| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY319168 |
Definition |
Mycobacterium phage CrystalP, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Kostyavirus; unclassified Kostyavirus. |
DB of origin |
NUCCORE |
Length |
76483 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
143 |
%GC |
62.98 |
Number of singletons |
0 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APU02945.1 | KY319168_p139 | hypothetical protein | phrog_7581 | unknown function | unknown function | -1 | 74630 | 74833 |
| APU02964.1 | KY319168_p56 | hypothetical protein | phrog_3071 | unknown function | unknown function | 1 | 41127 | 41225 |
| APU02915.1 | KY319168_p101 | hypothetical protein | phrog_1454 | unknown function | unknown function | 1 | 61530 | 61727 |
| APU02969.1 | KY319168_p39 | hypothetical protein | phrog_33228 | unknown function | unknown function | -1 | 34133 | 34249 |
| APU02862.1 | KY319168_p40 | lsr2-like family protein | phrog_1223 | nucloid associated Lsr2-like | DNA, RNA and nucleotide metabolism | -1 | 34252 | 34638 |
| APU02958.1 | KY319168_p37 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 33135 | 33380 |
| APU02873.1 | KY319168_p57 | hypothetical protein | phrog_2852 | unknown function | unknown function | 1 | 41222 | 41359 |
| APU02868.1 | KY319168_p49 | hypothetical protein | phrog_2815 | unknown function | unknown function | -1 | 36984 | 37130 |
| APU02935.1 | KY319168_p126 | helix-turn-helix DNA binding protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 69793 | 70056 |
| APU02947.1 | KY319168_p142 | hypothetical protein | phrog_2904 | unknown function | unknown function | 1 | 75269 | 75616 |
| APU02898.1 | KY319168_p82 | hypothetical protein | phrog_1821 | transcriptional regulator WhiB-like | transcription regulation | 1 | 51911 | 52186 |
| APU02895.1 | KY319168_p79 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 50157 | 50489 |
| APU02946.1 | KY319168_p140 | hypothetical protein | phrog_2795 | unknown function | unknown function | -1 | 74839 | 75036 |
| APU02905.1 | KY319168_p90 | RNA ligase | phrog_968 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 54914 | 56239 |
| APU02911.1 | KY319168_p97 | hypothetical protein | phrog_1568 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 58438 | 58980 |
| APU02858.1 | KY319168_p34 | hypothetical protein | phrog_2424 | unknown function | unknown function | 1 | 31523 | 31861 |
| APU02863.1 | KY319168_p42 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 34880 | 35347 |
| APU02852.1 | KY319168_p28 | hypothetical protein | phrog_553 | minor tail protein | tail | 1 | 27524 | 28468 |
| APU02841.1 | KY319168_p17 | head-to-tail connector protein | phrog_2805 | minor tail protein | tail | 1 | 10590 | 10970 |
| APU02961.1 | KY319168_p47 | hypothetical protein | phrog_2893 | unknown function | unknown function | -1 | 36521 | 36757 |
| APU02951.1 | KY319168_p104 | helix-turn-helix DNA binding protein | phrog_1969 | unknown function | unknown function | 1 | 62334 | 62645 |
| APU02835.1 | KY319168_p10 | hypothetical protein | phrog_2845 | unknown function | unknown function | 1 | 4978 | 5199 |
| APU02888.1 | KY319168_p72 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 47783 | 48154 |
| APU02899.1 | KY319168_p83 | hypothetical protein | phrog_2747 | unknown function | unknown function | 1 | 52161 | 52382 |
| APU02887.1 | KY319168_p71 | hypothetical protein | phrog_1389 | unknown function | unknown function | 1 | 47412 | 47780 |
| APU02879.1 | KY319168_p63 | hypothetical protein | phrog_2147 | unknown function | unknown function | 1 | 43607 | 43840 |
