Genomic map of Pectobacterium phage vB_PatP_CB4 (KY549659)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY549659
Definition
Pectobacterium phage vB_PatP_CB4, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
DB of origin
NUCCORE
Length
76621
Host Name
Pectobacterium atrosepticum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
100
%GC
48.64
Number of singletons
1
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AQT27907.1 KY549659_p65 tail fibers protein singleton unknown function unknown function -1 35611 36873
AQT27904.1 KY549659_p62 holin phrog_1356 holin lysis -1 32910 33146
AQT27926.1 KY549659_p84 hypothetical protein phrog_2220 unknown function unknown function -1 60220 62994
AQT27929.1 KY549659_p87 hypothetical protein phrog_1357 major head protein head and packaging -1 64528 65700
AQT27942.1 KY549659_p100 membrane protein phrog_16196 membrane protein moron, auxiliary metabolic gene and host takeover 1 76114 76362
AQT27924.1 KY549659_p82 hypothetical protein phrog_24558 virion structural protein head and packaging -1 58632 59798
AQT27882.1 KY549659_p40 hypothetical protein phrog_27802 unknown function unknown function 1 15980 16567
AQT27911.1 KY549659_p69 hypothetical protein phrog_27924 unknown function unknown function 1 39012 39536
AQT27913.1 KY549659_p71 hypothetical protein phrog_2135 DNA primase DNA, RNA and nucleotide metabolism 1 40536 42698
AQT27864.1 KY549659_p22 hypothetical protein phrog_9585 unknown function unknown function 1 7268 7546
AQT27866.1 KY549659_p24 RNAP1-like protein phrog_2166 N4-like RNA polymerase DNA, RNA and nucleotide metabolism 1 7979 8962
AQT27917.1 KY549659_p75 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 44293 44814
AQT27906.1 KY549659_p64 hypothetical protein phrog_26143 virion structural protein head and packaging -1 33816 35627
AQT27888.1 KY549659_p46 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 20178 20684
AQT27885.1 KY549659_p43 hypothetical protein phrog_4881 unknown function unknown function 1 19060 19584
AQT27909.1 KY549659_p67 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 38194 38814
AQT27916.1 KY549659_p74 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 43569 44306
AQT27930.1 KY549659_p88 tape measure protein phrog_2120 tail length tape measure protein tail -1 65715 66896
AQT27867.1 KY549659_p25 RNAP2-like protein phrog_2051 RNA polymerase DNA, RNA and nucleotide metabolism 1 8973 10253
AQT27939.1 KY549659_p97 hypothetical protein phrog_2109 unknown function unknown function -1 74337 75023
AQT27928.1 KY549659_p86 hypothetical protein phrog_2130 unknown function unknown function -1 63858 64439
AQT27857.1 KY549659_p15 hypothetical protein phrog_27528 unknown function unknown function 1 4995 5288
AQT27919.1 KY549659_p77 hypothetical protein phrog_15896 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 45660 45995
AQT27876.1 KY549659_p34 hypothetical protein phrog_23299 unknown function unknown function 1 13034 13249
AQT27914.1 KY549659_p72 hypothetical protein phrog_18865 unknown function unknown function 1 42706 43257
AQT27937.1 KY549659_p95 terminase large subunit phrog_38 terminase large subunit head and packaging -1 72541 74154
AQT27903.1 KY549659_p61 endopeptidase phrog_312 Rz-like spanin lysis -1 32438 32935
AQT27868.1 KY549659_p26 hypothetical protein phrog_30282 unknown function unknown function 1 10256 10447
AQT27850.1 KY549659_p8 hypothetical protein phrog_23171 unknown function unknown function 1 2665 2907
AQT27869.1 KY549659_p27 hypothetical protein phrog_33723 unknown function unknown function 1 10494 10769
AQT27860.1 KY549659_p18 hypothetical protein phrog_27457 unknown function unknown function 1 5877 6197
