| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY471460 |
Definition |
Mycobacterium phage Jabith, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Fromanvirus; unclassified Fromanvirus. |
DB of origin |
NUCCORE |
Length |
52715 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
99 |
%GC |
63.73 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AQT28208.1 | KY471460_p15 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 12751 | 13740 |
| AQT28199.1 | KY471460_p47 | HTH DNA binding protein | phrog_517 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 31418 | 31765 |
| AQT28222.1 | KY471460_p21 | head-to-tail connector protein | phrog_123 | tail terminator | connector | 1 | 15248 | 15667 |
| AQT28271.1 | KY471460_p69 | hypothetical protein | phrog_520 | unknown function | unknown function | -1 | 41765 | 42031 |
| AQT28219.1 | KY471460_p8 | tail protein | phrog_356 | minor tail protein | tail | 1 | 5410 | 6072 |
| AQT28189.1 | KY471460_p56 | hypothetical protein | phrog_2387 | nucleotide kinase | other | -1 | 37168 | 37566 |
| AQT28258.1 | KY471460_p86 | hypothetical protein | phrog_24877 | unknown function | unknown function | -1 | 47853 | 48011 |
| AQT28262.1 | KY471460_p91 | hypothetical protein | phrog_9458 | unknown function | unknown function | -1 | 48991 | 49212 |
| AQT28260.1 | KY471460_p89 | hypothetical protein | phrog_2223 | unknown function | unknown function | -1 | 48342 | 48617 |
| AQT28233.1 | KY471460_p29 | minor tail protein | phrog_404 | minor tail protein | tail | 1 | 23125 | 23448 |
| AQT28232.1 | KY471460_p28 | minor tail protein | phrog_352 | minor tail protein | tail | 1 | 22685 | 23128 |
| AQT28187.1 | KY471460_p54 | hypothetical protein | phrog_2436 | unknown function | unknown function | -1 | 36252 | 36404 |
| AQT28237.1 | KY471460_p33 | dsDNA partitioning protein | phrog_164 | ParA-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 26172 | 26750 |
| AQT28265.1 | KY471460_p94 | hypothetical protein | phrog_3831 | unknown function | unknown function | -1 | 49654 | 49851 |
| AQT28217.1 | KY471460_p6 | minor tail protein | phrog_1260 | minor tail protein | tail | 1 | 3231 | 4196 |
| AQT28268.1 | KY471460_p97 | hypothetical protein | phrog_1392 | unknown function | unknown function | -1 | 50158 | 50880 |
| AQT28207.1 | KY471460_p14 | scaffolding protein | phrog_233 | head scaffolding protein | head and packaging | 1 | 12204 | 12725 |
| AQT28220.1 | KY471460_p9 | lysin A | phrog_317 | endolysin | lysis | 1 | 6279 | 7676 |
| AQT28282.1 | KY471460_p87 | hypothetical protein | phrog_855 | unknown function | unknown function | -1 | 48011 | 48151 |
| AQT28272.1 | KY471460_p4 | HNH endonuclease | phrog_333 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2356 | 2652 |
| AQT28280.1 | KY471460_p62 | hypothetical protein | phrog_2187 | unknown function | unknown function | -1 | 39374 | 39511 |
| AQT28194.1 | KY471460_p41 | hypothetical protein | phrog_896 | unknown function | unknown function | -1 | 28481 | 28699 |
| AQT28251.1 | KY471460_p78 | hypothetical protein | phrog_1178 | unknown function | unknown function | -1 | 45441 | 45716 |
| AQT28206.1 | KY471460_p13 | capsid maturation protease | phrog_193 | head maturation protease | head and packaging | 1 | 11323 | 12150 |
| AQT28197.1 | KY471460_p45 | hypothetical protein | phrog_18089 | unknown function | unknown function | -1 | 30844 | 31083 |
| AQT28225.1 | KY471460_p25 | tape measure protein | phrog_305 | tail length tape measure protein | tail | 1 | 17215 | 19761 |
| AQT28221.1 | KY471460_p1 | hypothetical protein | phrog_940 | nuclease | DNA, RNA and nucleotide metabolism | 1 | 367 | 1107 |
| AQT28279.1 | KY471460_p70 | DNA binding protein | phrog_6489 | unknown function | unknown function | -1 | 42237 | 42389 |
| AQT28213.1 | KY471460_p20 | head-to-tail connector protein | phrog_321 | tail completion or Neck1 protein | connector | 1 | 14889 | 15239 |
| AQT28252.1 | KY471460_p79 | hypothetical protein | phrog_1875 | unknown function | unknown function | -1 | 45713 | 45943 |
| AQT28205.1 | KY471460_p12 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 9836 | 11293 |
