Genomic map of Salmonella phage LPSE1 (KY379853)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY379853
Definition
Salmonella phage LPSE1, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; unclassified Jerseyvirus.
DB of origin
NUCCORE
Length
41854
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
59
%GC
49.82
Number of singletons
2
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
APU03009.1 KY379853_p40 hypothetical protein phrog_169 tail completion or Neck1 protein connector 1 25455 25850
APU02981.1 KY379853_p12 hypothetical protein phrog_3766 unknown function unknown function 1 10066 10284
APU02982.1 KY379853_p13 hypothetical protein phrog_4947 unknown function unknown function 1 10287 10652
APU02984.1 KY379853_p15 hypothetical protein phrog_2359 holin lysis 1 11171 11452
APU02977.1 KY379853_p8 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 8083 8253
APU02974.1 KY379853_p5 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 5377 5595
APU02995.1 KY379853_p26 structural protein phrog_145 portal protein head and packaging 1 15736 17211
APU02997.1 KY379853_p28 hypothetical protein phrog_241 head morphogenesis head and packaging 1 18074 19933
APU02987.1 KY379853_p18 hypothetical protein phrog_3002 unknown function unknown function 1 12578 12736
APU02970.1 KY379853_p1 hypothetical protein phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism -1 450 1193
APU02990.1 KY379853_p21 hypothetical protein phrog_2531 unknown function unknown function 1 13259 13537
APU03008.1 KY379853_p39 tail protein phrog_161 head closure Hc1 connector 1 25099 25458
APU03018.1 KY379853_p49 tape measure protein phrog_1538 tail length tape measure protein tail 1 30793 33126
APU03005.1 KY379853_p36 hypothetical protein phrog_4451 unknown function unknown function 1 23790 23978
APU03026.1 KY379853_p57 hypothetical protein phrog_4879 unknown function unknown function -1 40785 40976
APU03001.1 KY379853_p32 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 21292 21993
APU03014.1 KY379853_p45 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 28477 29607
APU03017.1 KY379853_p48 hypothetical protein phrog_4557 unknown function unknown function 1 30441 30800
APU02989.1 KY379853_p20 NinH-like protein phrog_268 unknown function unknown function 1 12885 13241
APU02975.1 KY379853_p6 hypothetical protein phrog_3228 replicative helicase-primase DNA, RNA and nucleotide metabolism -1 5610 7796
APU03023.1 KY379853_p54 tailspike protein phrog_1819 tail spike protein tail 1 37064 39094
APU03015.1 KY379853_p46 immunity to superinfection membrane protein phrog_1039 immunity to superinfection moron, auxiliary metabolic gene and host takeover -1 29670 29849
APU02973.1 KY379853_p4 hypothetical protein phrog_3127 unknown function unknown function -1 4708 5100
APU03027.1 KY379853_p58 restriction endonuclease phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 41008 41295
APU03028.1 KY379853_p59 DNA polymerase phrog_7766 DNA polymerase DNA, RNA and nucleotide metabolism -1 41382 41735
APU03004.1 KY379853_p35 hypothetical protein phrog_4069 Hoc-like head decoration head and packaging 1 23403 23753
APU02993.1 KY379853_p24 hypothetical protein phrog_3064 terminase head and packaging 1 13956 14462
APU02994.1 KY379853_p25 hypothetical protein phrog_2 terminase large subunit head and packaging 1 14452 15723
APU03006.1 KY379853_p37 hypothetical protein phrog_477 head-tail adaptor Ad1 connector 1 23982 24491
APU02979.1 KY379853_p10 hypothetical protein phrog_9384 unknown function unknown function 1 9394 9558
APU03021.1 KY379853_p52 hypothetical protein phrog_329 minor tail protein tail 1 34137 34502
APU02996.1 KY379853_p27 amidase phrog_6095 amidase lysis -1 17242 17895
APU03002.1 KY379853_p33 hypothetical protein phrog_247 major head protein head and packaging 1 21997 23046
APU02976.1 KY379853_p7 uvsX-like protein singleton unknown function unknown function -1 7853 7957
APU02985.1 KY379853_p16 lysozyme phrog_7 endolysin lysis 1 11722 12210
APU02971.1 KY379853_p2 hypothetical protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 2684 3310
APU03025.1 KY379853_p56 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism -1 39364 40704
APU02988.1 KY379853_p19 hypothetical protein phrog_4684 unknown function unknown function 1 12733 12888
APU03011.1 KY379853_p42 tail protein phrog_290 minor tail protein tail 1 26269 27438
APU03020.1 KY379853_p51 hypothetical protein phrog_396 minor tail protein tail 1 33625 34140
APU03010.1 KY379853_p41 hypothetical protein phrog_179 tail terminator connector 1 25850 26269
APU02983.1 KY379853_p14 hypothetical protein phrog_1040 peptidase HslV family other 1 10658 11092
APU02972.1 KY379853_p3 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 3392 4666
APU03007.1 KY379853_p38 hypothetical protein phrog_3614 unknown function unknown function 1 24494 25099
APU02978.1 KY379853_p9 hypothetical protein phrog_924 unknown function unknown function 1 9064 9273
APU02991.1 KY379853_p22 hypothetical protein phrog_10956 unknown function unknown function 1 13553 13735
APU03013.1 KY379853_p44 hypothetical protein phrog_27969 unknown function unknown function 1 27855 28502
APU03003.1 KY379853_p34 head protein phrog_4366 head fiber protein head and packaging 1 23107 23391
APU03016.1 KY379853_p47 hypothetical protein phrog_313 Tail assembly chaperone tail 1 30019 30435
APU03024.1 KY379853_p55 hypothetical protein phrog_5915 unknown function unknown function -1 39206 39367
APU02986.1 KY379853_p17 hypothetical protein phrog_2180 unknown function unknown function 1 12396 12581
APU02999.1 KY379853_p30 hypothetical protein phrog_2536 Rz-like spanin lysis 1 20712 21098
APU02998.1 KY379853_p29 head decoration protein phrog_3945 Hoc-like head decoration head and packaging 1 19936 20394
APU03019.1 KY379853_p50 hypothetical protein phrog_384 virion structural protein head and packaging 1 33185 33628
APU03000.1 KY379853_p31 hypothetical protein phrog_5672 Rz-like spanin lysis 1 21082 21207
APU03022.1 KY379853_p53 hypothetical protein phrog_469 tail protein tail 1 34493 37051
APU03012.1 KY379853_p43 DNA-binding protein singleton unknown function unknown function -1 27467 27811
APU02992.1 KY379853_p23 hypothetical protein phrog_18319 unknown function unknown function 1 13796 13927
APU02980.1 KY379853_p11 hypothetical protein phrog_6094 unknown function unknown function 1 9734 10084