Genomic map of Pectobacterium phage PP47 (KY250035)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY250035
Definition
Pectobacterium phage PP47, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Pektosvirus; unclassified Pektosvirus; Pectobacterium virus PP47.
DB of origin
NUCCORE
Length
40844
Host Name
Pectobacterium carotovorum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
43
%GC
48.9
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APW79753.1 KY250035_p8 hypothetical protein phrog_36492 unknown function unknown function 1 8251 8493
APW79747.1 KY250035_p2 hypothetical protein phrog_25044 unknown function unknown function 1 1704 1991
APW79755.1 KY250035_p10 nucleotide kinase phrog_4943 unknown function unknown function 1 9217 9876
APW79788.1 KY250035_p42 spanin singleton unknown function unknown function 1 38398 38601
APW79750.1 KY250035_p5 hypothetical protein phrog_9238 unknown function unknown function 1 6163 6561
APW79756.1 KY250035_p11 hypothetical protein phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 9866 10042
APW79779.1 KY250035_p34 tail tubular protein B phrog_457 tail protein tail 1 25546 27927
APW79778.1 KY250035_p33 tail tubular protein A phrog_446 tail protein tail 1 24933 25523
APW79763.1 KY250035_p18 DNA-binding protein phrog_2254 unknown function unknown function 1 14122 14418
APW79769.1 KY250035_p24 hypothetical protein phrog_2251 unknown function unknown function 1 18119 18385
APW79781.1 KY250035_p36 internal virion protein B phrog_805 internal virion protein head and packaging 1 28430 29011
APW79762.1 KY250035_p17 hypothetical protein phrog_1950 unknown function unknown function 1 13887 14099
APW79771.1 KY250035_p26 hypothetical protein phrog_1447 unknown function unknown function 1 19589 19834
APW79764.1 KY250035_p19 hypothetical protein phrog_4023 unknown function unknown function 1 14459 14884
APW79772.1 KY250035_p27 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 19839 20264
APW79768.1 KY250035_p23 hypothetical protein phrog_1334 unknown function unknown function 1 17913 18122
APW79787.1 KY250035_p40 DNA packaging protein A phrog_1351 terminase small subunit head and packaging 1 37864 38133
APW79773.1 KY250035_p28 hypothetical protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 20544 20819
APW79786.1 KY250035_p41 endopeptidase Rz phrog_1327 Rz-like spanin lysis 1 38187 38696
APW79780.1 KY250035_p35 internal virion protein A phrog_308 internal virion protein head and packaging 1 28017 28427
APW79770.1 KY250035_p25 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 18372 19313
APW79754.1 KY250035_p9 hypothetical protein singleton unknown function unknown function 1 8535 8693
APW79785.1 KY250035_p43 DNA packaging protein B phrog_38 terminase large subunit head and packaging 1 38680 40419
APW79775.1 KY250035_p30 capsid assembly protein phrog_1052 head assembly head and packaging 1 22515 23447
APW79749.1 KY250035_p4 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 3332 6004
APW79761.1 KY250035_p16 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 12015 13757
APW79776.1 KY250035_p31 major capsid protein phrog_267 major head protein head and packaging 1 23521 24561
APW79766.1 KY250035_p21 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 15430 17613
APW79752.1 KY250035_p7 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 7047 8150
APW79748.1 KY250035_p3 seryl-threonyl protein kinase phrog_2828 serine-threonine kinase other 1 2087 3163
APW79765.1 KY250035_p20 nucleotidyltransferase phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 14903 15433
APW79758.1 KY250035_p13 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 10847 11305
APW79746.1 KY250035_p1 S-adenosyl-L-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other 1 1077 1520
APW79784.1 KY250035_p39 tail spike protein phrog_8460 tail fiber protein tail 1 35395 37656
APW79777.1 KY250035_p32 hypothetical protein phrog_7473 unknown function unknown function 1 24624 24860
APW79782.1 KY250035_p37 internal virion protein C phrog_1339 internal virion protein head and packaging 1 29028 31289
APW79774.1 KY250035_p29 head-tail connector protein phrog_449 head-tail adaptor connector 1 20832 22448
APW79783.1 KY250035_p38 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 31314 35330
APW79760.1 KY250035_p15 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis 1 11540 11989
APW79767.1 KY250035_p22 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 17641 17910
APW79757.1 KY250035_p12 ssDNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 10143 10847
APW79759.1 KY250035_p14 hypothetical protein singleton unknown function unknown function 1 11308 11547
APW79751.1 KY250035_p6 hypothetical protein phrog_2490 unknown function unknown function 1 6664 6837