| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY389064 |
Definition |
Staphylococcus phage phi879, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus; unclassified Biseptimavirus. |
DB of origin |
NUCCORE |
Length |
41448 |
Host Name |
Staphylococcus sciuri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
55 |
%GC |
32.01 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AQN32284.1 | KY389064_p53 | cell division protein | phrog_35548 | unknown function | unknown function | -1 | 39727 | 40227 |
| AQN32273.1 | KY389064_p42 | tail spike with endopeptidase domain | phrog_1786 | minor head protein | head and packaging | 1 | 30704 | 34507 |
| AQN32278.1 | KY389064_p47 | holin | phrog_297 | holin | lysis | 1 | 35897 | 36157 |
| AQN32279.1 | KY389064_p48 | N-acetylmuramoyl-L-alanine amidase | phrog_833 | endolysin | lysis | 1 | 36233 | 37102 |
| AQN32246.1 | KY389064_p15 | recombinational DNA repair protein | phrog_148 | RecT-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 8816 | 9724 |
| AQN32265.1 | KY389064_p34 | head-tail connector protein | phrog_40 | head-tail adaptor Ad1 | connector | 1 | 21243 | 21575 |
| AQN32262.1 | KY389064_p31 | head maturation protease | phrog_80 | head maturation protease | head and packaging | 1 | 19116 | 19658 |
| AQN32257.1 | KY389064_p26 | 5-methylcytosine-specific restriction endonuclease McrA-like protein | phrog_144 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 14825 | 15223 |
| AQN32256.1 | KY389064_p25 | RNA polymerase sigma 70 factor | phrog_36 | transcriptional regulator | transcription regulation | 1 | 14333 | 14734 |
| AQN32264.1 | KY389064_p33 | hypothetical protein | phrog_933 | unknown function | unknown function | 1 | 21037 | 21231 |
| AQN32252.1 | KY389064_p21 | hypothetical protein | phrog_29608 | unknown function | unknown function | 1 | 12977 | 13375 |
| AQN32282.1 | KY389064_p51 | DUF4868 domain-containing protein | phrog_11123 | unknown function | unknown function | 1 | 38098 | 39099 |
| AQN32260.1 | KY389064_p29 | hypothetical protein | phrog_1142 | unknown function | unknown function | 1 | 17598 | 17798 |
| AQN32280.1 | KY389064_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37282 | 37458 |
| AQN32233.1 | KY389064_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1343 | 1531 |
| AQN32235.1 | KY389064_p4 | cI repressor with LexA-like and peptidase domain | phrog_4 | transcriptional repressor | transcription regulation | -1 | 2535 | 3155 |
| AQN32276.1 | KY389064_p45 | hypothetical protein | phrog_2968 | tail protein | tail | 1 | 35037 | 35498 |
| AQN32274.1 | KY389064_p43 | hypothetical protein | phrog_1399 | unknown function | unknown function | 1 | 34507 | 34668 |
| AQN32269.1 | KY389064_p38 | major tail protein | phrog_88 | major tail protein | tail | 1 | 22664 | 23380 |
| AQN32236.1 | KY389064_p5 | HTH-type transcriptional regulator | phrog_3 | transcriptional repressor | transcription regulation | 1 | 3300 | 3539 |
| AQN32240.1 | KY389064_p9 | DUF771 domain-containing protein | phrog_823 | unknown function | unknown function | 1 | 5038 | 5265 |
| AQN32253.1 | KY389064_p22 | YopX-like protein | phrog_9246 | unknown function | unknown function | 1 | 13436 | 13651 |
| AQN32283.1 | KY389064_p52 | hypothetical protein | phrog_7312 | unknown function | unknown function | 1 | 39111 | 39668 |
| AQN32245.1 | KY389064_p14 | DUF2321 domain-containing protein | phrog_16447 | unknown function | unknown function | -1 | 8282 | 8752 |
| AQN32267.1 | KY389064_p36 | tail-component | phrog_5 | tail completion or Neck1 protein | connector | 1 | 21897 | 22274 |