| APU02943.1 | KY319168_p137 | hypothetical protein | phrog_1438 | unknown function | unknown function | -1 | 74221 | 74394 |
| APU02865.1 | KY319168_p45 | hypothetical protein | phrog_4396 | unknown function | unknown function | -1 | 36229 | 36357 |
| APU02890.1 | KY319168_p74 | hypothetical protein | phrog_2793 | unknown function | unknown function | 1 | 48330 | 48563 |
| APU02877.1 | KY319168_p61 | hypothetical protein | phrog_2744 | unknown function | unknown function | 1 | 43168 | 43473 |
| APU02922.1 | KY319168_p111 | hypothetical protein | phrog_801 | dATP / dGTP pyrophosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 64738 | 65331 |
| APU02954.1 | KY319168_p89 | hypothetical protein | phrog_2844 | unknown function | unknown function | 1 | 54819 | 54917 |
| APU02861.1 | KY319168_p38 | HNH endonuclease | phrog_826 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 33542 | 33934 |
| APU02883.1 | KY319168_p67 | hypothetical protein | phrog_572 | unknown function | unknown function | 1 | 45513 | 45923 |
| APU02882.1 | KY319168_p66 | exonuclease | phrog_466 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 44548 | 45516 |
| APU02913.1 | KY319168_p99 | ssDNA binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 60193 | 60633 |
| APU02831.1 | KY319168_p6 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 1057 | 1518 |
| APU02941.1 | KY319168_p134 | hypothetical protein | phrog_2287 | unknown function | unknown function | -1 | 73023 | 73229 |
| APU02840.1 | KY319168_p16 | head-to-tail connector protein | phrog_1531 | head closure | connector | 1 | 10258 | 10593 |
| APU02953.1 | KY319168_p108 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 63783 | 64046 |
| APU02920.1 | KY319168_p109 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | 1 | 64057 | 64431 |
| APU02839.1 | KY319168_p15 | head-to-tail connector protein | phrog_442 | head-tail adaptor | connector | 1 | 9679 | 10245 |
| APU02875.1 | KY319168_p59 | hypothetical protein | phrog_2463 | unknown function | unknown function | 1 | 42203 | 42349 |
| APU02846.1 | KY319168_p22 | tape measure protein | phrog_2723 | tail length tape measure protein | tail | 1 | 13334 | 18067 |
| APU02955.1 | KY319168_p91 | helix-turn-helix DNA binding protein | phrog_1590 | unknown function | unknown function | 1 | 56276 | 57097 |
| APU02848.1 | KY319168_p24 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 19746 | 21425 |
| APU02902.1 | KY319168_p86 | hypothetical protein | phrog_2894 | unknown function | unknown function | 1 | 53057 | 53251 |
| APU02856.1 | KY319168_p32 | lysin A | phrog_317 | endolysin | lysis | 1 | 29641 | 31143 |
| APU02936.1 | KY319168_p127 | hypothetical protein | phrog_2579 | ParB C-terminal domain | DNA, RNA and nucleotide metabolism | -1 | 70053 | 70442 |
| APU02968.1 | KY319168_p143 | hypothetical protein | phrog_2762 | unknown function | unknown function | 1 | 75691 | 75912 |
| APU02886.1 | KY319168_p70 | hypothetical protein | phrog_2771 | unknown function | unknown function | 1 | 46942 | 47412 |
| APU02952.1 | KY319168_p105 | HNH endonuclease | phrog_959 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 62698 | 62988 |
| APU02967.1 | KY319168_p141 | hypothetical protein | phrog_8479 | unknown function | unknown function | -1 | 75040 | 75204 |
| APU02959.1 | KY319168_p41 | hypothetical protein | phrog_3481 | unknown function | unknown function | -1 | 34686 | 34883 |
| APU02870.1 | KY319168_p51 | hypothetical protein | phrog_2847 | unknown function | unknown function | -1 | 37812 | 38114 |
