| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY514264 |
Definition |
Pectobacterium phage vB_PatP_CB1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
NUCCORE |
Length |
76041 |
Host Name |
Pectobacterium atrosepticum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
97 |
%GC |
48.69 |
Number of singletons |
5 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARB11732.1 | KY514264_p5 | membrane protein | phrog_31083 | unknown function | unknown function | 1 | 2140 | 2247 |
| ARB11812.1 | KY514264_p85 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 66456 | 66782 |
| ARB11809.1 | KY514264_p82 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 63294 | 63875 |
| ARB11818.1 | KY514264_p91 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 71986 | 73599 |
| ARB11765.1 | KY514264_p38 | hypothetical protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16236 | 17387 |
| ARB11737.1 | KY514264_p10 | hypothetical protein | phrog_25598 | unknown function | unknown function | 1 | 3444 | 3758 |
| ARB11784.1 | KY514264_p57 | tail protein | phrog_4069 | Hoc-like head decoration | head and packaging | -1 | 31805 | 32260 |
| ARB11764.1 | KY514264_p37 | hypothetical protein | phrog_27802 | unknown function | unknown function | 1 | 15680 | 16267 |
| ARB11807.1 | KY514264_p80 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 59656 | 62430 |
| ARB11733.1 | KY514264_p6 | hypothetical protein | phrog_22540 | unknown function | unknown function | 1 | 2244 | 2594 |
| ARB11814.1 | KY514264_p87 | nucleoside triphosphate pyrophosphohydrolase | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 69155 | 69703 |
| ARB11757.1 | KY514264_p30 | hypothetical protein | phrog_27839 | unknown function | unknown function | 1 | 12161 | 12475 |
| ARB11756.1 | KY514264_p29 | hypothetical protein | phrog_18415 | unknown function | unknown function | 1 | 11970 | 12164 |
| ARB11772.1 | KY514264_p45 | rIIB-like protein | phrog_2886 | RIIB lysis inhibitor | lysis | 1 | 23273 | 25108 |
| ARB11738.1 | KY514264_p11 | HNH endonuclease | phrog_374 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 3755 | 4246 |
| ARB11813.1 | KY514264_p86 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 66850 | 69087 |
| ARB11810.1 | KY514264_p83 | major capsid protein | phrog_1357 | major head protein | head and packaging | -1 | 63964 | 65136 |
| ARB11752.1 | KY514264_p25 | hypothetical protein | phrog_24414 | unknown function | unknown function | 1 | 10473 | 10715 |
| ARB11823.1 | KY514264_p96 | membrane protein | singleton | unknown function | unknown function | 1 | 75191 | 75295 |
| ARB11816.1 | KY514264_p89 | hypothetical protein | phrog_322 | unknown function | unknown function | 1 | 70648 | 71040 |
| ARB11804.1 | KY514264_p77 | virion associated RNA polymerase | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 46984 | 58065 |
| ARB11739.1 | KY514264_p12 | hypothetical protein | phrog_2072 | unknown function | unknown function | 1 | 4239 | 4619 |
| ARB11787.1 | KY514264_p60 | lysozyme | phrog_90 | endolysin | lysis | -1 | 33048 | 33524 |
| ARB11785.1 | KY514264_p58 | endopeptidase Rz | phrog_312 | Rz-like spanin | lysis | -1 | 32343 | 32840 |
| ARB11759.1 | KY514264_p32 | hypothetical protein | phrog_24795 | unknown function | unknown function | 1 | 13011 | 13112 |
| ARB11770.1 | KY514264_p43 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 20347 | 20853 |
| ARB11742.1 | KY514264_p15 | hypothetical protein | phrog_27528 | unknown function | unknown function | 1 | 5176 | 5469 |
| ARB11791.1 | KY514264_p64 | hypothetical protein | phrog_24298 | unknown function | unknown function | 1 | 38255 | 38422 |
| ARB11781.1 | KY514264_p54 | hypothetical protein | phrog_27500 | unknown function | unknown function | 1 | 30852 | 31037 |
| ARB11768.1 | KY514264_p41 | hypothetical protein | phrog_4881 | unknown function | unknown function | 1 | 19229 | 19753 |
