functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
KY363465 |
Definition |
Providencia phage vB_PreS_PR1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Priunavirus; Providencia virus PR1. |
DB of origin |
NUCCORE |
Length |
118537 |
Host Name |
Providencia |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
157 |
%GC |
39.51 |
Number of singletons |
69 |
Number of paralogs |
1 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
AQT25319.1 | KY363465_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16746 | 17039 |
AQT25309.1 | KY363465_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15516 | 15842 |
AQT25248.1 | KY363465_p47 | holin | phrog_860 | holin | lysis | -1 | 22523 | 23191 |
AQT25292.1 | KY363465_p96 | hypothetical protein | singleton | unknown function | unknown function | -1 | 45406 | 45783 |
AQT25226.1 | KY363465_p18 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11044 | 11940 |
AQT25225.1 | KY363465_p131 | exonuclease subunit 1 | phrog_100 | SbcD-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 75217 | 76194 |
AQT25237.2 | KY363465_p8 | hypothetical protein | phrog_16673 | unknown function | unknown function | 1 | 5468 | 6547 |
AQT25334.1 | KY363465_p128 | hypothetical protein | singleton | unknown function | unknown function | 1 | 73663 | 73917 |
AQT25257.1 | KY363465_p62 | DNA primase | phrog_849 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 29374 | 29895 |
AQT25234.1 | KY363465_p120 | hypothetical protein | phrog_323 | transcriptional regulator, D5-like | transcription regulation | 1 | 64656 | 65444 |
AQT25345.1 | KY363465_p21 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13295 | 13513 |
AQT25348.1 | KY363465_p72 | hypothetical protein | phrog_28360 | unknown function | unknown function | -1 | 33757 | 33966 |
AQT25219.1 | KY363465_p152 | portal protein | phrog_12 | portal protein | head and packaging | -1 | 101017 | 102258 |
AQT25349.1 | KY363465_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15832 | 16023 |
AQT25241.1 | KY363465_p104 | phosphate starvation-inducible protein | phrog_170 | PhoH-like phosphate starvation-inducible | other | -1 | 52173 | 52892 |
AQT25221.1 | KY363465_p145 | major tail protein | phrog_3575 | major tail protein | tail | -1 | 94799 | 95944 |
AQT25254.1 | KY363465_p66 | hypothetical protein | singleton | unknown function | unknown function | -1 | 31002 | 31553 |
AQT25342.1 | KY363465_p16 | hypothetical protein | phrog_1585 | unknown function | unknown function | 1 | 9105 | 9335 |
AQT25352.1 | KY363465_p71 | hypothetical protein | phrog_31329 | unknown function | unknown function | -1 | 33503 | 33688 |
AQT25340.1 | KY363465_p111 | hypothetical protein | phrog_5291 | unknown function | unknown function | 1 | 59749 | 59988 |
AQT25291.1 | KY363465_p93 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44103 | 44480 |
AQT25213.1 | KY363465_p4 | DNA transfer protein A1 | phrog_1745 | DNA transfer protein | other | -1 | 1802 | 3565 |
AQT25294.1 | KY363465_p38 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18754 | 19122 |
AQT25240.1 | KY363465_p94 | hypothetical protein | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 44492 | 45220 |
AQT25282.1 | KY363465_p137 | tail protein | phrog_1084 | unknown function | unknown function | -1 | 82180 | 82593 |
AQT25367.1 | KY363465_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8910 | 9041 |
AQT25360.1 | KY363465_p63 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30074 | 30238 |
AQT25267.1 | KY363465_p155 | terminase small subunit | phrog_3802 | terminase small subunit | head and packaging | -1 | 104263 | 104736 |
AQT25269.1 | KY363465_p5 | DNA transfer protein A2 | phrog_1725 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 3641 | 4105 |
ARB02554.1 | KY363465_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13792 | 13884 |
AQT25268.1 | KY363465_p3 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1201 | 1665 |
AQT25209.1 | KY363465_p105 | ribonucleotide reductase of class III (anaerobic) large subunit | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | 1 | 53186 | 55057 |
AQT25255.1 | KY363465_p43 | phosphatase | phrog_547 | phosphoesterase | other | -1 | 20880 | 21428 |
AQT25368.1 | KY363465_p67 | hypothetical protein | phrog_2140 | unknown function | unknown function | -1 | 31935 | 32066 |
AQT25356.2 | KY363465_p35 | hypothetical protein | phrog_4605 | unknown function | unknown function | -1 | 17560 | 18012 |
AQT25263.1 | KY363465_p55 | radical cofactor | singleton | unknown function | unknown function | -1 | 26696 | 27187 |
