Genomic map of Pectobacterium phage vB_PatP_CB1 (KY514264)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY514264
Definition
Pectobacterium phage vB_PatP_CB1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
DB of origin
NUCCORE
Length
76041
Host Name
Pectobacterium atrosepticum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
97
%GC
48.69
Number of singletons
5
Number of paralogs
4

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARB11732.1 KY514264_p5 membrane protein phrog_31083 unknown function unknown function 1 2140 2247
ARB11812.1 KY514264_p85 hypothetical protein phrog_2346 unknown function unknown function -1 66456 66782
ARB11809.1 KY514264_p82 hypothetical protein phrog_2130 unknown function unknown function -1 63294 63875
ARB11818.1 KY514264_p91 terminase large subunit phrog_38 terminase large subunit head and packaging -1 71986 73599
ARB11765.1 KY514264_p38 hypothetical protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16236 17387
ARB11737.1 KY514264_p10 hypothetical protein phrog_25598 unknown function unknown function 1 3444 3758
ARB11784.1 KY514264_p57 tail protein phrog_4069 Hoc-like head decoration head and packaging -1 31805 32260
ARB11764.1 KY514264_p37 hypothetical protein phrog_27802 unknown function unknown function 1 15680 16267
ARB11807.1 KY514264_p80 hypothetical protein phrog_2220 unknown function unknown function -1 59656 62430
ARB11733.1 KY514264_p6 hypothetical protein phrog_22540 unknown function unknown function 1 2244 2594
ARB11814.1 KY514264_p87 nucleoside triphosphate pyrophosphohydrolase phrog_671 nucleotide pyrophosphohydrolase other 1 69155 69703
ARB11757.1 KY514264_p30 hypothetical protein phrog_27839 unknown function unknown function 1 12161 12475
ARB11756.1 KY514264_p29 hypothetical protein phrog_18415 unknown function unknown function 1 11970 12164
ARB11772.1 KY514264_p45 rIIB-like protein phrog_2886 RIIB lysis inhibitor lysis 1 23273 25108
ARB11738.1 KY514264_p11 HNH endonuclease phrog_374 HNH endonuclease DNA, RNA and nucleotide metabolism 1 3755 4246
ARB11813.1 KY514264_p86 portal protein phrog_1216 portal protein head and packaging -1 66850 69087
ARB11810.1 KY514264_p83 major capsid protein phrog_1357 major head protein head and packaging -1 63964 65136
ARB11752.1 KY514264_p25 hypothetical protein phrog_24414 unknown function unknown function 1 10473 10715
ARB11823.1 KY514264_p96 membrane protein singleton unknown function unknown function 1 75191 75295
ARB11816.1 KY514264_p89 hypothetical protein phrog_322 unknown function unknown function 1 70648 71040
ARB11804.1 KY514264_p77 virion associated RNA polymerase phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism -1 46984 58065
ARB11739.1 KY514264_p12 hypothetical protein phrog_2072 unknown function unknown function 1 4239 4619
ARB11787.1 KY514264_p60 lysozyme phrog_90 endolysin lysis -1 33048 33524
ARB11785.1 KY514264_p58 endopeptidase Rz phrog_312 Rz-like spanin lysis -1 32343 32840
ARB11759.1 KY514264_p32 hypothetical protein phrog_24795 unknown function unknown function 1 13011 13112
ARB11770.1 KY514264_p43 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 20347 20853
ARB11742.1 KY514264_p15 hypothetical protein phrog_27528 unknown function unknown function 1 5176 5469
ARB11791.1 KY514264_p64 hypothetical protein phrog_24298 unknown function unknown function 1 38255 38422
ARB11781.1 KY514264_p54 hypothetical protein phrog_27500 unknown function unknown function 1 30852 31037
ARB11768.1 KY514264_p41 hypothetical protein phrog_4881 unknown function unknown function 1 19229 19753
ARB11743.1 KY514264_p16 hypothetical protein phrog_24685 unknown function unknown function 1 5469 5792
ARB11758.1 KY514264_p31 hypothetical protein phrog_23299 unknown function unknown function 1 12731 12949
ARB11808.1 KY514264_p81 hypothetical protein phrog_2050 virion structural protein head and packaging -1 62494 63282
ARB11799.1 KY514264_p72 single stranded DNA binding protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 44268 45032
ARB11802.1 KY514264_p75 hypothetical protein phrog_27468 unknown function unknown function 1 45993 46781
ARB11746.1 KY514264_p19 hypothetical protein phrog_24678 unknown function unknown function 1 6463 6744
ARB11788.1 KY514264_p61 structural protein phrog_26143 virion structural protein head and packaging -1 33721 36651
ARB11740.1 KY514264_p13 hypothetical protein singleton unknown function unknown function 1 4790 4906
ARB11803.1 KY514264_p76 membrane protein phrog_22030 membrane protein moron, auxiliary metabolic gene and host takeover 1 46791 46970
ARB11776.1 KY514264_p49 hypothetical protein phrog_415 polynucleotide kinase other 1 28285 28758
ARB11819.1 KY514264_p92 hypothetical protein phrog_7696 unknown function unknown function -1 73592 73765
ARB11741.1 KY514264_p14 hypothetical protein phrog_23352 unknown function unknown function 1 4910 5179
ARB11734.1 KY514264_p7 membrane protein phrog_23895 membrane protein moron, auxiliary metabolic gene and host takeover 1 2738 2908
ARB11729.1 KY514264_p2 hypothetical protein phrog_12748 unknown function unknown function 1 915 1196
ARB11824.1 KY514264_p97 hypothetical protein phrog_16196 membrane protein moron, auxiliary metabolic gene and host takeover 1 75385 75783