| APU02897.1 | KY319168_p81 | hypothetical protein | phrog_1091 | unknown function | unknown function | 1 | 51741 | 51929 |
| APU02857.1 | KY319168_p33 | holin | phrog_526 | holin | lysis | 1 | 31147 | 31530 |
| APU02950.1 | KY319168_p135 | hypothetical protein | phrog_2883 | unknown function | unknown function | -1 | 73275 | 73829 |
| APU02834.1 | KY319168_p9 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 2303 | 4966 |
| APU02908.1 | KY319168_p94 | hypothetical protein | phrog_889 | unknown function | unknown function | 1 | 57526 | 57978 |
| APU02828.1 | KY319168_p3 | hypothetical protein | phrog_2829 | unknown function | unknown function | 1 | 446 | 604 |
| APU02956.1 | KY319168_p117 | hypothetical protein | phrog_2279 | unknown function | unknown function | 1 | 67623 | 67835 |
| APU02923.1 | KY319168_p112 | DNA polymerase I | phrog_403 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 65342 | 66127 |
| APU02876.1 | KY319168_p60 | hypothetical protein | phrog_2800 | unknown function | unknown function | 1 | 42346 | 42624 |
| APU02916.1 | KY319168_p102 | hypothetical protein | phrog_2785 | unknown function | unknown function | 1 | 61724 | 62080 |
| APU02892.1 | KY319168_p76 | hypothetical protein | phrog_740 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 48970 | 49287 |
| APU02851.1 | KY319168_p27 | minor tail protein | phrog_382 | minor tail protein with lysin activity | tail | 1 | 24677 | 27523 |
| APU02867.1 | KY319168_p48 | hypothetical protein | phrog_2702 | unknown function | unknown function | -1 | 36750 | 36965 |
| APU02962.1 | KY319168_p54 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 39602 | 40375 |
| APU02914.1 | KY319168_p100 | ClpP protease | phrog_94 | head maturation protease | head and packaging | 1 | 60749 | 61528 |
| APU02838.1 | KY319168_p14 | hypothetical protein | phrog_2796 | head-tail connector protein | connector | 1 | 9488 | 9679 |
| APU02926.1 | KY319168_p115 | hypothetical protein | phrog_2965 | unknown function | unknown function | 1 | 67333 | 67470 |
| APU02837.1 | KY319168_p13 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 7927 | 9420 |
| APU02836.1 | KY319168_p12 | capsid maturation protease | phrog_2753 | head maturation protease | head and packaging | 1 | 6745 | 7839 |
| APU02896.1 | KY319168_p80 | dsDNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 50482 | 51744 |
| APU02853.1 | KY319168_p29 | hypothetical protein | phrog_644 | unknown function | unknown function | 1 | 28549 | 28977 |
| APU02925.1 | KY319168_p114 | DNA recombinase | phrog_97 | UvsX-like recombinase | other | 1 | 66374 | 67336 |
| APU02843.1 | KY319168_p19 | major tail protein | phrog_476 | major tail protein | tail | 1 | 11379 | 12350 |
| APU02900.1 | KY319168_p84 | hypothetical protein | phrog_9963 | unknown function | unknown function | 1 | 52375 | 52701 |
| APU02929.1 | KY319168_p120 | hypothetical protein | phrog_2764 | unknown function | unknown function | 1 | 68477 | 68644 |
| APU02901.1 | KY319168_p85 | holliday junction resolvase | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 52698 | 53060 |
| APU02889.1 | KY319168_p73 | hypothetical protein | phrog_1622 | unknown function | unknown function | 1 | 48154 | 48327 |
| APU02880.1 | KY319168_p64 | hypothetical protein | phrog_2221 | unknown function | unknown function | 1 | 43840 | 44001 |
| APU02957.1 | KY319168_p118 | hypothetical protein | phrog_3062 | unknown function | unknown function | 1 | 67816 | 68070 |
| APU02942.1 | KY319168_p136 | hypothetical protein | phrog_3174 | unknown function | unknown function | -1 | 73833 | 74216 |