AQT25293.1 | KY363465_p129 | hypothetical protein | phrog_4258 | unknown function | unknown function | 1 | 73985 | 74359 |
AQT25312.1 | KY363465_p73 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34051 | 34374 |
AQT25323.1 | KY363465_p64 | hypothetical protein | phrog_10176 | unknown function | unknown function | -1 | 30404 | 30694 |
AQT25329.1 | KY363465_p14 | hypothetical protein | phrog_27799 | unknown function | unknown function | 1 | 8579 | 8848 |
AQT25363.1 | KY363465_p78 | hypothetical protein | singleton | unknown function | unknown function | -1 | 36254 | 36400 |
AQT25336.1 | KY363465_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17314 | 17559 |
AQT25210.1 | KY363465_p156 | hypothetical protein | phrog_4815 | receptor binding tail protein | tail | -1 | 104746 | 106611 |
AQT25215.1 | KY363465_p121 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 65558 | 67075 |
AQT25231.1 | KY363465_p125 | DNA polymerase | phrog_5995 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 70937 | 71761 |
AQT25229.1 | KY363465_p122 | DNA replication primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 67072 | 67950 |
AQT25280.1 | KY363465_p46 | endolysin | phrog_465 | endolysin | lysis | -1 | 22098 | 22523 |
AQT25350.1 | KY363465_p81 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37561 | 37752 |
AQT25370.1 | KY363465_p75 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34717 | 34839 |
AQT25308.1 | KY363465_p142 | hypothetical protein | phrog_3914 | tail assembly chaperone | tail | -1 | 93069 | 93398 |
AQT25327.1 | KY363465_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7548 | 7820 |
AQT25287.1 | KY363465_p88 | hypothetical protein | phrog_2650 | unknown function | unknown function | -1 | 41799 | 42197 |
AQT25249.1 | KY363465_p24 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13887 | 14516 |
AQT25212.1 | KY363465_p123 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 68023 | 69840 |
AQT25307.1 | KY363465_p115 | hypothetical protein | phrog_3696 | unknown function | unknown function | 1 | 61507 | 61836 |
AQT25250.1 | KY363465_p140 | distal tail protein | phrog_1302 | distal tail protein | tail | -1 | 88551 | 89159 |
AQT25290.1 | KY363465_p85 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40540 | 40920 |
AQT25262.1 | KY363465_p126 | hypothetical protein | phrog_4386 | unknown function | unknown function | 1 | 71764 | 72258 |
AQT25246.1 | KY363465_p49 | deoxynucleoside monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 24074 | 24778 |
AQT25339.2 | KY363465_p22 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13510 | 13782 |
AQT25358.1 | KY363465_p59 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28751 | 28924 |
AQT25296.1 | KY363465_p86 | hypothetical protein | phrog_7572 | unknown function | unknown function | -1 | 40996 | 41361 |
AQT25313.1 | KY363465_p69 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32415 | 32726 |
AQT25351.1 | KY363465_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 28933 | 29121 |
AQT25275.1 | KY363465_p92 | SleB | phrog_938 | endolysin | lysis | -1 | 43666 | 44103 |
AQT25298.1 | KY363465_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16005 | 16361 |
AQT25362.1 | KY363465_p80 | hypothetical protein | phrog_11405 | unknown function | unknown function | -1 | 37312 | 37461 |
AQT25359.1 | KY363465_p68 | hypothetical protein | singleton | unknown function | unknown function | -1 | 32150 | 32317 |
AQT25232.1 | KY363465_p130 | hypothetical protein | phrog_1607 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 74346 | 75164 |
AQT25297.1 | KY363465_p57 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27454 | 27813 |
AQT25256.1 | KY363465_p101 | dihydrofolate reductase | phrog_316 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 47957 | 48484 |
AQT25331.1 | KY363465_p89 | hypothetical protein | singleton | unknown function | unknown function | 1 | 42601 | 42864 |
AQT25318.1 | KY363465_p108 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55665 | 55961 |
AQT25317.1 | KY363465_p99 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46714 | 47010 |
AQT25306.1 | KY363465_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15177 | 15509 |
AQT25371.1 | KY363465_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7181 | 7297 |
AQT25320.1 | KY363465_p40 | hypothetical protein | phrog_3880 | unknown function | unknown function | -1 | 19306 | 19599 |
AQT25218.1 | KY363465_p154 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 102941 | 104263 |
AQT25373.1 | KY363465_p61 | hypothetical protein | singleton | unknown function | unknown function | -1 | 29259 | 29372 |