| ARB11743.1 | KY514264_p16 | hypothetical protein | phrog_24685 | unknown function | unknown function | 1 | 5469 | 5792 |
| ARB11758.1 | KY514264_p31 | hypothetical protein | phrog_23299 | unknown function | unknown function | 1 | 12731 | 12949 |
| ARB11808.1 | KY514264_p81 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | -1 | 62494 | 63282 |
| ARB11799.1 | KY514264_p72 | single stranded DNA binding protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 44268 | 45032 |
| ARB11802.1 | KY514264_p75 | hypothetical protein | phrog_27468 | unknown function | unknown function | 1 | 45993 | 46781 |
| ARB11746.1 | KY514264_p19 | hypothetical protein | phrog_24678 | unknown function | unknown function | 1 | 6463 | 6744 |
| ARB11788.1 | KY514264_p61 | structural protein | phrog_26143 | virion structural protein | head and packaging | -1 | 33721 | 36651 |
| ARB11740.1 | KY514264_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4790 | 4906 |
| ARB11803.1 | KY514264_p76 | membrane protein | phrog_22030 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 46791 | 46970 |
| ARB11776.1 | KY514264_p49 | hypothetical protein | phrog_415 | polynucleotide kinase | other | 1 | 28285 | 28758 |
| ARB11819.1 | KY514264_p92 | hypothetical protein | phrog_7696 | unknown function | unknown function | -1 | 73592 | 73765 |
| ARB11741.1 | KY514264_p14 | hypothetical protein | phrog_23352 | unknown function | unknown function | 1 | 4910 | 5179 |
| ARB11734.1 | KY514264_p7 | membrane protein | phrog_23895 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 2738 | 2908 |
| ARB11729.1 | KY514264_p2 | hypothetical protein | phrog_12748 | unknown function | unknown function | 1 | 915 | 1196 |
| ARB11824.1 | KY514264_p97 | hypothetical protein | phrog_16196 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 75385 | 75783 |
| ARB11735.1 | KY514264_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2954 | 3229 |
| ARB11755.1 | KY514264_p28 | hypothetical protein | phrog_26890 | unknown function | unknown function | 1 | 11402 | 11989 |
| ARB11782.1 | KY514264_p55 | hypothetical protein | phrog_268 | unknown function | unknown function | 1 | 31034 | 31303 |
| ARB11789.1 | KY514264_p62 | structural protein | phrog_20500 | tail protein | tail | -1 | 36663 | 37382 |
| ARB11800.1 | KY514264_p73 | hypothetical protein | phrog_15896 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 45096 | 45431 |
| ARB11775.1 | KY514264_p48 | hypothetical protein | phrog_23045 | unknown function | unknown function | 1 | 28116 | 28307 |
| ARB11801.1 | KY514264_p74 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 45424 | 45987 |
| ARB11805.1 | KY514264_p78 | structural protein | phrog_24558 | virion structural protein | head and packaging | -1 | 58068 | 59234 |
| ARB11797.1 | KY514264_p70 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 43005 | 43742 |
| ARB11762.1 | KY514264_p35 | hypothetical protein | phrog_1297 | ATPase | other | 1 | 13944 | 15014 |
| ARB11753.1 | KY514264_p26 | hypothetical protein | phrog_24879 | unknown function | unknown function | 1 | 10718 | 10960 |
| ARB11798.1 | KY514264_p71 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43729 | 44250 |
| ARB11731.1 | KY514264_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1831 | 2070 |
| ARB11794.1 | KY514264_p67 | hypothetical protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 39972 | 42134 |
| ARB11822.1 | KY514264_p95 | hypothetical protein | phrog_25107 | unknown function | unknown function | -1 | 74781 | 75086 |
| ARB11747.1 | KY514264_p20 | hypothetical protein | phrog_6271 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 6823 | 7119 |
| ARB11745.1 | KY514264_p18 | hypothetical protein | phrog_22111 | unknown function | unknown function | 1 | 6094 | 6390 |
| ARB11760.1 | KY514264_p33 | HNH endonuclease | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 13109 | 13471 |
