| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY514265 |
Definition |
Pectobacterium phage vB_PatP_CB3, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
NUCCORE |
Length |
76169 |
Host Name |
Pectobacterium atrosepticum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
102 |
%GC |
48.66 |
Number of singletons |
4 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARB11913.1 | KY514265_p89 | tape measure protein | phrog_2120 | tail length tape measure protein | tail | -1 | 65460 | 66641 |
| ARB11890.1 | KY514265_p66 | hypothetical protein | phrog_26143 | virion structural protein | head and packaging | -1 | 34030 | 36960 |
| ARB11919.1 | KY514265_p95 | hypothetical protein | phrog_322 | unknown function | unknown function | 1 | 70830 | 71222 |
| ARB11846.1 | KY514265_p22 | hypothetical protein | phrog_9585 | unknown function | unknown function | 1 | 7321 | 7599 |
| ARB11828.1 | KY514265_p4 | membrane protein | singleton | unknown function | unknown function | 1 | 1874 | 2011 |
| ARB11884.1 | KY514265_p60 | hypothetical protein | phrog_22643 | unknown function | unknown function | 1 | 31836 | 32069 |
| ARB11851.1 | KY514265_p27 | hypothetical protein | phrog_33723 | unknown function | unknown function | 1 | 10547 | 10822 |
| ARB11883.1 | KY514265_p59 | hypothetical protein | phrog_268 | unknown function | unknown function | 1 | 31343 | 31612 |
| ARB11863.1 | KY514265_p39 | hypothetical protein | phrog_23180 | unknown function | unknown function | 1 | 15410 | 16018 |
| ARB11877.1 | KY514265_p53 | nucleotidase | phrog_415 | polynucleotide kinase | other | 1 | 28594 | 29067 |
| ARB11849.1 | KY514265_p25 | RNAP2-like protein | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 9026 | 10306 |
| ARB11891.1 | KY514265_p67 | tail protein | phrog_20500 | tail protein | tail | -1 | 36972 | 37691 |
| ARB11922.1 | KY514265_p98 | membrane protein | phrog_7696 | unknown function | unknown function | -1 | 73774 | 73947 |
| ARB11878.1 | KY514265_p54 | hypothetical protein | phrog_24960 | unknown function | unknown function | 1 | 29075 | 29422 |
| ARB11829.1 | KY514265_p5 | hypothetical protein | phrog_22540 | unknown function | unknown function | 1 | 2008 | 2358 |
| ARB11872.1 | KY514265_p48 | rIIB-like protein | phrog_2979 | RIIA lysis inhibitor | lysis | 1 | 20895 | 23321 |
| ARB11873.1 | KY514265_p49 | DNA polymerase I | phrog_2886 | RIIB lysis inhibitor | lysis | 1 | 23318 | 25417 |
| ARB11845.1 | KY514265_p21 | hypothetical protein | phrog_6271 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 6979 | 7275 |
| ARB11894.1 | KY514265_p70 | hypothetical protein | phrog_27924 | unknown function | unknown function | 1 | 38757 | 39281 |
| ARB11904.1 | KY514265_p80 | hypothetical protein | phrog_27468 | unknown function | unknown function | 1 | 46302 | 47090 |
| ARB11895.1 | KY514265_p71 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 39281 | 40270 |
| ARB11879.1 | KY514265_p55 | membrane protein | phrog_6854 | holin | lysis | 1 | 29481 | 29801 |
| ARB11906.1 | KY514265_p82 | virion associated RNA polymerase | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 47293 | 58374 |
| ARB11838.1 | KY514265_p14 | hypothetical protein | phrog_23352 | unknown function | unknown function | 1 | 4782 | 5051 |
| ARB11833.1 | KY514265_p9 | hypothetical protein | phrog_33131 | unknown function | unknown function | 1 | 2957 | 3250 |
| ARB11855.1 | KY514265_p31 | hypothetical protein | phrog_26890 | unknown function | unknown function | 1 | 11754 | 12341 |
| ARB11836.1 | KY514265_p12 | hypothetical protein | phrog_2072 | unknown function | unknown function | 1 | 4120 | 4491 |
| ARB11892.1 | KY514265_p68 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 37789 | 38556 |
| ARB11886.1 | KY514265_p62 | endopeptidase | phrog_312 | Rz-like spanin | lysis | -1 | 32652 | 33149 |
| ARB11837.1 | KY514265_p13 | hypothetical protein | phrog_30060 | unknown function | unknown function | 1 | 4476 | 4778 |
| ARB11858.1 | KY514265_p34 | hypothetical protein | phrog_23299 | unknown function | unknown function | 1 | 13087 | 13302 |
| ARB11897.1 | KY514265_p73 | hypothetical protein | phrog_18865 | unknown function | unknown function | 1 | 42451 | 43002 |
