Genomic map of Pectobacterium phage vB_PatP_CB3 (KY514265)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY514265
Definition
Pectobacterium phage vB_PatP_CB3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
DB of origin
NUCCORE
Length
76169
Host Name
Pectobacterium atrosepticum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
102
%GC
48.66
Number of singletons
4
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARB11913.1 KY514265_p89 tape measure protein phrog_2120 tail length tape measure protein tail -1 65460 66641
ARB11890.1 KY514265_p66 hypothetical protein phrog_26143 virion structural protein head and packaging -1 34030 36960
ARB11919.1 KY514265_p95 hypothetical protein phrog_322 unknown function unknown function 1 70830 71222
ARB11846.1 KY514265_p22 hypothetical protein phrog_9585 unknown function unknown function 1 7321 7599
ARB11828.1 KY514265_p4 membrane protein singleton unknown function unknown function 1 1874 2011
ARB11884.1 KY514265_p60 hypothetical protein phrog_22643 unknown function unknown function 1 31836 32069
ARB11851.1 KY514265_p27 hypothetical protein phrog_33723 unknown function unknown function 1 10547 10822
ARB11883.1 KY514265_p59 hypothetical protein phrog_268 unknown function unknown function 1 31343 31612
ARB11863.1 KY514265_p39 hypothetical protein phrog_23180 unknown function unknown function 1 15410 16018
ARB11877.1 KY514265_p53 nucleotidase phrog_415 polynucleotide kinase other 1 28594 29067
ARB11849.1 KY514265_p25 RNAP2-like protein phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism 1 9026 10306
ARB11891.1 KY514265_p67 tail protein phrog_20500 tail protein tail -1 36972 37691
ARB11922.1 KY514265_p98 membrane protein phrog_7696 unknown function unknown function -1 73774 73947
ARB11878.1 KY514265_p54 hypothetical protein phrog_24960 unknown function unknown function 1 29075 29422
ARB11829.1 KY514265_p5 hypothetical protein phrog_22540 unknown function unknown function 1 2008 2358
ARB11872.1 KY514265_p48 rIIB-like protein phrog_2979 RIIA lysis inhibitor lysis 1 20895 23321
ARB11873.1 KY514265_p49 DNA polymerase I phrog_2886 RIIB lysis inhibitor lysis 1 23318 25417
ARB11845.1 KY514265_p21 hypothetical protein phrog_6271 toxin moron, auxiliary metabolic gene and host takeover 1 6979 7275
ARB11894.1 KY514265_p70 hypothetical protein phrog_27924 unknown function unknown function 1 38757 39281
ARB11904.1 KY514265_p80 hypothetical protein phrog_27468 unknown function unknown function 1 46302 47090
ARB11895.1 KY514265_p71 hypothetical protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism 1 39281 40270
ARB11879.1 KY514265_p55 membrane protein phrog_6854 holin lysis 1 29481 29801
ARB11906.1 KY514265_p82 virion associated RNA polymerase phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism -1 47293 58374
ARB11838.1 KY514265_p14 hypothetical protein phrog_23352 unknown function unknown function 1 4782 5051
ARB11833.1 KY514265_p9 hypothetical protein phrog_33131 unknown function unknown function 1 2957 3250
ARB11855.1 KY514265_p31 hypothetical protein phrog_26890 unknown function unknown function 1 11754 12341
ARB11836.1 KY514265_p12 hypothetical protein phrog_2072 unknown function unknown function 1 4120 4491
ARB11892.1 KY514265_p68 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 37789 38556
ARB11886.1 KY514265_p62 endopeptidase phrog_312 Rz-like spanin lysis -1 32652 33149
ARB11837.1 KY514265_p13 hypothetical protein phrog_30060 unknown function unknown function 1 4476 4778
ARB11858.1 KY514265_p34 hypothetical protein phrog_23299 unknown function unknown function 1 13087 13302
ARB11897.1 KY514265_p73 hypothetical protein phrog_18865 unknown function unknown function 1 42451 43002