| APU02906.1 | KY319168_p92 | WhiB family transcription factor | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 57094 | 57354 |
| APU02885.1 | KY319168_p69 | hypothetical protein | phrog_2750 | unknown function | unknown function | 1 | 46631 | 46942 |
| APU02944.1 | KY319168_p138 | hypothetical protein | phrog_2772 | unknown function | unknown function | -1 | 74391 | 74627 |
| APU02869.1 | KY319168_p50 | hypothetical protein | phrog_2759 | unknown function | unknown function | -1 | 37130 | 37525 |
| APU02917.1 | KY319168_p103 | hypothetical protein | phrog_2757 | unknown function | unknown function | 1 | 62081 | 62329 |
| APU02933.1 | KY319168_p124 | hypothetical protein | phrog_2897 | unknown function | unknown function | 1 | 69138 | 69269 |
| APU02842.1 | KY319168_p18 | hypothetical protein | phrog_813 | head-tail adaptor | connector | 1 | 10948 | 11352 |
| APU02921.1 | KY319168_p110 | hypothetical protein | phrog_4826 | unknown function | unknown function | 1 | 64431 | 64748 |
| APU02965.1 | KY319168_p1 | hypothetical protein | phrog_3456 | unknown function | unknown function | 1 | 10 | 270 |
| APU02966.1 | KY319168_p11 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 5186 | 6742 |
| APU02924.1 | KY319168_p113 | hypothetical protein | phrog_1941 | unknown function | unknown function | 1 | 66124 | 66366 |
| APU02949.1 | KY319168_p129 | hypothetical protein | phrog_3034 | unknown function | unknown function | -1 | 70883 | 71251 |
| APU02864.1 | KY319168_p44 | hypothetical protein | phrog_647 | unknown function | unknown function | -1 | 35825 | 36121 |
| APU02891.1 | KY319168_p75 | HNH endonuclease | phrog_289 | GTP-binding domain | other | 1 | 48560 | 48973 |
| APU02893.1 | KY319168_p77 | hypothetical protein | phrog_1673 | unknown function | unknown function | 1 | 49277 | 49513 |
| APU02963.1 | KY319168_p55 | helix-turn-helix DNA binding protein | phrog_2745 | transcriptional repressor | transcription regulation | -1 | 40470 | 40901 |
| APU02845.1 | KY319168_p20 | tail assembly chaperone | phrog_978 | tail assembly chaperone | tail | 1 | 12398 | 13341 |
| APU02847.1 | KY319168_p23 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 18097 | 19758 |
| APU02894.1 | KY319168_p78 | hypothetical protein | phrog_1882 | unknown function | unknown function | 1 | 49510 | 50160 |
| APU02910.1 | KY319168_p96 | hypothetical protein | phrog_2788 | unknown function | unknown function | 1 | 58106 | 58441 |
| APU02860.1 | KY319168_p36 | hypothetical protein | phrog_726 | unknown function | unknown function | 1 | 32712 | 33128 |
| APU02832.1 | KY319168_p7 | hypothetical protein | phrog_2142 | unknown function | unknown function | 1 | 1511 | 1855 |
| APU02855.1 | KY319168_p31 | hypothetical protein | phrog_411 | unknown function | unknown function | 1 | 29283 | 29567 |
| APU02859.1 | KY319168_p35 | lysin B | phrog_102 | endolysin | lysis | 1 | 31858 | 32715 |
| APU02930.1 | KY319168_p121 | hypothetical protein | phrog_2823 | unknown function | unknown function | 1 | 68628 | 68828 |
| APU02866.1 | KY319168_p46 | hypothetical protein | phrog_861 | site-specific recombination directionality factor RDF | integration and excision | -1 | 36357 | 36524 |
| APU02948.1 | KY319168_p128 | hypothetical protein | phrog_2942 | unknown function | unknown function | -1 | 70561 | 70839 |
| APU02854.1 | KY319168_p30 | helix-turn-helix DNA binding protein | phrog_686 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 28974 | 29150 |
| APU02934.1 | KY319168_p125 | hypothetical protein | phrog_3016 | unknown function | unknown function | 1 | 69280 | 69414 |
