APQ41812.1 | KY213952_p24 | tape measure | phrog_305 | tail length tape measure protein | tail | 1 | 16327 | 18795 |
| APQ41823.1 | KY213952_p35 | hypothetical protein | phrog_1560 | unknown function | unknown function | 1 | 28257 | 28448 |
| APQ41820.1 | KY213952_p32 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 24510 | 26363 |
| APQ41801.1 | KY213952_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 9813 | 10694 |
| APQ41877.1 | KY213952_p4 | hypothetical protein | phrog_7087 | unknown function | unknown function | 1 | 1593 | 1883 |
| APQ41865.1 | KY213952_p79 | hypothetical protein | phrog_26170 | unknown function | unknown function | -1 | 46507 | 46650 |
| APQ41873.1 | KY213952_p87 | hypothetical protein | phrog_33090 | unknown function | unknown function | -1 | 48312 | 48518 |
| APQ41869.1 | KY213952_p83 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 47223 | 47510 |
| APQ41802.1 | KY213952_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 10752 | 11264 |
| APQ41831.1 | KY213952_p44 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 32471 | 32947 |
| APQ41840.1 | KY213952_p53 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 37635 | 38090 |
| APQ41872.1 | KY213952_p86 | hypothetical protein | phrog_2212 | unknown function | unknown function | -1 | 48224 | 48307 |
| APQ41836.1 | KY213952_p49 | hypothetical protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35766 | 36557 |
| APQ41860.1 | KY213952_p74 | hypothetical protein | phrog_1809 | unknown function | unknown function | -1 | 44577 | 44972 |
| APQ41807.1 | KY213952_p19 | head-tail connector | phrog_321 | tail completion or Neck1 protein | connector | 1 | 13689 | 14084 |
| APQ41845.1 | KY213952_p59 | hypothetical protein | phrog_1019 | unknown function | unknown function | -1 | 39697 | 39783 |
| APQ41855.1 | KY213952_p69 | hypothetical protein | phrog_2184 | unknown function | unknown function | -1 | 42487 | 43017 |
| APQ41859.1 | KY213952_p73 | hypothetical protein | phrog_1584 | unknown function | unknown function | -1 | 44257 | 44580 |
| APQ41824.1 | KY213952_p36 | hypothetical protein | phrog_12500 | minor tail protein | tail | 1 | 28445 | 28990 |
| APQ41800.1 | KY213952_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 8374 | 9816 |
| APQ41861.1 | KY213952_p75 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 45014 | 45700 |
| APQ41797.1 | KY213952_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 4278 | 5711 |