| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY250035 |
Definition |
Pectobacterium phage PP47, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Pektosvirus; unclassified Pektosvirus; Pectobacterium virus PP47. |
DB of origin |
NUCCORE |
Length |
40844 |
Host Name |
Pectobacterium carotovorum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
43 |
%GC |
48.9 |
Number of singletons |
3 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APW79753.1 | KY250035_p8 | hypothetical protein | phrog_36492 | unknown function | unknown function | 1 | 8251 | 8493 |
| APW79747.1 | KY250035_p2 | hypothetical protein | phrog_25044 | unknown function | unknown function | 1 | 1704 | 1991 |
| APW79755.1 | KY250035_p10 | nucleotide kinase | phrog_4943 | unknown function | unknown function | 1 | 9217 | 9876 |
| APW79788.1 | KY250035_p42 | spanin | singleton | unknown function | unknown function | 1 | 38398 | 38601 |
| APW79750.1 | KY250035_p5 | hypothetical protein | phrog_9238 | unknown function | unknown function | 1 | 6163 | 6561 |
| APW79756.1 | KY250035_p11 | hypothetical protein | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 9866 | 10042 |
| APW79779.1 | KY250035_p34 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 25546 | 27927 |
| APW79778.1 | KY250035_p33 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 24933 | 25523 |
| APW79763.1 | KY250035_p18 | DNA-binding protein | phrog_2254 | unknown function | unknown function | 1 | 14122 | 14418 |
| APW79769.1 | KY250035_p24 | hypothetical protein | phrog_2251 | unknown function | unknown function | 1 | 18119 | 18385 |
| APW79781.1 | KY250035_p36 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 28430 | 29011 |
| APW79762.1 | KY250035_p17 | hypothetical protein | phrog_1950 | unknown function | unknown function | 1 | 13887 | 14099 |
| APW79771.1 | KY250035_p26 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 19589 | 19834 |
| APW79764.1 | KY250035_p19 | hypothetical protein | phrog_4023 | unknown function | unknown function | 1 | 14459 | 14884 |
| APW79772.1 | KY250035_p27 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 19839 | 20264 |
| APW79768.1 | KY250035_p23 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 17913 | 18122 |
| APW79787.1 | KY250035_p40 | DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 37864 | 38133 |
| APW79773.1 | KY250035_p28 | hypothetical protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 20544 | 20819 |
| APW79786.1 | KY250035_p41 | endopeptidase Rz | phrog_1327 | Rz-like spanin | lysis | 1 | 38187 | 38696 |
| APW79780.1 | KY250035_p35 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 28017 | 28427 |
| APW79770.1 | KY250035_p25 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 18372 | 19313 |
| APW79754.1 | KY250035_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8535 | 8693 |
| APW79785.1 | KY250035_p43 | DNA packaging protein B | phrog_38 | terminase large subunit | head and packaging | 1 | 38680 | 40419 |
| APW79775.1 | KY250035_p30 | capsid assembly protein | phrog_1052 | head assembly | head and packaging | 1 | 22515 | 23447 |
| APW79749.1 | KY250035_p4 | DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 3332 | 6004 |
| APW79761.1 | KY250035_p16 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 12015 | 13757 |
| APW79776.1 | KY250035_p31 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 23521 | 24561 |
| APW79766.1 | KY250035_p21 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 15430 | 17613 |
| APW79752.1 | KY250035_p7 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7047 | 8150 |
| APW79748.1 | KY250035_p3 | seryl-threonyl protein kinase | phrog_2828 | serine-threonine kinase | other | 1 | 2087 | 3163 |
| APW79765.1 | KY250035_p20 | nucleotidyltransferase | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 14903 | 15433 |
| APW79758.1 | KY250035_p13 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10847 | 11305 |
| APW79746.1 | KY250035_p1 | S-adenosyl-L-methionine hydrolase | phrog_2226 | SAM-dependent methyltransferase | other | 1 | 1077 | 1520 |
| APW79784.1 | KY250035_p39 | tail spike protein | phrog_8460 | tail fiber protein | tail | 1 | 35395 | 37656 |
| APW79777.1 | KY250035_p32 | hypothetical protein | phrog_7473 | unknown function | unknown function | 1 | 24624 | 24860 |
| APW79782.1 | KY250035_p37 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 29028 | 31289 |
| APW79774.1 | KY250035_p29 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 20832 | 22448 |
| APW79783.1 | KY250035_p38 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 31314 | 35330 |
| APW79760.1 | KY250035_p15 | N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | 1 | 11540 | 11989 |
| APW79767.1 | KY250035_p22 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 17641 | 17910 |
| APW79757.1 | KY250035_p12 | ssDNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 10143 | 10847 |
| APW79759.1 | KY250035_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11308 | 11547 |
| APW79751.1 | KY250035_p6 | hypothetical protein | phrog_2490 | unknown function | unknown function | 1 | 6664 | 6837 |