| AQN32268.1 | KY389064_p37 | tail component | phrog_78 | tail terminator | connector | 1 | 22271 | 22651 |
| AQN32238.1 | KY389064_p7 | hypothetical protein | phrog_2312 | unknown function | unknown function | 1 | 4369 | 4533 |
| AQN32266.1 | KY389064_p35 | head-tail adaptor-like protein | phrog_25 | head closure Hc1 | connector | 1 | 21565 | 21897 |
| AQN32275.1 | KY389064_p44 | hypothetical protein | phrog_1747 | unknown function | unknown function | 1 | 34709 | 34996 |
| AQN32249.1 | KY389064_p18 | replication initiation protein | phrog_186 | DnaD-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 10938 | 11867 |
| AQN32250.1 | KY389064_p19 | hypothetical protein | phrog_28272 | unknown function | unknown function | 1 | 11851 | 12558 |
| AQN32241.1 | KY389064_p10 | hypothetical protein | phrog_36030 | unknown function | unknown function | 1 | 5262 | 5441 |
| AQN32272.1 | KY389064_p41 | tail component protein | phrog_202 | distal tail protein Dit | tail | 1 | 29168 | 30688 |
| AQN32244.1 | KY389064_p13 | hypothetical protein | phrog_31644 | unknown function | unknown function | 1 | 7784 | 8119 |
| AQN32254.1 | KY389064_p23 | hypothetical protein | phrog_28466 | unknown function | unknown function | 1 | 13645 | 13854 |
| AQN32261.1 | KY389064_p30 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 17804 | 19069 |
| AQN32232.1 | KY389064_p1 | integrase | phrog_1 | integrase | integration and excision | -1 | 143 | 1171 |
| AQN32286.1 | KY389064_p55 | YolD-like protein | phrog_3352 | unknown function | unknown function | -1 | 40893 | 41303 |
| AQN32259.1 | KY389064_p28 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 15859 | 17586 |
| AQN32263.1 | KY389064_p32 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 19768 | 20994 |
| AQN32277.1 | KY389064_p46 | hypothetical protein | phrog_2990 | unknown function | unknown function | 1 | 35498 | 35884 |
| AQN32237.1 | KY389064_p6 | antirepressor protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 3573 | 4355 |
| AQN32281.1 | KY389064_p50 | hypothetical protein | singleton | unknown function | unknown function | -1 | 37717 | 37917 |
| AQN32255.1 | KY389064_p24 | NTP pyrophosphohydrolase MazG family | phrog_229 | MazG-like pyrophosphatase | other | 1 | 13841 | 14299 |
| AQN32271.1 | KY389064_p40 | tail tape-measure protein | phrog_167 | tail length tape measure protein | tail | 1 | 24156 | 29153 |
| AQN32239.1 | KY389064_p8 | BRO family antirepressor protein | phrog_2977 | anti-repressor | transcription regulation | 1 | 4545 | 4937 |
| AQN32234.1 | KY389064_p3 | hypothetical protein | phrog_16607 | unknown function | unknown function | -1 | 1505 | 2476 |
| AQN32285.1 | KY389064_p54 | hypothetical protein | singleton | unknown function | unknown function | -1 | 40382 | 40882 |
| AQN32243.1 | KY389064_p12 | ATPase | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 5835 | 7787 |
| AQN32258.1 | KY389064_p27 | terminase small subunit | phrog_83 | terminase small subunit | head and packaging | 1 | 15393 | 15875 |
| AQN32251.1 | KY389064_p20 | holliday junction resolvase | phrog_140 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 12555 | 12977 |
| AQN32248.1 | KY389064_p17 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 10423 | 10905 |
| AQN32270.1 | KY389064_p39 | hypothetical protein | phrog_187 | head-tail adaptor | connector | 1 | 23456 | 23905 |
| AQN32247.1 | KY389064_p16 | phosphoribosyl phosphodiesterase -like protein | phrog_392 | metal-dependent hydrolase | other | 1 | 9820 | 10422 |
| AQN32242.1 | KY389064_p11 | DUF1108 domain-containing protein | phrog_401 | unknown function | unknown function | 1 | 5442 | 5747 |