Genomic map of Staphylococcus phage phi879 (KY389064)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY389064
Definition
Staphylococcus phage phi879, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus; unclassified Biseptimavirus.
DB of origin
NUCCORE
Length
41448
Host Name
Staphylococcus sciuri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
55
%GC
32.01
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AQN32284.1 KY389064_p53 cell division protein phrog_35548 unknown function unknown function -1 39727 40227
AQN32273.1 KY389064_p42 tail spike with endopeptidase domain phrog_1786 minor head protein head and packaging 1 30704 34507
AQN32278.1 KY389064_p47 holin phrog_297 holin lysis 1 35897 36157
AQN32279.1 KY389064_p48 N-acetylmuramoyl-L-alanine amidase phrog_833 endolysin lysis 1 36233 37102
AQN32246.1 KY389064_p15 recombinational DNA repair protein phrog_148 RecT-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 8816 9724
AQN32265.1 KY389064_p34 head-tail connector protein phrog_40 head-tail adaptor Ad1 connector 1 21243 21575
AQN32262.1 KY389064_p31 head maturation protease phrog_80 head maturation protease head and packaging 1 19116 19658
AQN32257.1 KY389064_p26 5-methylcytosine-specific restriction endonuclease McrA-like protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 14825 15223
AQN32256.1 KY389064_p25 RNA polymerase sigma 70 factor phrog_36 transcriptional regulator transcription regulation 1 14333 14734
AQN32264.1 KY389064_p33 hypothetical protein phrog_933 unknown function unknown function 1 21037 21231
AQN32252.1 KY389064_p21 hypothetical protein phrog_29608 unknown function unknown function 1 12977 13375
AQN32282.1 KY389064_p51 DUF4868 domain-containing protein phrog_11123 unknown function unknown function 1 38098 39099
AQN32260.1 KY389064_p29 hypothetical protein phrog_1142 unknown function unknown function 1 17598 17798
AQN32280.1 KY389064_p49 hypothetical protein singleton unknown function unknown function 1 37282 37458
AQN32233.1 KY389064_p2 hypothetical protein singleton unknown function unknown function 1 1343 1531
AQN32235.1 KY389064_p4 cI repressor with LexA-like and peptidase domain phrog_4 transcriptional repressor transcription regulation -1 2535 3155
AQN32276.1 KY389064_p45 hypothetical protein phrog_2968 tail protein tail 1 35037 35498
AQN32274.1 KY389064_p43 hypothetical protein phrog_1399 unknown function unknown function 1 34507 34668
AQN32269.1 KY389064_p38 major tail protein phrog_88 major tail protein tail 1 22664 23380
AQN32236.1 KY389064_p5 HTH-type transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 3300 3539
AQN32240.1 KY389064_p9 DUF771 domain-containing protein phrog_823 unknown function unknown function 1 5038 5265
AQN32253.1 KY389064_p22 YopX-like protein phrog_9246 unknown function unknown function 1 13436 13651
AQN32283.1 KY389064_p52 hypothetical protein phrog_7312 unknown function unknown function 1 39111 39668
AQN32245.1 KY389064_p14 DUF2321 domain-containing protein phrog_16447 unknown function unknown function -1 8282 8752
AQN32267.1 KY389064_p36 tail-component phrog_5 tail completion or Neck1 protein connector 1 21897 22274
AQN32268.1 KY389064_p37 tail component phrog_78 tail terminator connector 1 22271 22651
AQN32238.1 KY389064_p7 hypothetical protein phrog_2312 unknown function unknown function 1 4369 4533
AQN32266.1 KY389064_p35 head-tail adaptor-like protein phrog_25 head closure Hc1 connector 1 21565 21897
AQN32275.1 KY389064_p44 hypothetical protein phrog_1747 unknown function unknown function 1 34709 34996
AQN32249.1 KY389064_p18 replication initiation protein phrog_186 DnaD-like helicase loader DNA, RNA and nucleotide metabolism 1 10938 11867
AQN32250.1 KY389064_p19 hypothetical protein phrog_28272 unknown function unknown function 1 11851 12558
AQN32241.1 KY389064_p10 hypothetical protein phrog_36030 unknown function unknown function 1 5262 5441
AQN32272.1 KY389064_p41 tail component protein phrog_202 distal tail protein Dit tail 1 29168 30688
AQN32244.1 KY389064_p13 hypothetical protein phrog_31644 unknown function unknown function 1 7784 8119
AQN32254.1 KY389064_p23 hypothetical protein phrog_28466 unknown function unknown function 1 13645 13854
AQN32261.1 KY389064_p30 portal protein phrog_12 portal protein head and packaging 1 17804 19069
AQN32232.1 KY389064_p1 integrase phrog_1 integrase integration and excision -1 143 1171
AQN32286.1 KY389064_p55 YolD-like protein phrog_3352 unknown function unknown function -1 40893 41303
AQN32259.1 KY389064_p28 terminase large subunit phrog_9 terminase large subunit head and packaging 1 15859 17586
AQN32263.1 KY389064_p32 major capsid protein phrog_10 major head protein head and packaging 1 19768 20994
AQN32277.1 KY389064_p46 hypothetical protein phrog_2990 unknown function unknown function 1 35498 35884
AQN32237.1 KY389064_p6 antirepressor protein phrog_130 anti-repressor Ant transcription regulation 1 3573 4355
AQN32281.1 KY389064_p50 hypothetical protein singleton unknown function unknown function -1 37717 37917
AQN32255.1 KY389064_p24 NTP pyrophosphohydrolase MazG family phrog_229 MazG-like pyrophosphatase other 1 13841 14299
AQN32271.1 KY389064_p40 tail tape-measure protein phrog_167 tail length tape measure protein tail 1 24156 29153
AQN32239.1 KY389064_p8 BRO family antirepressor protein phrog_2977 anti-repressor transcription regulation 1 4545 4937
AQN32234.1 KY389064_p3 hypothetical protein phrog_16607 unknown function unknown function -1 1505 2476
AQN32285.1 KY389064_p54 hypothetical protein singleton unknown function unknown function -1 40382 40882
AQN32243.1 KY389064_p12 ATPase phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 5835 7787
AQN32258.1 KY389064_p27 terminase small subunit phrog_83 terminase small subunit head and packaging 1 15393 15875
AQN32251.1 KY389064_p20 holliday junction resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 12555 12977
AQN32248.1 KY389064_p17 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 10423 10905
AQN32270.1 KY389064_p39 hypothetical protein phrog_187 head-tail adaptor connector 1 23456 23905
AQN32247.1 KY389064_p16 phosphoribosyl phosphodiesterase -like protein phrog_392 metal-dependent hydrolase other 1 9820 10422
AQN32242.1 KY389064_p11 DUF1108 domain-containing protein phrog_401 unknown function unknown function 1 5442 5747