ARB11825.1 KY514265_p1 hypothetical protein phrog_16196 membrane protein moron, auxiliary metabolic gene and host takeover 1 45 443
ARB11896.1 KY514265_p72 hypothetical protein phrog_2135 DNA primase DNA, RNA and nucleotide metabolism 1 40281 42443
ARB11911.1 KY514265_p87 hypothetical protein phrog_2130 unknown function unknown function -1 63603 64184
ARB11853.1 KY514265_p29 hypothetical protein phrog_24879 unknown function unknown function 1 11067 11312
ARB11914.1 KY514265_p90 hypothetical protein phrog_2346 unknown function unknown function -1 66638 66964
ARB11848.1 KY514265_p24 RNAP1-like protein phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism 1 8032 9015
ARB11865.1 KY514265_p41 hypothetical protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16571 17740
ARB11839.1 KY514265_p15 hypothetical protein phrog_27528 unknown function unknown function 1 5048 5341
ARB11909.1 KY514265_p85 hypothetical protein phrog_2220 unknown function unknown function -1 59965 62739
ARB11871.1 KY514265_p47 rIIA-like protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 20392 20898
ARB11917.1 KY514265_p93 hypothetical protein singleton unknown function unknown function -1 70311 70397
ARB11827.1 KY514265_p3 hypothetical protein phrog_23646 unknown function unknown function 1 1341 1841
ARB11869.1 KY514265_p45 hypothetical protein phrog_22904 unknown function unknown function 1 19761 20129
ARB11898.1 KY514265_p74 hypothetical protein phrog_21467 unknown function unknown function 1 43102 43314
ARB11880.1 KY514265_p56 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 29839 30351
ARB11840.1 KY514265_p16 hypothetical protein phrog_24685 unknown function unknown function 1 5341 5664
ARB11856.1 KY514265_p32 hypothetical protein phrog_18415 unknown function unknown function 1 12322 12516
ARB11841.1 KY514265_p17 hypothetical protein phrog_35909 unknown function unknown function 1 5661 5951
ARB11881.1 KY514265_p57 DNA methylase phrog_56 DNA methyltransferase other 1 30348 31154
ARB11850.1 KY514265_p26 hypothetical protein phrog_30282 unknown function unknown function 1 10309 10500
ARB11870.1 KY514265_p46 hypothetical protein phrog_7471 unknown function unknown function 1 20129 20320
ARB11915.1 KY514265_p91 hypothetical protein phrog_1216 portal protein head and packaging -1 67032 69269
ARB11864.1 KY514265_p40 hypothetical protein phrog_27802 unknown function unknown function 1 16069 16620
ARB11862.1 KY514265_p38 hypothetical protein phrog_1297 ATPase other 1 14297 15367
ARB11910.1 KY514265_p86 hypothetical protein phrog_2050 virion structural protein head and packaging -1 62803 63591
ARB11834.1 KY514265_p10 hypothetical protein phrog_25598 unknown function unknown function 1 3228 3470
ARB11842.1 KY514265_p18 hypothetical protein phrog_27457 unknown function unknown function 1 5930 6250
ARB11926.1 KY514265_p102 hypothetical protein phrog_16196 membrane protein moron, auxiliary metabolic gene and host takeover 1 75567 75965
ARB11830.1 KY514265_p6 hypothetical protein phrog_37173 unknown function unknown function 1 2355 2501
ARB11847.1 KY514265_p23 hypothetical protein phrog_35035 unknown function unknown function 1 7609 8022
ARB11882.1 KY514265_p58 hypothetical protein phrog_27500 unknown function unknown function 1 31161 31346
ARB11844.1 KY514265_p20 hypothetical protein phrog_24678 unknown function unknown function 1 6619 6900
ARB11885.1 KY514265_p61 tail protein phrog_4069 Hoc-like head decoration head and packaging -1 32114 32569
ARB11902.1 KY514265_p78 host nuclease inhibitor protein phrog_15896 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 45405 45740
ARB11907.1 KY514265_p83 hypothetical protein phrog_24558 virion structural protein head and packaging -1 58377 59543