AQT27925.1 KY549659_p83 hypothetical protein phrog_22703 unknown function unknown function -1 59798 60211
AQT27940.1 KY549659_p98 hypothetical protein phrog_419 unknown function unknown function 1 75079 75339
AQT27853.1 KY549659_p11 hypothetical protein phrog_30404 unknown function unknown function 1 3417 4070
AQT27854.1 KY549659_p12 hypothetical protein phrog_2072 unknown function unknown function 1 4067 4438
AQT27848.1 KY549659_p6 hypothetical protein phrog_37173 unknown function unknown function 1 2302 2448
AQT27931.1 KY549659_p89 hypothetical protein phrog_2346 unknown function unknown function -1 66893 67219
AQT27935.1 KY549659_p93 hypothetical protein phrog_322 unknown function unknown function 1 71203 71595
AQT27902.1 KY549659_p60 tail protein phrog_4069 Hoc-like head decoration head and packaging -1 31900 32355
AQT27923.1 KY549659_p81 virion associated RNA polymerase phrog_2206 virion RNA polymerase DNA, RNA and nucleotide metabolism -1 47548 58629
AQT27897.1 KY549659_p55 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 29625 30137
AQT27891.1 KY549659_p49 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 25354 27996
AQT27896.1 KY549659_p54 membrane protein phrog_6854 holin lysis 1 29267 29587
AQT27878.1 KY549659_p36 HNH endonuclease phrog_1872 endonuclease DNA, RNA and nucleotide metabolism 1 13409 13771
AQT27936.1 KY549659_p94 tail protein phrog_2125 virion structural protein head and packaging -1 71627 72532
AQT27933.1 KY549659_p91 nucleoside triphosphate pyrophosphohydrolase phrog_671 nucleotide pyrophosphohydrolase other 1 69593 70162
AQT27892.1 KY549659_p50 membrane protein phrog_23263 membrane protein moron, auxiliary metabolic gene and host takeover 1 28033 28182
AQT27884.1 KY549659_p42 DNA helicase phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 17705 19060
AQT27894.1 KY549659_p52 nucleotidase phrog_415 polynucleotide kinase other 1 28380 28853
AQT27922.1 KY549659_p80 membrane protein phrog_22030 membrane protein moron, auxiliary metabolic gene and host takeover 1 47355 47534
AQT27873.1 KY549659_p31 hypothetical protein phrog_26890 unknown function unknown function 1 11701 12288
AQT27863.1 KY549659_p21 hypothetical protein phrog_6271 toxin moron, auxiliary metabolic gene and host takeover 1 6926 7222
AQT27852.1 KY549659_p10 hypothetical protein phrog_25598 unknown function unknown function 1 3175 3417
AQT27855.1 KY549659_p13 hypothetical protein phrog_30060 unknown function unknown function 1 4423 4725
AQT27889.1 KY549659_p47 rIIA-like protein phrog_2979 RIIA lysis inhibitor lysis 1 20681 23107
AQT27861.1 KY549659_p19 hypothetical protein phrog_22111 unknown function unknown function 1 6197 6493
AQT27927.1 KY549659_p85 hypothetical protein phrog_2050 virion structural protein head and packaging -1 63058 63846
AQT27887.1 KY549659_p45 hypothetical protein phrog_7471 unknown function unknown function 1 19919 20107
AQT27859.1 KY549659_p17 hypothetical protein phrog_35909 unknown function unknown function 1 5608 5898
AQT27932.1 KY549659_p90 portal protein phrog_1216 portal protein head and packaging -1 67287 69524
AQT27844.1 KY549659_p2 hypothetical protein phrog_12748 unknown function unknown function 1 958 1239
AQT27898.1 KY549659_p56 DNA methylase phrog_56 DNA methyltransferase other 1 30134 30940
AQT27877.1 KY549659_p35 hypothetical protein phrog_24795 unknown function unknown function 1 13311 13412
AQT27912.1 KY549659_p70 hypothetical protein phrog_2139 exonuclease DNA, RNA and nucleotide metabolism 1 39536 40525
AQT27870.1 KY549659_p28 hypothetical protein phrog_24414 unknown function unknown function 1 10769 11011