| APU02830.1 | KY319168_p5 | hypothetical protein | phrog_3858 | unknown function | unknown function | 1 | 783 | 1064 |
| APU02909.1 | KY319168_p95 | hypothetical protein | phrog_7833 | unknown function | unknown function | 1 | 57982 | 58104 |
| APU02931.1 | KY319168_p122 | hypothetical protein | phrog_2296 | unknown function | unknown function | 1 | 68825 | 68962 |
| APU02850.1 | KY319168_p26 | minor tail protein | phrog_346 | minor tail protein | tail | 1 | 22284 | 24680 |
| APU02918.1 | KY319168_p106 | hypothetical protein | phrog_15491 | unknown function | unknown function | 1 | 62961 | 63077 |
| APU02827.1 | KY319168_p2 | hypothetical protein | phrog_4110 | unknown function | unknown function | 1 | 267 | 449 |
| APU02903.1 | KY319168_p87 | polynucleotide kinase | phrog_505 | polynucleotide kinase | other | 1 | 53406 | 54347 |
| APU02919.1 | KY319168_p107 | hypothetical protein | phrog_2846 | unknown function | unknown function | 1 | 63562 | 63786 |
| APU02871.1 | KY319168_p52 | integrase | phrog_1 | integrase | integration and excision | 1 | 38365 | 39246 |
| APU02960.1 | KY319168_p43 | hypothetical protein | phrog_722 | unknown function | unknown function | -1 | 35344 | 35832 |
| APU02904.1 | KY319168_p88 | hypothetical protein | phrog_2495 | unknown function | unknown function | 1 | 54454 | 54822 |
| APU02912.1 | KY319168_p98 | methyltransferase | phrog_67 | DNA methyltransferase | other | 1 | 58977 | 60200 |
| APU02927.1 | KY319168_p116 | hypothetical protein | phrog_2755 | unknown function | unknown function | 1 | 67457 | 67630 |
| APU02928.1 | KY319168_p119 | hypothetical protein | phrog_2174 | unknown function | unknown function | 1 | 68019 | 68480 |
| APU02937.1 | KY319168_p130 | hypothetical protein | phrog_1915 | unknown function | unknown function | -1 | 71248 | 71706 |
| APU02849.1 | KY319168_p25 | minor tail protein | phrog_732 | minor tail protein | tail | 1 | 21434 | 22267 |
| APU02872.1 | KY319168_p53 | hypothetical protein | phrog_2842 | unknown function | unknown function | 1 | 39385 | 39624 |
| APU02881.1 | KY319168_p65 | hypothetical protein | phrog_762 | unknown function | unknown function | 1 | 44222 | 44551 |
| APU02939.1 | KY319168_p132 | hypothetical protein | phrog_4006 | unknown function | unknown function | -1 | 72056 | 72571 |
| APU02907.1 | KY319168_p93 | hypothetical protein | phrog_2853 | unknown function | unknown function | 1 | 57371 | 57529 |
| APU02940.1 | KY319168_p133 | hypothetical protein | phrog_8217 | unknown function | unknown function | -1 | 72592 | 72903 |
| APU02874.1 | KY319168_p58 | hypothetical protein | phrog_923 | unknown function | unknown function | 1 | 41356 | 42201 |
| APU02833.1 | KY319168_p8 | hypothetical protein | phrog_2202 | unknown function | unknown function | -1 | 1956 | 2267 |
| APU02829.1 | KY319168_p4 | hypothetical protein | phrog_2775 | unknown function | unknown function | 1 | 601 | 786 |
| APU02884.1 | KY319168_p68 | ERF family ssDNA binding protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45916 | 46638 |
| APU02938.1 | KY319168_p131 | hypothetical protein | phrog_1587 | unknown function | unknown function | -1 | 71721 | 72050 |
| APU02844.1 | KY319168_p21 | tail assembly chaperone | phrog_621 | tail assembly chaperone | tail | 1 | 12398 | 12931 |
| APU02932.1 | KY319168_p123 | hypothetical protein | phrog_2925 | unknown function | unknown function | 1 | 68959 | 69138 |
| APU02878.1 | KY319168_p62 | hypothetical protein | phrog_3463 | unknown function | unknown function | 1 | 43492 | 43599 |