| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY442063 |
Definition |
Staphylococcus phage Andhra, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Rakietenvirinae; Andhravirus; Staphylococcus virus Andhra. |
DB of origin |
NUCCORE |
Length |
18546 |
Host Name |
Staphylococcus epidermidis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
20 |
%GC |
29.82 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AQT27836.1 | KY442063_p14 | endolysin | phrog_833 | endolysin | lysis | -1 | 11861 | 12760 |
| AQT27831.1 | KY442063_p9 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 5006 | 7297 |
| AQT27832.1 | KY442063_p10 | peptidase | phrog_5979 | unknown function | unknown function | -1 | 7409 | 8830 |
| AQT27841.1 | KY442063_p19 | hypothetical protein | phrog_6289 | unknown function | unknown function | -1 | 17725 | 17916 |
| AQT27828.1 | KY442063_p6 | hypothetical protein | phrog_33778 | virion structural protein | head and packaging | 1 | 1905 | 3116 |
| AQT27825.1 | KY442063_p3 | single-stranded DNA binding protein | phrog_378 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 877 | 1386 |
| AQT27824.1 | KY442063_p2 | hypothetical protein | phrog_6346 | unknown function | unknown function | 1 | 647 | 862 |
| AQT27833.1 | KY442063_p11 | holin | phrog_199 | holin | lysis | -1 | 8823 | 9233 |
| AQT27837.1 | KY442063_p15 | hypothetical protein | phrog_37178 | unknown function | unknown function | -1 | 12796 | 14625 |
| AQT27829.1 | KY442063_p7 | hypothetical protein | phrog_6099 | unknown function | unknown function | 1 | 3127 | 3630 |
| AQT27838.1 | KY442063_p16 | lower collar protein | phrog_3225 | adaptor Ad4 | connector | -1 | 14638 | 15357 |
| AQT27830.1 | KY442063_p8 | encapsidation protein | phrog_2150 | terminase | head and packaging | 1 | 3689 | 4948 |
| AQT27834.1 | KY442063_p12 | major tail protein | phrog_2248 | tail protein | tail | -1 | 9242 | 11008 |
| AQT27823.1 | KY442063_p1 | hypothetical protein | phrog_6274 | unknown function | unknown function | 1 | 354 | 593 |
| AQT27827.1 | KY442063_p5 | hypothetical protein | phrog_29230 | unknown function | unknown function | 1 | 1652 | 1897 |
| AQT27826.1 | KY442063_p4 | hypothetical protein | phrog_29382 | unknown function | unknown function | 1 | 1439 | 1648 |
| AQT27840.1 | KY442063_p18 | major capsid protein | phrog_2006 | major head protein | head and packaging | -1 | 16495 | 17712 |
| AQT27842.1 | KY442063_p20 | hypothetical protein | phrog_34730 | unknown function | unknown function | -1 | 17929 | 18252 |
| AQT27835.1 | KY442063_p13 | minor tail protein | phrog_30677 | tail protein | tail | -1 | 11068 | 11925 |
| AQT27839.1 | KY442063_p17 | upper collar protein | phrog_2038 | upper collar connector | connector | -1 | 15467 | 16474 |