AQT25301.1 | KY363465_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 14818 | 15165 |
AQT25347.1 | KY363465_p107 | hypothetical protein | phrog_2210 | unknown function | unknown function | 1 | 55469 | 55681 |
AQT25295.1 | KY363465_p41 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19674 | 20042 |
AQT25253.1 | KY363465_p58 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27816 | 28367 |
AQT25208.1 | KY363465_p136 | tail fiber protein | phrog_22285 | tail fiber protein | tail | -1 | 79901 | 82180 |
AQT25276.1 | KY363465_p45 | hypothetical protein | phrog_4328 | unknown function | unknown function | -1 | 21586 | 22020 |
AQT25270.1 | KY363465_p135 | deoxyUTP pyrophosphatase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 79396 | 79860 |
AQT25316.1 | KY363465_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12885 | 13181 |
AQT25281.1 | KY363465_p31 | acetyltransferase | singleton | unknown function | unknown function | -1 | 16327 | 16749 |
AQT25302.1 | KY363465_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4772 | 5113 |
AQT25211.1 | KY363465_p132 | exonuclease subunit 2 | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 76187 | 78040 |
AQT25321.1 | KY363465_p116 | transcriptional regulator protein | phrog_4053 | transcriptional regulator | transcription regulation | 1 | 61877 | 62170 |
AQT25288.1 | KY363465_p114 | hypothetical protein | phrog_1725 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 61096 | 61494 |
AQT25354.1 | KY363465_p76 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34836 | 35018 |
AQT25265.1 | KY363465_p133 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 78040 | 78522 |
AQT25251.1 | KY363465_p150 | prohead protease | phrog_80 | head maturation protease | head and packaging | -1 | 99234 | 99812 |
AQT25314.1 | KY363465_p25 | hypothetical protein | singleton | unknown function | unknown function | -1 | 14513 | 14821 |
AQT25227.1 | KY363465_p144 | minor tail protein | phrog_3889 | base plate tail tube protein | tail | -1 | 93902 | 94795 |
AQT25273.1 | KY363465_p36 | hypothetical protein | phrog_4215 | unknown function | unknown function | -1 | 17969 | 18424 |
AQT25364.1 | KY363465_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7333 | 7476 |
AQT25247.1 | KY363465_p19 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11986 | 12687 |
AQT25361.1 | KY363465_p44 | hypothetical protein | singleton | unknown function | unknown function | -1 | 21431 | 21583 |
AQT25236.1 | KY363465_p147 | hypothetical protein | phrog_3725 | tail completion or Neck1 protein | connector | -1 | 96455 | 97216 |
AQT25300.1 | KY363465_p106 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55123 | 55476 |
AQT25325.1 | KY363465_p90 | hypothetical protein | singleton | unknown function | unknown function | -1 | 42938 | 43222 |
AQT25283.1 | KY363465_p143 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | -1 | 93484 | 93894 |
AQT25310.1 | KY363465_p37 | hypothetical protein | phrog_4731 | unknown function | unknown function | -1 | 18424 | 18750 |
AQT25274.1 | KY363465_p117 | hypothetical protein | singleton | unknown function | unknown function | 1 | 62269 | 62718 |
AQT25242.1 | KY363465_p112 | hypothetical protein | phrog_3611 | helicase | DNA, RNA and nucleotide metabolism | 1 | 60046 | 60765 |
AQT25289.1 | KY363465_p70 | hypothetical protein | phrog_11273 | unknown function | unknown function | -1 | 33114 | 33503 |
AQT25303.1 | KY363465_p51 | outer membrane lipoprotein i-spanin | singleton | unknown function | unknown function | -1 | 25043 | 25384 |
AQT25285.1 | KY363465_p52 | hypothetical protein | phrog_27961 | unknown function | unknown function | -1 | 25479 | 25880 |
AQT25252.1 | KY363465_p83 | hypothetical protein | phrog_1383 | virion structural protein | head and packaging | -1 | 38805 | 39374 |
AQT25207.1 | KY363465_p103 | ribonucleotide-diphosphate reductase class Ia (aerobic) alpha subunit | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | -1 | 49661 | 52045 |
AQT25311.1 | KY363465_p50 | outer membrane lipoprotein o-spanin | phrog_812 | Rz-like spanin | lysis | -1 | 24768 | 25091 |
AQT25335.1 | KY363465_p87 | hypothetical protein | singleton | unknown function | unknown function | -1 | 41472 | 41720 |
AQT25235.1 | KY363465_p124 | hypothetical protein | phrog_4645 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 70092 | 70877 |
AQT25346.1 | KY363465_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 30691 | 30909 |
AQT25326.1 | KY363465_p97 | hypothetical protein | phrog_4593 | unknown function | unknown function | -1 | 45871 | 46149 |
