| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY549659 |
Definition |
Pectobacterium phage vB_PatP_CB4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
NUCCORE |
Length |
76621 |
Host Name |
Pectobacterium atrosepticum |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
100 |
%GC |
48.64 |
Number of singletons |
1 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AQT27907.1 | KY549659_p65 | tail fibers protein | singleton | unknown function | unknown function | -1 | 35611 | 36873 |
| AQT27904.1 | KY549659_p62 | holin | phrog_1356 | holin | lysis | -1 | 32910 | 33146 |
| AQT27926.1 | KY549659_p84 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 60220 | 62994 |
| AQT27929.1 | KY549659_p87 | hypothetical protein | phrog_1357 | major head protein | head and packaging | -1 | 64528 | 65700 |
| AQT27942.1 | KY549659_p100 | membrane protein | phrog_16196 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 76114 | 76362 |
| AQT27924.1 | KY549659_p82 | hypothetical protein | phrog_24558 | virion structural protein | head and packaging | -1 | 58632 | 59798 |
| AQT27882.1 | KY549659_p40 | hypothetical protein | phrog_27802 | unknown function | unknown function | 1 | 15980 | 16567 |
| AQT27911.1 | KY549659_p69 | hypothetical protein | phrog_27924 | unknown function | unknown function | 1 | 39012 | 39536 |
| AQT27913.1 | KY549659_p71 | hypothetical protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 40536 | 42698 |
| AQT27864.1 | KY549659_p22 | hypothetical protein | phrog_9585 | unknown function | unknown function | 1 | 7268 | 7546 |
| AQT27866.1 | KY549659_p24 | RNAP1-like protein | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 7979 | 8962 |
| AQT27917.1 | KY549659_p75 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44293 | 44814 |
| AQT27906.1 | KY549659_p64 | hypothetical protein | phrog_26143 | virion structural protein | head and packaging | -1 | 33816 | 35627 |
| AQT27888.1 | KY549659_p46 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 20178 | 20684 |
| AQT27885.1 | KY549659_p43 | hypothetical protein | phrog_4881 | unknown function | unknown function | 1 | 19060 | 19584 |
| AQT27909.1 | KY549659_p67 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 38194 | 38814 |
| AQT27916.1 | KY549659_p74 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 43569 | 44306 |
| AQT27930.1 | KY549659_p88 | tape measure protein | phrog_2120 | tail length tape measure protein | tail | -1 | 65715 | 66896 |
| AQT27867.1 | KY549659_p25 | RNAP2-like protein | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 8973 | 10253 |
| AQT27939.1 | KY549659_p97 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 74337 | 75023 |
| AQT27928.1 | KY549659_p86 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 63858 | 64439 |
| AQT27857.1 | KY549659_p15 | hypothetical protein | phrog_27528 | unknown function | unknown function | 1 | 4995 | 5288 |
| AQT27919.1 | KY549659_p77 | hypothetical protein | phrog_15896 | Mu Gam-like end protection | DNA, RNA and nucleotide metabolism | 1 | 45660 | 45995 |
| AQT27876.1 | KY549659_p34 | hypothetical protein | phrog_23299 | unknown function | unknown function | 1 | 13034 | 13249 |
| AQT27914.1 | KY549659_p72 | hypothetical protein | phrog_18865 | unknown function | unknown function | 1 | 42706 | 43257 |
| AQT27937.1 | KY549659_p95 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 72541 | 74154 |
| AQT27903.1 | KY549659_p61 | endopeptidase | phrog_312 | Rz-like spanin | lysis | -1 | 32438 | 32935 |
| AQT27868.1 | KY549659_p26 | hypothetical protein | phrog_30282 | unknown function | unknown function | 1 | 10256 | 10447 |
| AQT27850.1 | KY549659_p8 | hypothetical protein | phrog_23171 | unknown function | unknown function | 1 | 2665 | 2907 |
| AQT27869.1 | KY549659_p27 | hypothetical protein | phrog_33723 | unknown function | unknown function | 1 | 10494 | 10769 |
| AQT27860.1 | KY549659_p18 | hypothetical protein | phrog_27457 | unknown function | unknown function | 1 | 5877 | 6197 |
| AQT27925.1 | KY549659_p83 | hypothetical protein | phrog_22703 | unknown function | unknown function | -1 | 59798 | 60211 |