| ARB11779.1 | KY514264_p52 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 29530 | 30042 |
| ARB11736.1 | KY514264_p9 | hypothetical protein | phrog_23171 | unknown function | unknown function | 1 | 3232 | 3447 |
| ARB11795.1 | KY514264_p68 | hypothetical protein | phrog_18865 | unknown function | unknown function | 1 | 42142 | 42693 |
| ARB11786.1 | KY514264_p59 | holin | phrog_1356 | holin | lysis | -1 | 32815 | 33051 |
| ARB11821.1 | KY514264_p94 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 74500 | 74760 |
| ARB11820.1 | KY514264_p93 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 73758 | 74444 |
| ARB11761.1 | KY514264_p34 | lipoprotein | phrog_26640 | lipoprotein | other | 1 | 13468 | 13854 |
| ARB11750.1 | KY514264_p23 | RNAP2-like protein | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 8612 | 9892 |
| ARB11766.1 | KY514264_p39 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 17389 | 17856 |
| ARB11771.1 | KY514264_p44 | rIIA-like protein | phrog_2979 | RIIA lysis inhibitor | lysis | 1 | 20850 | 23276 |
| ARB11763.1 | KY514264_p36 | hypothetical protein | phrog_23180 | unknown function | unknown function | 1 | 15057 | 15665 |
| ARB11790.1 | KY514264_p63 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 37480 | 38247 |
| ARB11754.1 | KY514264_p27 | hypothetical protein | phrog_22755 | unknown function | unknown function | 1 | 11206 | 11415 |
| ARB11767.1 | KY514264_p40 | helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 17874 | 19229 |
| ARB11744.1 | KY514264_p17 | hypothetical protein | phrog_27457 | unknown function | unknown function | 1 | 5789 | 6094 |
| ARB11774.1 | KY514264_p47 | lipoprotein | phrog_23263 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 27902 | 28087 |
| ARB11728.1 | KY514264_p1 | membrane protein | phrog_16196 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 141 | 389 |
| ARB11769.1 | KY514264_p42 | hypothetical protein | phrog_22904 | unknown function | unknown function | 1 | 19750 | 20088 |
| ARB11817.1 | KY514264_p90 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | -1 | 71072 | 71977 |
| ARB11751.1 | KY514264_p24 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 9937 | 10470 |
| ARB11778.1 | KY514264_p51 | membrane protein | phrog_6854 | holin | lysis | 1 | 29172 | 29492 |
| ARB11777.1 | KY514264_p50 | hypothetical protein | phrog_24960 | unknown function | unknown function | 1 | 28766 | 29113 |
| ARB11749.1 | KY514264_p22 | RNAP1-like protein | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 7618 | 8601 |
| ARB11796.1 | KY514264_p69 | hypothetical protein | phrog_21467 | unknown function | unknown function | 1 | 42793 | 43005 |
| ARB11773.1 | KY514264_p46 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 25190 | 27901 |
| ARB11793.1 | KY514264_p66 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 38972 | 39961 |
| ARB11815.1 | KY514264_p88 | hypothetical protein | phrog_6022 | unknown function | unknown function | 1 | 70214 | 70459 |
| ARB11811.1 | KY514264_p84 | tail measure protein | phrog_2120 | tail length tape measure protein | tail | -1 | 65151 | 66365 |
| ARB11730.1 | KY514264_p3 | hypothetical protein | phrog_23646 | unknown function | unknown function | 1 | 1262 | 1762 |
| ARB11780.1 | KY514264_p53 | DNA methylase | phrog_56 | DNA methyltransferase | other | 1 | 30039 | 30845 |
| ARB11792.1 | KY514264_p65 | hypothetical protein | phrog_27924 | unknown function | unknown function | 1 | 38448 | 38972 |
| ARB11783.1 | KY514264_p56 | hypothetical protein | phrog_22643 | unknown function | unknown function | 1 | 31527 | 31760 |
| ARB11806.1 | KY514264_p79 | hypothetical protein | phrog_22703 | unknown function | unknown function | -1 | 59234 | 59647 |
| ARB11748.1 | KY514264_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7165 | 7608 |