| AQT28195.1 | KY471460_p42 | hypothetical protein | phrog_24585 | unknown function | unknown function | -1 | 28699 | 28893 |
| AQT28202.1 | KY471460_p50 | hypothetical protein | phrog_364 | ribonucleoside reductase class II | DNA, RNA and nucleotide metabolism | -1 | 32757 | 33326 |
| AQT28229.1 | KY471460_p38 | hypothetical protein | phrog_383 | unknown function | unknown function | -1 | 27641 | 28018 |
| AQT28255.1 | KY471460_p83 | hypothetical protein | phrog_2869 | unknown function | unknown function | -1 | 46580 | 46756 |
| AQT28259.1 | KY471460_p88 | membrane domain protein | phrog_828 | unknown function | unknown function | -1 | 48148 | 48345 |
| AQT28253.1 | KY471460_p80 | hypothetical protein | phrog_8204 | unknown function | unknown function | -1 | 45940 | 46143 |
| AQT28224.1 | KY471460_p24 | tail assembly chaperone | phrog_330 | tail assembly chaperone | tail | 1 | 16414 | 16809 |
| AQT28242.1 | KY471460_p68 | hypothetical protein | phrog_2903 | unknown function | unknown function | -1 | 41482 | 41742 |
| AQT28228.1 | KY471460_p23 | tail assembly chaperone | phrog_393 | tail assembly chaperone | tail | 1 | 16414 | 17222 |
| AQT28223.1 | KY471460_p22 | major tail protein | phrog_117 | major tail protein | tail | 1 | 15685 | 16305 |
| AQT28184.1 | KY471460_p51 | ribonucleotide reductase | phrog_367 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | -1 | 33338 | 35359 |
| AQT28254.1 | KY471460_p82 | membrane domain protein | phrog_439 | site-specific recombination directionality factor RDF | integration and excision | -1 | 46274 | 46570 |
| AQT28186.1 | KY471460_p53 | helix-turn-helix DNA binding domain protein | phrog_354 | sigma-K factor | transcription regulation | -1 | 35563 | 36255 |
| AQT28246.1 | KY471460_p73 | hypothetical protein | phrog_642 | unknown function | unknown function | -1 | 43020 | 43247 |
| AQT28192.1 | KY471460_p61 | endonuclease VII | phrog_307 | endonuclease VII | DNA, RNA and nucleotide metabolism | -1 | 38926 | 39423 |
| AQT28236.1 | KY471460_p32 | hypothetical protein | phrog_24435 | unknown function | unknown function | 1 | 25679 | 25843 |
| AQT28266.1 | KY471460_p95 | hypothetical protein | phrog_519 | unknown function | unknown function | -1 | 49848 | 50024 |
| AQT28190.1 | KY471460_p57 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 37566 | 37838 |
| AQT28277.1 | KY471460_p37 | hypothetical protein | phrog_27925 | unknown function | unknown function | -1 | 27489 | 27644 |
| AQT28188.1 | KY471460_p55 | metallophosphoesterase | phrog_221 | metallo-phosphoesterase | other | -1 | 36408 | 37175 |
| AQT28214.1 | KY471460_p2 | VIP2-like toxin | phrog_5234 | unknown function | unknown function | 1 | 1188 | 2060 |
| AQT28238.1 | KY471460_p34 | dsDNA partitioning protein | phrog_2639 | Arc-like repressor | transcription regulation | 1 | 26743 | 27018 |
| AQT28264.1 | KY471460_p93 | hypothetical protein | phrog_6255 | unknown function | unknown function | -1 | 49413 | 49652 |
| AQT28201.1 | KY471460_p49 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 31980 | 32693 |
| AQT28196.1 | KY471460_p44 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 29049 | 30836 |
| AQT28216.1 | KY471460_p5 | terminase small subunit | phrog_226 | minor tail protein | tail | 1 | 2689 | 3153 |
| AQT28275.1 | KY471460_p43 | membrane domain protein | phrog_25768 | unknown function | unknown function | -1 | 28883 | 29038 |
| AQT28226.1 | KY471460_p26 | minor tail protein | phrog_106 | minor tail protein | tail | 1 | 19788 | 20810 |
| AQT28278.1 | KY471460_p36 | membrane domain protein | phrog_542 | unknown function | unknown function | -1 | 27337 | 27492 |
| AQT28261.1 | KY471460_p90 | hypothetical protein | phrog_586 | unknown function | unknown function | -1 | 48638 | 48991 |
| AQT28257.1 | KY471460_p85 | hypothetical protein | phrog_16722 | unknown function | unknown function | -1 | 47542 | 47856 |
| AQT28209.1 | KY471460_p16 | head-to-tail connector protein | phrog_748 | head-tail connector protein | connector | 1 | 13809 | 13976 |
| AQT28230.1 | KY471460_p39 | hypothetical protein | phrog_2099 | unknown function | unknown function | -1 | 28015 | 28302 |
