| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY379853 |
Definition |
Salmonella phage LPSE1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; unclassified Jerseyvirus. |
DB of origin |
NUCCORE |
Length |
41854 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
59 |
%GC |
49.82 |
Number of singletons |
2 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| APU03009.1 | KY379853_p40 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 25455 | 25850 |
| APU02981.1 | KY379853_p12 | hypothetical protein | phrog_3766 | unknown function | unknown function | 1 | 10066 | 10284 |
| APU02982.1 | KY379853_p13 | hypothetical protein | phrog_4947 | unknown function | unknown function | 1 | 10287 | 10652 |
| APU02984.1 | KY379853_p15 | hypothetical protein | phrog_2359 | holin | lysis | 1 | 11171 | 11452 |
| APU02977.1 | KY379853_p8 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 8083 | 8253 |
| APU02974.1 | KY379853_p5 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | 1 | 5377 | 5595 |
| APU02995.1 | KY379853_p26 | structural protein | phrog_145 | portal protein | head and packaging | 1 | 15736 | 17211 |
| APU02997.1 | KY379853_p28 | hypothetical protein | phrog_241 | head morphogenesis | head and packaging | 1 | 18074 | 19933 |
| APU02987.1 | KY379853_p18 | hypothetical protein | phrog_3002 | unknown function | unknown function | 1 | 12578 | 12736 |
| APU02970.1 | KY379853_p1 | hypothetical protein | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 450 | 1193 |
| APU02990.1 | KY379853_p21 | hypothetical protein | phrog_2531 | unknown function | unknown function | 1 | 13259 | 13537 |
| APU03008.1 | KY379853_p39 | tail protein | phrog_161 | head closure Hc1 | connector | 1 | 25099 | 25458 |
| APU03018.1 | KY379853_p49 | tape measure protein | phrog_1538 | tail length tape measure protein | tail | 1 | 30793 | 33126 |
| APU03005.1 | KY379853_p36 | hypothetical protein | phrog_4451 | unknown function | unknown function | 1 | 23790 | 23978 |
| APU03026.1 | KY379853_p57 | hypothetical protein | phrog_4879 | unknown function | unknown function | -1 | 40785 | 40976 |
| APU03001.1 | KY379853_p32 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 21292 | 21993 |
| APU03014.1 | KY379853_p45 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 28477 | 29607 |
| APU03017.1 | KY379853_p48 | hypothetical protein | phrog_4557 | unknown function | unknown function | 1 | 30441 | 30800 |
| APU02989.1 | KY379853_p20 | NinH-like protein | phrog_268 | unknown function | unknown function | 1 | 12885 | 13241 |
| APU02975.1 | KY379853_p6 | hypothetical protein | phrog_3228 | replicative helicase-primase | DNA, RNA and nucleotide metabolism | -1 | 5610 | 7796 |
| APU03023.1 | KY379853_p54 | tailspike protein | phrog_1819 | tail spike protein | tail | 1 | 37064 | 39094 |
| APU03015.1 | KY379853_p46 | immunity to superinfection membrane protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | -1 | 29670 | 29849 |
| APU02973.1 | KY379853_p4 | hypothetical protein | phrog_3127 | unknown function | unknown function | -1 | 4708 | 5100 |
| APU03027.1 | KY379853_p58 | restriction endonuclease | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 41008 | 41295 |
| APU03028.1 | KY379853_p59 | DNA polymerase | phrog_7766 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 41382 | 41735 |
| APU03004.1 | KY379853_p35 | hypothetical protein | phrog_4069 | Hoc-like head decoration | head and packaging | 1 | 23403 | 23753 |
| APU02993.1 | KY379853_p24 | hypothetical protein | phrog_3064 | terminase | head and packaging | 1 | 13956 | 14462 |