| ARB11825.1 | KY514265_p1 | hypothetical protein | phrog_16196 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 45 | 443 |
| ARB11896.1 | KY514265_p72 | hypothetical protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 40281 | 42443 |
| ARB11911.1 | KY514265_p87 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 63603 | 64184 |
| ARB11853.1 | KY514265_p29 | hypothetical protein | phrog_24879 | unknown function | unknown function | 1 | 11067 | 11312 |
| ARB11914.1 | KY514265_p90 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 66638 | 66964 |
| ARB11848.1 | KY514265_p24 | RNAP1-like protein | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 8032 | 9015 |
| ARB11865.1 | KY514265_p41 | hypothetical protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16571 | 17740 |
| ARB11839.1 | KY514265_p15 | hypothetical protein | phrog_27528 | unknown function | unknown function | 1 | 5048 | 5341 |
| ARB11909.1 | KY514265_p85 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 59965 | 62739 |
| ARB11871.1 | KY514265_p47 | rIIA-like protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 20392 | 20898 |
| ARB11917.1 | KY514265_p93 | hypothetical protein | singleton | unknown function | unknown function | -1 | 70311 | 70397 |
| ARB11827.1 | KY514265_p3 | hypothetical protein | phrog_23646 | unknown function | unknown function | 1 | 1341 | 1841 |
| ARB11869.1 | KY514265_p45 | hypothetical protein | phrog_22904 | unknown function | unknown function | 1 | 19761 | 20129 |
| ARB11898.1 | KY514265_p74 | hypothetical protein | phrog_21467 | unknown function | unknown function | 1 | 43102 | 43314 |
| ARB11880.1 | KY514265_p56 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 29839 | 30351 |
| ARB11840.1 | KY514265_p16 | hypothetical protein | phrog_24685 | unknown function | unknown function | 1 | 5341 | 5664 |
| ARB11856.1 | KY514265_p32 | hypothetical protein | phrog_18415 | unknown function | unknown function | 1 | 12322 | 12516 |
| ARB11841.1 | KY514265_p17 | hypothetical protein | phrog_35909 | unknown function | unknown function | 1 | 5661 | 5951 |
| ARB11881.1 | KY514265_p57 | DNA methylase | phrog_56 | DNA methyltransferase | other | 1 | 30348 | 31154 |
| ARB11850.1 | KY514265_p26 | hypothetical protein | phrog_30282 | unknown function | unknown function | 1 | 10309 | 10500 |
| ARB11870.1 | KY514265_p46 | hypothetical protein | phrog_7471 | unknown function | unknown function | 1 | 20129 | 20320 |
| ARB11915.1 | KY514265_p91 | hypothetical protein | phrog_1216 | portal protein | head and packaging | -1 | 67032 | 69269 |
| ARB11864.1 | KY514265_p40 | hypothetical protein | phrog_27802 | unknown function | unknown function | 1 | 16069 | 16620 |
| ARB11862.1 | KY514265_p38 | hypothetical protein | phrog_1297 | ATPase | other | 1 | 14297 | 15367 |
| ARB11910.1 | KY514265_p86 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | -1 | 62803 | 63591 |
| ARB11834.1 | KY514265_p10 | hypothetical protein | phrog_25598 | unknown function | unknown function | 1 | 3228 | 3470 |
| ARB11842.1 | KY514265_p18 | hypothetical protein | phrog_27457 | unknown function | unknown function | 1 | 5930 | 6250 |
| ARB11926.1 | KY514265_p102 | hypothetical protein | phrog_16196 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 75567 | 75965 |
| ARB11830.1 | KY514265_p6 | hypothetical protein | phrog_37173 | unknown function | unknown function | 1 | 2355 | 2501 |
| ARB11847.1 | KY514265_p23 | hypothetical protein | phrog_35035 | unknown function | unknown function | 1 | 7609 | 8022 |
| ARB11882.1 | KY514265_p58 | hypothetical protein | phrog_27500 | unknown function | unknown function | 1 | 31161 | 31346 |
| ARB11844.1 | KY514265_p20 | hypothetical protein | phrog_24678 | unknown function | unknown function | 1 | 6619 | 6900 |
| ARB11885.1 | KY514265_p61 | tail protein | phrog_4069 | Hoc-like head decoration | head and packaging | -1 | 32114 | 32569 |
| ARB11902.1 | KY514265_p78 | host nuclease inhibitor protein | phrog_15896 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 45405 | 45740 |