AQT27874.1 KY549659_p32 hypothetical protein phrog_18415 unknown function unknown function 1 12269 12463
AQT27900.1 KY549659_p58 hypothetical protein phrog_268 unknown function unknown function 1 31129 31398
AQT27895.1 KY549659_p53 hypothetical protein phrog_24960 unknown function unknown function 1 28861 29208
AQT27883.1 KY549659_p41 hypothetical protein phrog_1314 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16518 17687
AQT27843.1 KY549659_p1 membrane protein phrog_16196 membrane protein moron, auxiliary metabolic gene and host takeover 1 141 389
AQT27856.1 KY549659_p14 hypothetical protein phrog_23352 unknown function unknown function 1 4729 4998
AQT27901.1 KY549659_p59 hypothetical protein phrog_22643 unknown function unknown function 1 31622 31855
AQT27871.1 KY549659_p29 hypothetical protein phrog_24879 unknown function unknown function 1 11014 11259
AQT27886.1 KY549659_p44 hypothetical protein phrog_22904 unknown function unknown function 1 19581 19919
AQT27938.1 KY549659_p96 hypothetical protein phrog_7696 unknown function unknown function -1 74147 74344
AQT27862.1 KY549659_p20 hypothetical protein phrog_24678 unknown function unknown function 1 6566 6847
AQT27920.1 KY549659_p78 hypothetical protein phrog_159 RuvC-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 45988 46551
AQT27921.1 KY549659_p79 hypothetical protein phrog_27468 unknown function unknown function 1 46557 47345
AQT27846.1 KY549659_p4 membrane protein phrog_31083 unknown function unknown function 1 1851 1958
AQT27845.1 KY549659_p3 hypothetical protein phrog_23646 unknown function unknown function 1 1288 1788
AQT27875.1 KY549659_p33 hypothetical protein phrog_27839 unknown function unknown function 1 12460 12768
AQT27858.1 KY549659_p16 hypothetical protein phrog_24685 unknown function unknown function 1 5288 5611
AQT27881.1 KY549659_p39 hypothetical protein phrog_23180 unknown function unknown function 1 15357 15965
AQT27847.1 KY549659_p5 hypothetical protein phrog_22540 unknown function unknown function 1 1955 2305
AQT27872.1 KY549659_p30 hypothetical protein phrog_22755 unknown function unknown function 1 11505 11714
AQT27851.1 KY549659_p9 hypothetical protein phrog_33131 unknown function unknown function 1 2904 3197
AQT27899.1 KY549659_p57 hypothetical protein phrog_27500 unknown function unknown function 1 30947 31132
AQT27915.1 KY549659_p73 hypothetical protein phrog_21467 unknown function unknown function 1 43357 43569
AQT27905.1 KY549659_p63 lysozyme phrog_90 endolysin lysis -1 33143 33619
AQT27908.1 KY549659_p66 tail fiber protein phrog_20500 tail protein tail -1 36885 37604
AQT27890.1 KY549659_p48 rIIB-like protein phrog_2886 RIIB lysis inhibitor lysis 1 23104 25203
AQT27918.1 KY549659_p76 hypothetical protein phrog_743 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 44832 45596
AQT27934.1 KY549659_p92 hypothetical protein phrog_6022 unknown function unknown function 1 70768 71013
AQT27879.1 KY549659_p37 lipoprotein phrog_26640 lipoprotein other 1 13768 14154
AQT27941.1 KY549659_p99 hypothetical protein phrog_25107 unknown function unknown function -1 75360 75665
AQT27893.1 KY549659_p51 hypothetical protein phrog_23045 unknown function unknown function 1 28211 28402
AQT27910.1 KY549659_p68 hypothetical protein phrog_24298 unknown function unknown function 1 38819 38986
AQT27880.1 KY549659_p38 hypothetical protein phrog_1297 ATPase other 1 14244 15314
AQT27865.1 KY549659_p23 hypothetical protein phrog_35035 unknown function unknown function 1 7556 7969
AQT27849.1 KY549659_p7 membrane protein phrog_23895 membrane protein moron, auxiliary metabolic gene and host takeover 1 2449 2619