| APU02994.1 | KY379853_p25 | hypothetical protein | phrog_2 | terminase large subunit | head and packaging | 1 | 14452 | 15723 |
| APU03006.1 | KY379853_p37 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 23982 | 24491 |
| APU02979.1 | KY379853_p10 | hypothetical protein | phrog_9384 | unknown function | unknown function | 1 | 9394 | 9558 |
| APU03021.1 | KY379853_p52 | hypothetical protein | phrog_329 | minor tail protein | tail | 1 | 34137 | 34502 |
| APU02996.1 | KY379853_p27 | amidase | phrog_6095 | amidase | lysis | -1 | 17242 | 17895 |
| APU03002.1 | KY379853_p33 | hypothetical protein | phrog_247 | major head protein | head and packaging | 1 | 21997 | 23046 |
| APU02976.1 | KY379853_p7 | uvsX-like protein | singleton | unknown function | unknown function | -1 | 7853 | 7957 |
| APU02985.1 | KY379853_p16 | lysozyme | phrog_7 | endolysin | lysis | 1 | 11722 | 12210 |
| APU02971.1 | KY379853_p2 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 2684 | 3310 |
| APU03025.1 | KY379853_p56 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 39364 | 40704 |
| APU02988.1 | KY379853_p19 | hypothetical protein | phrog_4684 | unknown function | unknown function | 1 | 12733 | 12888 |
| APU03011.1 | KY379853_p42 | tail protein | phrog_290 | minor tail protein | tail | 1 | 26269 | 27438 |
| APU03020.1 | KY379853_p51 | hypothetical protein | phrog_396 | minor tail protein | tail | 1 | 33625 | 34140 |
| APU03010.1 | KY379853_p41 | hypothetical protein | phrog_179 | tail terminator | connector | 1 | 25850 | 26269 |
| APU02983.1 | KY379853_p14 | hypothetical protein | phrog_1040 | peptidase HslV family | other | 1 | 10658 | 11092 |
| APU02972.1 | KY379853_p3 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 3392 | 4666 |
| APU03007.1 | KY379853_p38 | hypothetical protein | phrog_3614 | unknown function | unknown function | 1 | 24494 | 25099 |
| APU02978.1 | KY379853_p9 | hypothetical protein | phrog_924 | unknown function | unknown function | 1 | 9064 | 9273 |
| APU02991.1 | KY379853_p22 | hypothetical protein | phrog_10956 | unknown function | unknown function | 1 | 13553 | 13735 |
| APU03013.1 | KY379853_p44 | hypothetical protein | phrog_27969 | unknown function | unknown function | 1 | 27855 | 28502 |
| APU03003.1 | KY379853_p34 | head protein | phrog_4366 | head fiber protein | head and packaging | 1 | 23107 | 23391 |
| APU03016.1 | KY379853_p47 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | 1 | 30019 | 30435 |
| APU03024.1 | KY379853_p55 | hypothetical protein | phrog_5915 | unknown function | unknown function | -1 | 39206 | 39367 |
| APU02986.1 | KY379853_p17 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 12396 | 12581 |
| APU02999.1 | KY379853_p30 | hypothetical protein | phrog_2536 | Rz-like spanin | lysis | 1 | 20712 | 21098 |
| APU02998.1 | KY379853_p29 | head decoration protein | phrog_3945 | Hoc-like head decoration | head and packaging | 1 | 19936 | 20394 |
| APU03019.1 | KY379853_p50 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | 1 | 33185 | 33628 |
| APU03000.1 | KY379853_p31 | hypothetical protein | phrog_5672 | Rz-like spanin | lysis | 1 | 21082 | 21207 |
| APU03022.1 | KY379853_p53 | hypothetical protein | phrog_469 | tail protein | tail | 1 | 34493 | 37051 |
| APU03012.1 | KY379853_p43 | DNA-binding protein | singleton | unknown function | unknown function | -1 | 27467 | 27811 |
| APU02992.1 | KY379853_p23 | hypothetical protein | phrog_18319 | unknown function | unknown function | 1 | 13796 | 13927 |
| APU02980.1 | KY379853_p11 | hypothetical protein | phrog_6094 | unknown function | unknown function | 1 | 9734 | 10084 |