| ARB11907.1 | KY514265_p83 | hypothetical protein | phrog_24558 | virion structural protein | head and packaging | -1 | 58377 | 59543 |
| ARB11924.1 | KY514265_p100 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 74682 | 74942 |
| ARB11832.1 | KY514265_p8 | hypothetical protein | phrog_23171 | unknown function | unknown function | 1 | 2718 | 2960 |
| ARB11905.1 | KY514265_p81 | membrane protein | phrog_22030 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 47100 | 47279 |
| ARB11912.1 | KY514265_p88 | major virion protein | phrog_1357 | major head protein | head and packaging | -1 | 64273 | 65445 |
| ARB11831.1 | KY514265_p7 | membrane protein | phrog_23895 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 2502 | 2672 |
| ARB11857.1 | KY514265_p33 | hypothetical protein | phrog_27839 | unknown function | unknown function | 1 | 12513 | 12821 |
| ARB11901.1 | KY514265_p77 | hypothetical protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 44577 | 45341 |
| ARB11867.1 | KY514265_p43 | DNA helicase | singleton | unknown function | unknown function | 1 | 19034 | 19240 |
| ARB11923.1 | KY514265_p99 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 73940 | 74626 |
| ARB11868.1 | KY514265_p44 | hypothetical protein | phrog_4881 | unknown function | unknown function | 1 | 19240 | 19764 |
| ARB11874.1 | KY514265_p50 | hypothetical protein | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 25499 | 28210 |
| ARB11854.1 | KY514265_p30 | hypothetical protein | phrog_22755 | unknown function | unknown function | 1 | 11558 | 11767 |
| ARB11861.1 | KY514265_p37 | lipoprotein | phrog_26640 | lipoprotein | other | 1 | 13821 | 14207 |
| ARB11908.1 | KY514265_p84 | hypothetical protein | phrog_22703 | unknown function | unknown function | -1 | 59543 | 59956 |
| ARB11859.1 | KY514265_p35 | hypothetical protein | phrog_24795 | unknown function | unknown function | 1 | 13364 | 13465 |
| ARB11876.1 | KY514265_p52 | hypothetical protein | phrog_23045 | unknown function | unknown function | 1 | 28425 | 28616 |
| ARB11843.1 | KY514265_p19 | hypothetical protein | phrog_22111 | unknown function | unknown function | 1 | 6250 | 6546 |
| ARB11875.1 | KY514265_p51 | lipoprotein | phrog_23263 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 28211 | 28396 |
| ARB11866.1 | KY514265_p42 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 17758 | 19053 |
| ARB11918.1 | KY514265_p94 | hypothetical protein | phrog_6022 | unknown function | unknown function | 1 | 70396 | 70641 |
| ARB11860.1 | KY514265_p36 | HNH endonuclease | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 13462 | 13824 |
| ARB11903.1 | KY514265_p79 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 45733 | 46296 |
| ARB11887.1 | KY514265_p63 | hypothetical protein | phrog_1356 | holin | lysis | -1 | 33124 | 33360 |
| ARB11835.1 | KY514265_p11 | hypothetical protein | phrog_30404 | unknown function | unknown function | 1 | 3470 | 4123 |
| ARB11916.1 | KY514265_p92 | nucleoside triphosphate pyrophosphohydrolase | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 69337 | 69885 |
| ARB11920.1 | KY514265_p96 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | -1 | 71254 | 72159 |
| ARB11921.1 | KY514265_p97 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 72168 | 73781 |
| ARB11925.1 | KY514265_p101 | hypothetical protein | phrog_25107 | unknown function | unknown function | -1 | 74963 | 75268 |
| ARB11899.1 | KY514265_p75 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 43314 | 44051 |
| ARB11888.1 | KY514265_p64 | lysozyme | phrog_90 | endolysin | lysis | -1 | 33357 | 33833 |
| ARB11900.1 | KY514265_p76 | HNH homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44038 | 44559 |
| ARB11893.1 | KY514265_p69 | hypothetical protein | phrog_24298 | unknown function | unknown function | 1 | 38564 | 38731 |
| ARB11852.1 | KY514265_p28 | hypothetical protein | phrog_24414 | unknown function | unknown function | 1 | 10870 | 11064 |
| ARB11889.1 | KY514265_p65 | hypothetical protein | singleton | unknown function | unknown function | -1 | 33877 | 33975 |
| ARB11826.1 | KY514265_p2 | hypothetical protein | phrog_12748 | unknown function | unknown function | 1 | 1011 | 1292 |