| AQT28200.1 | KY471460_p48 | hypothetical protein | phrog_690 | unknown function | unknown function | -1 | 31758 | 31970 |
| AQT28239.1 | KY471460_p65 | nucleotide pyrophosphohydrolase | phrog_229 | MazG-like pyrophosphatase | other | -1 | 39977 | 40321 |
| AQT28244.1 | KY471460_p71 | superinfection immunity protein | phrog_1584 | unknown function | unknown function | -1 | 42386 | 42712 |
| AQT28211.1 | KY471460_p18 | head-to-tail connector protein | phrog_830 | head-tail connector protein | connector | 1 | 14354 | 14524 |
| AQT28249.1 | KY471460_p76 | immunity repressor | phrog_357 | transcriptional repressor | transcription regulation | -1 | 44531 | 45082 |
| AQT28263.1 | KY471460_p92 | hypothetical protein | phrog_1946 | unknown function | unknown function | -1 | 49209 | 49403 |
| AQT28203.1 | KY471460_p10 | holin | phrog_526 | holin | lysis | 1 | 7673 | 8059 |
| AQT28191.1 | KY471460_p58 | hypothetical protein | phrog_5618 | unknown function | unknown function | -1 | 37835 | 38068 |
| AQT28218.1 | KY471460_p7 | tail protein | phrog_1197 | tail protein | tail | 1 | 4196 | 5410 |
| AQT28227.1 | KY471460_p27 | minor tail protein | phrog_110 | minor tail protein | tail | 1 | 20807 | 22606 |
| AQT28256.1 | KY471460_p84 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 46753 | 47511 |
| AQT28235.1 | KY471460_p31 | minor tail protein | singleton | unknown function | unknown function | 1 | 25442 | 25630 |
| AQT28273.1 | KY471460_p64 | membrane domain protein | phrog_25051 | unknown function | unknown function | -1 | 39879 | 39980 |
| AQT28281.1 | KY471460_p81 | hypothetical protein | phrog_1477 | unknown function | unknown function | -1 | 46143 | 46271 |
| AQT28198.1 | KY471460_p46 | hypothetical protein | phrog_2094 | unknown function | unknown function | -1 | 31080 | 31418 |
| AQT28210.1 | KY471460_p17 | head-to-tail connector protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 13980 | 14357 |
| AQT28247.1 | KY471460_p74 | exonuclease/helicase | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 43292 | 44107 |
| AQT28234.1 | KY471460_p30 | minor tail protein | phrog_737 | minor tail protein | tail | 1 | 23449 | 25440 |
| AQT28270.1 | KY471460_p99 | hypothetical protein | phrog_1676 | unknown function | unknown function | -1 | 51215 | 51532 |
| AQT28185.1 | KY471460_p52 | hypothetical protein | phrog_499 | unknown function | unknown function | -1 | 35352 | 35576 |
| AQT28250.1 | KY471460_p77 | hypothetical protein | phrog_4294 | unknown function | unknown function | -1 | 45280 | 45441 |
| AQT28240.1 | KY471460_p66 | hypothetical protein | phrog_397 | unknown function | unknown function | -1 | 40373 | 40606 |
| AQT28276.1 | KY471460_p35 | hypothetical protein | phrog_5261 | unknown function | unknown function | 1 | 27074 | 27235 |
| AQT28248.1 | KY471460_p75 | hypothetical protein | phrog_1562 | unknown function | unknown function | -1 | 44073 | 44510 |
| AQT28204.1 | KY471460_p11 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 8076 | 9839 |
| AQT28231.1 | KY471460_p40 | hypothetical protein | phrog_10511 | unknown function | unknown function | -1 | 28299 | 28481 |
| AQT28267.1 | KY471460_p96 | hypothetical protein | phrog_2124 | unknown function | unknown function | -1 | 50021 | 50149 |
| AQT28193.1 | KY471460_p59 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38065 | 38712 |
| AQT28243.1 | KY471460_p63 | DNA processing chain protein | phrog_289 | GTP-binding domain | other | -1 | 39508 | 39882 |
| AQT28241.1 | KY471460_p67 | dsDNA helicase | phrog_243 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 40698 | 41495 |
| AQT28215.1 | KY471460_p3 | hypothetical protein | phrog_3585 | immunity protein | other | 1 | 2057 | 2359 |
| AQT28212.1 | KY471460_p19 | head-to-tail connector protein | phrog_320 | head closure Hc1 | connector | 1 | 14521 | 14889 |
| AQT28274.1 | KY471460_p60 | DNA primase | phrog_360 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 38540 | 38929 |
| AQT28245.1 | KY471460_p72 | hypothetical protein | phrog_3851 | unknown function | unknown function | -1 | 42709 | 43023 |
| AQT28269.1 | KY471460_p98 | hypothetical protein | phrog_2499 | unknown function | unknown function | -1 | 50883 | 51077 |