ARB11735.1 KY514264_p8 hypothetical protein singleton unknown function unknown function 1 2954 3229
ARB11755.1 KY514264_p28 hypothetical protein phrog_26890 unknown function unknown function 1 11402 11989
ARB11782.1 KY514264_p55 hypothetical protein phrog_268 unknown function unknown function 1 31034 31303
ARB11789.1 KY514264_p62 structural protein phrog_20500 tail protein tail -1 36663 37382
ARB11800.1 KY514264_p73 hypothetical protein phrog_15896 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 45096 45431
ARB11775.1 KY514264_p48 hypothetical protein phrog_23045 unknown function unknown function 1 28116 28307
ARB11801.1 KY514264_p74 hypothetical protein phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 45424 45987
ARB11805.1 KY514264_p78 structural protein phrog_24558 virion structural protein head and packaging -1 58068 59234
ARB11797.1 KY514264_p70 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 43005 43742
ARB11762.1 KY514264_p35 hypothetical protein phrog_1297 ATPase other 1 13944 15014
ARB11753.1 KY514264_p26 hypothetical protein phrog_24879 unknown function unknown function 1 10718 10960
ARB11798.1 KY514264_p71 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43729 44250
ARB11731.1 KY514264_p4 hypothetical protein singleton unknown function unknown function 1 1831 2070
ARB11794.1 KY514264_p67 hypothetical protein phrog_2135 DNA primase DNA, RNA and nucleotide metabolism 1 39972 42134
ARB11822.1 KY514264_p95 hypothetical protein phrog_25107 unknown function unknown function -1 74781 75086
ARB11747.1 KY514264_p20 hypothetical protein phrog_6271 toxin moron, auxiliary metabolic gene and host takeover 1 6823 7119
ARB11745.1 KY514264_p18 hypothetical protein phrog_22111 unknown function unknown function 1 6094 6390
ARB11760.1 KY514264_p33 HNH endonuclease phrog_1872 endonuclease DNA, RNA and nucleotide metabolism 1 13109 13471
ARB11779.1 KY514264_p52 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 29530 30042
ARB11736.1 KY514264_p9 hypothetical protein phrog_23171 unknown function unknown function 1 3232 3447
ARB11795.1 KY514264_p68 hypothetical protein phrog_18865 unknown function unknown function 1 42142 42693
ARB11786.1 KY514264_p59 holin phrog_1356 holin lysis -1 32815 33051
ARB11821.1 KY514264_p94 hypothetical protein phrog_419 unknown function unknown function 1 74500 74760
ARB11820.1 KY514264_p93 hypothetical protein phrog_2109 unknown function unknown function -1 73758 74444
ARB11761.1 KY514264_p34 lipoprotein phrog_26640 lipoprotein other 1 13468 13854
ARB11750.1 KY514264_p23 RNAP2-like protein phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism 1 8612 9892
ARB11766.1 KY514264_p39 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 17389 17856
ARB11771.1 KY514264_p44 rIIA-like protein phrog_2979 RIIA lysis inhibitor lysis 1 20850 23276
ARB11763.1 KY514264_p36 hypothetical protein phrog_23180 unknown function unknown function 1 15057 15665
ARB11790.1 KY514264_p63 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 37480 38247
ARB11754.1 KY514264_p27 hypothetical protein phrog_22755 unknown function unknown function 1 11206 11415
ARB11767.1 KY514264_p40 helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 17874 19229
ARB11744.1 KY514264_p17 hypothetical protein phrog_27457 unknown function unknown function 1 5789 6094
ARB11774.1 KY514264_p47 lipoprotein phrog_23263 membrane protein moron, auxiliary metabolic gene and host takeover 1 27902 28087
ARB11728.1 KY514264_p1 membrane protein phrog_16196 membrane protein moron, auxiliary metabolic gene and host takeover 1 141 389
ARB11769.1 KY514264_p42 hypothetical protein phrog_22904 unknown function unknown function 1 19750 20088
ARB11817.1 KY514264_p90 hypothetical protein phrog_2125 virion structural protein head and packaging -1 71072 71977
ARB11751.1 KY514264_p24 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 9937 10470
ARB11778.1 KY514264_p51 membrane protein phrog_6854 holin lysis 1 29172 29492
ARB11777.1 KY514264_p50 hypothetical protein phrog_24960 unknown function unknown function 1 28766 29113
ARB11749.1 KY514264_p22 RNAP1-like protein phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism 1 7618 8601
ARB11796.1 KY514264_p69 hypothetical protein phrog_21467 unknown function unknown function 1 42793 43005
ARB11773.1 KY514264_p46 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 25190 27901
ARB11793.1 KY514264_p66 hypothetical protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism 1 38972 39961
ARB11815.1 KY514264_p88 hypothetical protein phrog_6022 unknown function unknown function 1 70214 70459
ARB11811.1 KY514264_p84 tail measure protein phrog_2120 tail length tape measure protein tail -1 65151 66365
ARB11730.1 KY514264_p3 hypothetical protein phrog_23646 unknown function unknown function 1 1262 1762
ARB11780.1 KY514264_p53 DNA methylase phrog_56 DNA methyltransferase other 1 30039 30845
ARB11792.1 KY514264_p65 hypothetical protein phrog_27924 unknown function unknown function 1 38448 38972
ARB11783.1 KY514264_p56 hypothetical protein phrog_22643 unknown function unknown function 1 31527 31760
ARB11806.1 KY514264_p79 hypothetical protein phrog_22703 unknown function unknown function -1 59234 59647
ARB11748.1 KY514264_p21 hypothetical protein singleton unknown function unknown function 1 7165 7608