Genomic map of Lactococcus phage R3.4 (KY554760)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY554760
Definition
Lactococcus phage R3.4, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
NUCCORE
Length
27704
Host Name
Lactococcus lactis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
35.38
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARM65511.1 KY554760_p9 hypothetical protein phrog_1484 virion structural protein head and packaging 1 5880 6218
ARM65526.1 KY554760_p24 hypothetical protein phrog_1441 unknown function unknown function -1 16870 17040
ARM65540.1 KY554760_p38 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 22094 22594
ARM65549.1 KY554760_p47 hypothetical protein phrog_1436 unknown function unknown function 1 25961 26092
ARM65520.1 KY554760_p18 hypothetical protein phrog_1434 unknown function unknown function 1 13656 13949
ARM65538.1 KY554760_p36 ssDNA binding protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 21180 21539
ARM65516.1 KY554760_p14 TMP chaperone phrog_1421 virion structural protein head and packaging 1 8375 8887
ARM65551.1 KY554760_p49 hypothetical protein phrog_1652 unknown function unknown function 1 26568 26735
ARM65521.1 KY554760_p19 receptor binding protein phrog_1630 receptor binding tail protein tail 1 13939 14733
ARM65519.1 KY554760_p17 tail fiber protein phrog_1432 tail associated lysin tail 1 12533 13666
ARM65545.1 KY554760_p43 hypothetical protein phrog_12970 unknown function unknown function -1 24283 24453
ARM65543.1 KY554760_p41 hypothetical protein phrog_1405 unknown function unknown function -1 23144 23401
ARM65507.1 KY554760_p5 capsid maturation peptidase phrog_80 head maturation protease head and packaging 1 3582 4118
ARM65505.1 KY554760_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2138 2422
ARM65533.1 KY554760_p31 methylase phrog_1071 DNA methyltransferase other -1 18818 19480
ARM65506.1 KY554760_p4 portal protein phrog_12 portal protein head and packaging 1 2435 3601
ARM65535.1 KY554760_p33 hypothetical protein phrog_35539 unknown function unknown function -1 20221 20358
ARM65515.1 KY554760_p13 hypothetical protein phrog_1420 virion structural protein head and packaging 1 8080 8355
ARM65529.1 KY554760_p27 hypothetical protein phrog_3365 unknown function unknown function -1 17524 17769
ARM65510.1 KY554760_p8 hypothetical protein phrog_1429 virion structural protein head and packaging 1 5576 5890
ARM65547.1 KY554760_p45 hypothetical protein phrog_1656 unknown function unknown function -1 25509 25697
ARM65512.1 KY554760_p10 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6209 6574
ARM65542.1 KY554760_p40 hypothetical protein phrog_1632 unknown function unknown function -1 22801 23091
ARM65546.1 KY554760_p44 hypothetical protein phrog_5487 unknown function unknown function -1 24559 24723
ARM65536.1 KY554760_p34 hypothetical protein phrog_1317 unknown function unknown function -1 20443 20955
ARM65525.1 KY554760_p23 hypothetical protein phrog_1415 unknown function unknown function -1 16523 16870
ARM65508.1 KY554760_p6 minor structural protein phrog_1393 minor head protein head and packaging 1 4111 5292
ARM65522.1 KY554760_p20 holin phrog_1379 unknown function unknown function 1 14755 15108
ARM65509.1 KY554760_p7 hypothetical protein phrog_1428 head-tail connector protein connector 1 5313 5576
ARM65514.1 KY554760_p12 neck passage structure protein singleton unknown function unknown function 1 7578 8078
ARM65524.1 KY554760_p22 hypothetical protein phrog_1430 unknown function unknown function -1 16084 16350
ARM65531.1 KY554760_p29 hypothetical protein phrog_6037 unknown function unknown function -1 18111 18308
ARM65530.1 KY554760_p28 hypothetical protein phrog_20985 unknown function unknown function -1 17766 18032
ARM65550.1 KY554760_p48 holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 26089 26571
ARM65518.1 KY554760_p16 distal tail protein phrog_1424 tail protein tail 1 11637 12533
ARM65517.1 KY554760_p15 tape measure protein phrog_58 tail length tape measure protein tail 1 8887 11637
ARM65532.1 KY554760_p30 hypothetical protein phrog_1225 unknown function unknown function -1 18385 18693
ARM65534.1 KY554760_p32 hypothetical protein phrog_1919 unknown function unknown function -1 19818 20132
ARM65541.1 KY554760_p39 hypothetical protein phrog_1449 unknown function unknown function -1 22581 22847
ARM65548.1 KY554760_p46 hypothetical protein phrog_1952 unknown function unknown function 1 25828 25956
ARM65539.1 KY554760_p37 topoisomerase phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 21543 22109
ARM65513.1 KY554760_p11 major capsid protein phrog_1433 major tail protein tail 1 6587 7492
ARM65523.1 KY554760_p21 endolysin phrog_670 endolysin lysis 1 15105 15809
ARM65537.1 KY554760_p35 hypothetical protein phrog_1295 unknown function unknown function -1 20952 21167
ARM65527.1 KY554760_p25 hypothetical protein phrog_1820 unknown function unknown function -1 17037 17213
ARM65504.1 KY554760_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 526 2148
ARM65528.1 KY554760_p26 hypothetical protein phrog_1509 unknown function unknown function -1 17206 17460
ARM65544.1 KY554760_p42 DNA polymerase phrog_1284 unknown function unknown function -1 23394 24290
ARM65503.1 KY554760_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 1 525