| AQT27940.1 | KY549659_p98 | hypothetical protein | phrog_419 | unknown function | unknown function | 1 | 75079 | 75339 |
| AQT27853.1 | KY549659_p11 | hypothetical protein | phrog_30404 | unknown function | unknown function | 1 | 3417 | 4070 |
| AQT27854.1 | KY549659_p12 | hypothetical protein | phrog_2072 | unknown function | unknown function | 1 | 4067 | 4438 |
| AQT27848.1 | KY549659_p6 | hypothetical protein | phrog_37173 | unknown function | unknown function | 1 | 2302 | 2448 |
| AQT27931.1 | KY549659_p89 | hypothetical protein | phrog_2346 | unknown function | unknown function | -1 | 66893 | 67219 |
| AQT27935.1 | KY549659_p93 | hypothetical protein | phrog_322 | unknown function | unknown function | 1 | 71203 | 71595 |
| AQT27902.1 | KY549659_p60 | tail protein | phrog_4069 | Hoc-like head decoration | head and packaging | -1 | 31900 | 32355 |
| AQT27923.1 | KY549659_p81 | virion associated RNA polymerase | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 47548 | 58629 |
| AQT27897.1 | KY549659_p55 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 29625 | 30137 |
| AQT27891.1 | KY549659_p49 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 25354 | 27996 |
| AQT27896.1 | KY549659_p54 | membrane protein | phrog_6854 | holin | lysis | 1 | 29267 | 29587 |
| AQT27878.1 | KY549659_p36 | HNH endonuclease | phrog_1872 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 13409 | 13771 |
| AQT27936.1 | KY549659_p94 | tail protein | phrog_2125 | virion structural protein | head and packaging | -1 | 71627 | 72532 |
| AQT27933.1 | KY549659_p91 | nucleoside triphosphate pyrophosphohydrolase | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 69593 | 70162 |
| AQT27892.1 | KY549659_p50 | membrane protein | phrog_23263 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 28033 | 28182 |
| AQT27884.1 | KY549659_p42 | DNA helicase | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 17705 | 19060 |
| AQT27894.1 | KY549659_p52 | nucleotidase | phrog_415 | polynucleotide kinase | other | 1 | 28380 | 28853 |
| AQT27922.1 | KY549659_p80 | membrane protein | phrog_22030 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 47355 | 47534 |
| AQT27873.1 | KY549659_p31 | hypothetical protein | phrog_26890 | unknown function | unknown function | 1 | 11701 | 12288 |
| AQT27863.1 | KY549659_p21 | hypothetical protein | phrog_6271 | toxin | moron, auxiliary metabolic gene and host takeover | 1 | 6926 | 7222 |
| AQT27852.1 | KY549659_p10 | hypothetical protein | phrog_25598 | unknown function | unknown function | 1 | 3175 | 3417 |
| AQT27855.1 | KY549659_p13 | hypothetical protein | phrog_30060 | unknown function | unknown function | 1 | 4423 | 4725 |
| AQT27889.1 | KY549659_p47 | rIIA-like protein | phrog_2979 | RIIA lysis inhibitor | lysis | 1 | 20681 | 23107 |
| AQT27861.1 | KY549659_p19 | hypothetical protein | phrog_22111 | unknown function | unknown function | 1 | 6197 | 6493 |
| AQT27927.1 | KY549659_p85 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | -1 | 63058 | 63846 |
| AQT27887.1 | KY549659_p45 | hypothetical protein | phrog_7471 | unknown function | unknown function | 1 | 19919 | 20107 |
| AQT27859.1 | KY549659_p17 | hypothetical protein | phrog_35909 | unknown function | unknown function | 1 | 5608 | 5898 |
| AQT27932.1 | KY549659_p90 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 67287 | 69524 |
| AQT27844.1 | KY549659_p2 | hypothetical protein | phrog_12748 | unknown function | unknown function | 1 | 958 | 1239 |
| AQT27898.1 | KY549659_p56 | DNA methylase | phrog_56 | DNA methyltransferase | other | 1 | 30134 | 30940 |
| AQT27877.1 | KY549659_p35 | hypothetical protein | phrog_24795 | unknown function | unknown function | 1 | 13311 | 13412 |
| AQT27912.1 | KY549659_p70 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 39536 | 40525 |
| AQT27870.1 | KY549659_p28 | hypothetical protein | phrog_24414 | unknown function | unknown function | 1 | 10769 | 11011 |
| AQT27874.1 | KY549659_p32 | hypothetical protein | phrog_18415 | unknown function | unknown function | 1 | 12269 | 12463 |
