Genomic map of Lactococcus phage R3.4 (KY554760)

functional categories (each PHROG annotation is associated to a category)             Notes   
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG

More about this genome

Lactococcus phage R3.4, complete genome.
Molecule type
Genome structure
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus.
DB of origin
Host Name
Lactococcus lactis
Host domain
Is prophage?
Number of proteins
Number of singletons
Number of paralogs

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARM65511.1 KY554760_p9 hypothetical protein phrog_1484 virion structural protein head and packaging 1 5880 6218
ARM65526.1 KY554760_p24 hypothetical protein phrog_1441 unknown function unknown function -1 16870 17040
ARM65540.1 KY554760_p38 HNH endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism -1 22094 22594
ARM65549.1 KY554760_p47 hypothetical protein phrog_1436 unknown function unknown function 1 25961 26092
ARM65520.1 KY554760_p18 hypothetical protein phrog_1434 unknown function unknown function 1 13656 13949
ARM65538.1 KY554760_p36 ssDNA binding protein phrog_1278 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 21180 21539
ARM65516.1 KY554760_p14 TMP chaperone phrog_1421 virion structural protein head and packaging 1 8375 8887
ARM65551.1 KY554760_p49 hypothetical protein phrog_1652 unknown function unknown function 1 26568 26735
ARM65521.1 KY554760_p19 receptor binding protein phrog_1630 receptor binding tail protein tail 1 13939 14733
ARM65519.1 KY554760_p17 tail fiber protein phrog_1432 tail associated lysin tail 1 12533 13666
ARM65545.1 KY554760_p43 hypothetical protein phrog_12970 unknown function unknown function -1 24283 24453
ARM65543.1 KY554760_p41 hypothetical protein phrog_1405 unknown function unknown function -1 23144 23401
ARM65507.1 KY554760_p5 capsid maturation peptidase phrog_80 head maturation protease head and packaging 1 3582 4118
ARM65505.1 KY554760_p3 HNH endonuclease phrog_119 HNH endonuclease DNA, RNA and nucleotide metabolism 1 2138 2422
ARM65533.1 KY554760_p31 methylase phrog_1071 DNA methyltransferase other -1 18818 19480
ARM65506.1 KY554760_p4 portal protein phrog_12 portal protein head and packaging 1 2435 3601
ARM65535.1 KY554760_p33 hypothetical protein phrog_35539 unknown function unknown function -1 20221 20358
ARM65515.1 KY554760_p13 hypothetical protein phrog_1420 virion structural protein head and packaging 1 8080 8355
ARM65529.1 KY554760_p27 hypothetical protein phrog_3365 unknown function unknown function -1 17524 17769
ARM65510.1 KY554760_p8 hypothetical protein phrog_1429 virion structural protein head and packaging 1 5576 5890
ARM65547.1 KY554760_p45 hypothetical protein phrog_1656 unknown function unknown function -1 25509 25697
ARM65512.1 KY554760_p10 hypothetical protein phrog_1440 virion structural protein head and packaging 1 6209 6574
ARM65542.1 KY554760_p40 hypothetical protein phrog_1632 unknown function unknown function -1 22801 23091
ARM65546.1 KY554760_p44 hypothetical protein phrog_5487 unknown function unknown function -1 24559 24723
ARM65536.1 KY554760_p34 hypothetical protein phrog_1317 unknown function unknown function -1 20443 20955
ARM65525.1 KY554760_p23 hypothetical protein phrog_1415 unknown function unknown function -1 16523 16870
ARM65508.1 KY554760_p6 minor structural protein phrog_1393 minor head protein head and packaging 1 4111 5292
ARM65522.1 KY554760_p20 holin phrog_1379 unknown function unknown function 1 14755 15108
ARM65509.1 KY554760_p7 hypothetical protein phrog_1428 head-tail connector protein connector 1 5313 5576
ARM65514.1 KY554760_p12 neck passage structure protein singleton unknown function unknown function 1 7578 8078
ARM65524.1 KY554760_p22 hypothetical protein phrog_1430 unknown function unknown function -1 16084 16350
ARM65531.1 KY554760_p29 hypothetical protein phrog_6037 unknown function unknown function -1 18111 18308
ARM65530.1 KY554760_p28 hypothetical protein phrog_20985 unknown function unknown function -1 17766 18032
ARM65550.1 KY554760_p48 holliday junction endonuclease phrog_827 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 26089 26571
ARM65518.1 KY554760_p16 distal tail protein phrog_1424 tail protein tail 1 11637 12533
ARM65517.1 KY554760_p15 tape measure protein phrog_58 tail length tape measure protein tail 1 8887 11637
ARM65532.1 KY554760_p30 hypothetical protein phrog_1225 unknown function unknown function -1 18385 18693
ARM65534.1 KY554760_p32 hypothetical protein phrog_1919 unknown function unknown function -1 19818 20132
ARM65541.1 KY554760_p39 hypothetical protein phrog_1449 unknown function unknown function -1 22581 22847
ARM65548.1 KY554760_p46 hypothetical protein phrog_1952 unknown function unknown function 1 25828 25956
ARM65539.1 KY554760_p37 topoisomerase phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 21543 22109
ARM65513.1 KY554760_p11 major capsid protein phrog_1433 major tail protein tail 1 6587 7492
ARM65523.1 KY554760_p21 endolysin phrog_670 endolysin lysis 1 15105 15809
ARM65537.1 KY554760_p35 hypothetical protein phrog_1295 unknown function unknown function -1 20952 21167
ARM65527.1 KY554760_p25 hypothetical protein phrog_1820 unknown function unknown function -1 17037 17213
ARM65504.1 KY554760_p2 terminase large subunit phrog_9 terminase large subunit head and packaging 1 526 2148
ARM65528.1 KY554760_p26 hypothetical protein phrog_1509 unknown function unknown function -1 17206 17460
ARM65544.1 KY554760_p42 DNA polymerase phrog_1284 unknown function unknown function -1 23394 24290
ARM65503.1 KY554760_p1 terminase small subunit phrog_1437 terminase small subunit head and packaging 1 1 525