AQT25228.1 | KY363465_p134 | flap endonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 78522 | 79403 |
AQT25284.1 | KY363465_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6596 | 6997 |
AQT25220.1 | KY363465_p151 | hypothetical protein | singleton | unknown function | unknown function | -1 | 99809 | 101020 |
AQT25260.1 | KY363465_p153 | hypothetical protein | phrog_3497 | unknown function | unknown function | -1 | 102258 | 102761 |
AQT25365.1 | KY363465_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10551 | 10694 |
AQT25205.1 | KY363465_p139 | tail protein | phrog_31 | central tail fiber J | tail | -1 | 85707 | 88550 |
AQT25216.1 | KY363465_p149 | major capsid protein | phrog_10 | major head protein | head and packaging | -1 | 97800 | 99227 |
AQT25353.1 | KY363465_p39 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19122 | 19304 |
AQT25233.1 | KY363465_p42 | serine/threonine protein phosphatase | phrog_246 | NinI-like serine-threonine phosphatase | other | -1 | 20045 | 20848 |
AQT25206.1 | KY363465_p110 | replication origin binding protein | phrog_3712 | replication origin binding | DNA, RNA and nucleotide metabolism | 1 | 56976 | 59756 |
AQT25322.1 | KY363465_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4376 | 4666 |
AQT25355.1 | KY363465_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17027 | 17206 |
AQT25305.1 | KY363465_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 26175 | 26513 |
AQT25203.1 | KY363465_p141 | tape measure protein | phrog_3779 | tail length tape measure protein | tail | -1 | 89276 | 92989 |
AQT25245.1 | KY363465_p48 | Clp protease | phrog_1827 | ATP-dependent protease | other | -1 | 23358 | 24062 |
AQT25230.1 | KY363465_p100 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 47115 | 47960 |
AQT25258.1 | KY363465_p148 | hypothetical protein | phrog_442 | head-tail adaptor | connector | -1 | 97216 | 97734 |
AQT25217.1 | KY363465_p127 | helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 72255 | 73631 |
AQT25277.1 | KY363465_p91 | hypothetical protein | phrog_1460 | tRNA amidotransferase | DNA, RNA and nucleotide metabolism | -1 | 43230 | 43664 |
AQT25259.1 | KY363465_p157 | hypothetical protein | singleton | unknown function | unknown function | 1 | 106776 | 107294 |
AQT25338.1 | KY363465_p1 | hypothetical protein | singleton | unknown function | unknown function | -1 | 63 | 302 |
AQT25337.1 | KY363465_p53 | hypothetical protein | singleton | unknown function | unknown function | -1 | 25870 | 26115 |
AQT25261.1 | KY363465_p98 | ribonuclease HI | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | -1 | 46217 | 46714 |
AQT25264.1 | KY363465_p146 | hypothetical protein | phrog_3907 | tail terminator | connector | -1 | 95970 | 96455 |
ARB02555.1 | KY363465_p95 | hypothetical protein | phrog_5724 | unknown function | unknown function | -1 | 45162 | 45455 |
AQT25278.1 | KY363465_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7907 | 8335 |
AQT25357.1 | KY363465_p77 | hypothetical protein | phrog_6060 | anti-termination protein Q-like | transcription regulation | -1 | 35906 | 36082 |
AQT25223.1 | KY363465_p84 | hypothetical protein | phrog_2087 | unknown function | unknown function | -1 | 39374 | 40420 |
AQT25204.1 | KY363465_p138 | tail protein | phrog_3890 | straight fibre tail protein | tail | -1 | 82598 | 85714 |
AQT25224.1 | KY363465_p118 | DNA ligase | phrog_3359 | NAD-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 62709 | 63710 |
AQT25222.1 | KY363465_p102 | ribonucleotide-diphosphate reductase class Ia (aerobic) beta subunit | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | -1 | 48484 | 49587 |
AQT25266.1 | KY363465_p82 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37797 | 38270 |
AQT25333.1 | KY363465_p113 | hypothetical protein | singleton | unknown function | unknown function | 1 | 60765 | 61019 |
AQT25332.1 | KY363465_p56 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27198 | 27452 |
AQT25344.1 | KY363465_p79 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37009 | 37230 |
AQT25299.1 | KY363465_p74 | hypothetical protein | phrog_1479 | unknown function | unknown function | -1 | 34374 | 34730 |
AQT25315.1 | KY363465_p109 | hypothetical protein | singleton | unknown function | unknown function | 1 | 55961 | 56260 |
AQT25243.1 | KY363465_p2 | deoxynucleoside-5'-monophosphatase | phrog_415 | polynucleotide kinase | other | -1 | 399 | 1115 |
AQT25239.1 | KY363465_p119 | DNA ligase subunit B | phrog_3498 | NAD-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 63903 | 64649 |