| AQT27900.1 | KY549659_p58 | hypothetical protein | phrog_268 | unknown function | unknown function | 1 | 31129 | 31398 |
| AQT27895.1 | KY549659_p53 | hypothetical protein | phrog_24960 | unknown function | unknown function | 1 | 28861 | 29208 |
| AQT27883.1 | KY549659_p41 | hypothetical protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16518 | 17687 |
| AQT27843.1 | KY549659_p1 | membrane protein | phrog_16196 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 141 | 389 |
| AQT27856.1 | KY549659_p14 | hypothetical protein | phrog_23352 | unknown function | unknown function | 1 | 4729 | 4998 |
| AQT27901.1 | KY549659_p59 | hypothetical protein | phrog_22643 | unknown function | unknown function | 1 | 31622 | 31855 |
| AQT27871.1 | KY549659_p29 | hypothetical protein | phrog_24879 | unknown function | unknown function | 1 | 11014 | 11259 |
| AQT27886.1 | KY549659_p44 | hypothetical protein | phrog_22904 | unknown function | unknown function | 1 | 19581 | 19919 |
| AQT27938.1 | KY549659_p96 | hypothetical protein | phrog_7696 | unknown function | unknown function | -1 | 74147 | 74344 |
| AQT27862.1 | KY549659_p20 | hypothetical protein | phrog_24678 | unknown function | unknown function | 1 | 6566 | 6847 |
| AQT27920.1 | KY549659_p78 | hypothetical protein | phrog_159 | RuvC-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 45988 | 46551 |
| AQT27921.1 | KY549659_p79 | hypothetical protein | phrog_27468 | unknown function | unknown function | 1 | 46557 | 47345 |
| AQT27846.1 | KY549659_p4 | membrane protein | phrog_31083 | unknown function | unknown function | 1 | 1851 | 1958 |
| AQT27845.1 | KY549659_p3 | hypothetical protein | phrog_23646 | unknown function | unknown function | 1 | 1288 | 1788 |
| AQT27875.1 | KY549659_p33 | hypothetical protein | phrog_27839 | unknown function | unknown function | 1 | 12460 | 12768 |
| AQT27858.1 | KY549659_p16 | hypothetical protein | phrog_24685 | unknown function | unknown function | 1 | 5288 | 5611 |
| AQT27881.1 | KY549659_p39 | hypothetical protein | phrog_23180 | unknown function | unknown function | 1 | 15357 | 15965 |
| AQT27847.1 | KY549659_p5 | hypothetical protein | phrog_22540 | unknown function | unknown function | 1 | 1955 | 2305 |
| AQT27872.1 | KY549659_p30 | hypothetical protein | phrog_22755 | unknown function | unknown function | 1 | 11505 | 11714 |
| AQT27851.1 | KY549659_p9 | hypothetical protein | phrog_33131 | unknown function | unknown function | 1 | 2904 | 3197 |
| AQT27899.1 | KY549659_p57 | hypothetical protein | phrog_27500 | unknown function | unknown function | 1 | 30947 | 31132 |
| AQT27915.1 | KY549659_p73 | hypothetical protein | phrog_21467 | unknown function | unknown function | 1 | 43357 | 43569 |
| AQT27905.1 | KY549659_p63 | lysozyme | phrog_90 | endolysin | lysis | -1 | 33143 | 33619 |
| AQT27908.1 | KY549659_p66 | tail fiber protein | phrog_20500 | tail protein | tail | -1 | 36885 | 37604 |
| AQT27890.1 | KY549659_p48 | rIIB-like protein | phrog_2886 | RIIB lysis inhibitor | lysis | 1 | 23104 | 25203 |
| AQT27918.1 | KY549659_p76 | hypothetical protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 44832 | 45596 |
| AQT27934.1 | KY549659_p92 | hypothetical protein | phrog_6022 | unknown function | unknown function | 1 | 70768 | 71013 |
| AQT27879.1 | KY549659_p37 | lipoprotein | phrog_26640 | lipoprotein | other | 1 | 13768 | 14154 |
| AQT27941.1 | KY549659_p99 | hypothetical protein | phrog_25107 | unknown function | unknown function | -1 | 75360 | 75665 |
| AQT27893.1 | KY549659_p51 | hypothetical protein | phrog_23045 | unknown function | unknown function | 1 | 28211 | 28402 |
| AQT27910.1 | KY549659_p68 | hypothetical protein | phrog_24298 | unknown function | unknown function | 1 | 38819 | 38986 |
| AQT27880.1 | KY549659_p38 | hypothetical protein | phrog_1297 | ATPase | other | 1 | 14244 | 15314 |
| AQT27865.1 | KY549659_p23 | hypothetical protein | phrog_35035 | unknown function | unknown function | 1 | 7556 | 7969 |
| AQT27849.1 | KY549659_p7 | membrane protein | phrog_23895 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 2449 | 2619 |