ARB11924.1 KY514265_p100 hypothetical protein phrog_419 unknown function unknown function 1 74682 74942
ARB11832.1 KY514265_p8 hypothetical protein phrog_23171 unknown function unknown function 1 2718 2960
ARB11905.1 KY514265_p81 membrane protein phrog_22030 membrane protein moron, auxiliary metabolic gene and host takeover 1 47100 47279
ARB11912.1 KY514265_p88 major virion protein phrog_1357 major head protein head and packaging -1 64273 65445
ARB11831.1 KY514265_p7 membrane protein phrog_23895 membrane protein moron, auxiliary metabolic gene and host takeover 1 2502 2672
ARB11857.1 KY514265_p33 hypothetical protein phrog_27839 unknown function unknown function 1 12513 12821
ARB11901.1 KY514265_p77 hypothetical protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 44577 45341
ARB11867.1 KY514265_p43 DNA helicase singleton unknown function unknown function 1 19034 19240
ARB11923.1 KY514265_p99 hypothetical protein phrog_2109 unknown function unknown function -1 73940 74626
ARB11868.1 KY514265_p44 hypothetical protein phrog_4881 unknown function unknown function 1 19240 19764
ARB11874.1 KY514265_p50 hypothetical protein phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 25499 28210
ARB11854.1 KY514265_p30 hypothetical protein phrog_22755 unknown function unknown function 1 11558 11767
ARB11861.1 KY514265_p37 lipoprotein phrog_26640 lipoprotein other 1 13821 14207
ARB11908.1 KY514265_p84 hypothetical protein phrog_22703 unknown function unknown function -1 59543 59956
ARB11859.1 KY514265_p35 hypothetical protein phrog_24795 unknown function unknown function 1 13364 13465
ARB11876.1 KY514265_p52 hypothetical protein phrog_23045 unknown function unknown function 1 28425 28616
ARB11843.1 KY514265_p19 hypothetical protein phrog_22111 unknown function unknown function 1 6250 6546
ARB11875.1 KY514265_p51 lipoprotein phrog_23263 membrane protein moron, auxiliary metabolic gene and host takeover 1 28211 28396
ARB11866.1 KY514265_p42 DNA helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 17758 19053
ARB11918.1 KY514265_p94 hypothetical protein phrog_6022 unknown function unknown function 1 70396 70641
ARB11860.1 KY514265_p36 HNH endonuclease phrog_1872 endonuclease DNA, RNA and nucleotide metabolism 1 13462 13824
ARB11903.1 KY514265_p79 hypothetical protein phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 45733 46296
ARB11887.1 KY514265_p63 hypothetical protein phrog_1356 holin lysis -1 33124 33360
ARB11835.1 KY514265_p11 hypothetical protein phrog_30404 unknown function unknown function 1 3470 4123
ARB11916.1 KY514265_p92 nucleoside triphosphate pyrophosphohydrolase phrog_671 nucleotide pyrophosphohydrolase other 1 69337 69885
ARB11920.1 KY514265_p96 hypothetical protein phrog_2125 virion structural protein head and packaging -1 71254 72159
ARB11921.1 KY514265_p97 terminase large subunit phrog_38 terminase large subunit head and packaging -1 72168 73781
ARB11925.1 KY514265_p101 hypothetical protein phrog_25107 unknown function unknown function -1 74963 75268
ARB11899.1 KY514265_p75 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 43314 44051
ARB11888.1 KY514265_p64 lysozyme phrog_90 endolysin lysis -1 33357 33833
ARB11900.1 KY514265_p76 HNH homing endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44038 44559
ARB11893.1 KY514265_p69 hypothetical protein phrog_24298 unknown function unknown function 1 38564 38731
ARB11852.1 KY514265_p28 hypothetical protein phrog_24414 unknown function unknown function 1 10870 11064
ARB11889.1 KY514265_p65 hypothetical protein singleton unknown function unknown function -1 33877 33975
ARB11826.1 KY514265_p2 hypothetical protein phrog_12748 unknown function unknown function 1 1011 1292