| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY554760 |
Definition |
Lactococcus phage R3.4, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Skunavirus; unclassified Skunavirus. |
DB of origin |
NUCCORE |
Length |
27704 |
Host Name |
Lactococcus lactis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
35.38 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARM65511.1 | KY554760_p9 | hypothetical protein | phrog_1484 | virion structural protein | head and packaging | 1 | 5880 | 6218 |
| ARM65526.1 | KY554760_p24 | hypothetical protein | phrog_1441 | unknown function | unknown function | -1 | 16870 | 17040 |
| ARM65540.1 | KY554760_p38 | HNH endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 22094 | 22594 |
| ARM65549.1 | KY554760_p47 | hypothetical protein | phrog_1436 | unknown function | unknown function | 1 | 25961 | 26092 |
| ARM65520.1 | KY554760_p18 | hypothetical protein | phrog_1434 | unknown function | unknown function | 1 | 13656 | 13949 |
| ARM65538.1 | KY554760_p36 | ssDNA binding protein | phrog_1278 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 21180 | 21539 |
| ARM65516.1 | KY554760_p14 | TMP chaperone | phrog_1421 | virion structural protein | head and packaging | 1 | 8375 | 8887 |
| ARM65551.1 | KY554760_p49 | hypothetical protein | phrog_1652 | unknown function | unknown function | 1 | 26568 | 26735 |
| ARM65521.1 | KY554760_p19 | receptor binding protein | phrog_1630 | receptor binding tail protein | tail | 1 | 13939 | 14733 |
| ARM65519.1 | KY554760_p17 | tail fiber protein | phrog_1432 | tail associated lysin | tail | 1 | 12533 | 13666 |
| ARM65545.1 | KY554760_p43 | hypothetical protein | phrog_12970 | unknown function | unknown function | -1 | 24283 | 24453 |
| ARM65543.1 | KY554760_p41 | hypothetical protein | phrog_1405 | unknown function | unknown function | -1 | 23144 | 23401 |
| ARM65507.1 | KY554760_p5 | capsid maturation peptidase | phrog_80 | head maturation protease | head and packaging | 1 | 3582 | 4118 |
| ARM65505.1 | KY554760_p3 | HNH endonuclease | phrog_119 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2138 | 2422 |
| ARM65533.1 | KY554760_p31 | methylase | phrog_1071 | DNA methyltransferase | other | -1 | 18818 | 19480 |
| ARM65506.1 | KY554760_p4 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 2435 | 3601 |
| ARM65535.1 | KY554760_p33 | hypothetical protein | phrog_35539 | unknown function | unknown function | -1 | 20221 | 20358 |
| ARM65515.1 | KY554760_p13 | hypothetical protein | phrog_1420 | virion structural protein | head and packaging | 1 | 8080 | 8355 |
| ARM65529.1 | KY554760_p27 | hypothetical protein | phrog_3365 | unknown function | unknown function | -1 | 17524 | 17769 |
| ARM65510.1 | KY554760_p8 | hypothetical protein | phrog_1429 | virion structural protein | head and packaging | 1 | 5576 | 5890 |
| ARM65547.1 | KY554760_p45 | hypothetical protein | phrog_1656 | unknown function | unknown function | -1 | 25509 | 25697 |
| ARM65512.1 | KY554760_p10 | hypothetical protein | phrog_1440 | virion structural protein | head and packaging | 1 | 6209 | 6574 |
| ARM65542.1 | KY554760_p40 | hypothetical protein | phrog_1632 | unknown function | unknown function | -1 | 22801 | 23091 |
| ARM65546.1 | KY554760_p44 | hypothetical protein | phrog_5487 | unknown function | unknown function | -1 | 24559 | 24723 |
| ARM65536.1 | KY554760_p34 | hypothetical protein | phrog_1317 | unknown function | unknown function | -1 | 20443 | 20955 |
| ARM65525.1 | KY554760_p23 | hypothetical protein | phrog_1415 | unknown function | unknown function | -1 | 16523 | 16870 |
| ARM65508.1 | KY554760_p6 | minor structural protein | phrog_1393 | minor head protein | head and packaging | 1 | 4111 | 5292 |
| ARM65522.1 | KY554760_p20 | holin | phrog_1379 | unknown function | unknown function | 1 | 14755 | 15108 |
| ARM65509.1 | KY554760_p7 | hypothetical protein | phrog_1428 | head-tail connector protein | connector | 1 | 5313 | 5576 |
| ARM65514.1 | KY554760_p12 | neck passage structure protein | singleton | unknown function | unknown function | 1 | 7578 | 8078 |
| ARM65524.1 | KY554760_p22 | hypothetical protein | phrog_1430 | unknown function | unknown function | -1 | 16084 | 16350 |
| ARM65531.1 | KY554760_p29 | hypothetical protein | phrog_6037 | unknown function | unknown function | -1 | 18111 | 18308 |
| ARM65530.1 | KY554760_p28 | hypothetical protein | phrog_20985 | unknown function | unknown function | -1 | 17766 | 18032 |
| ARM65550.1 | KY554760_p48 | holliday junction endonuclease | phrog_827 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 26089 | 26571 |
| ARM65518.1 | KY554760_p16 | distal tail protein | phrog_1424 | tail protein | tail | 1 | 11637 | 12533 |
| ARM65517.1 | KY554760_p15 | tape measure protein | phrog_58 | tail length tape measure protein | tail | 1 | 8887 | 11637 |
| ARM65532.1 | KY554760_p30 | hypothetical protein | phrog_1225 | unknown function | unknown function | -1 | 18385 | 18693 |
| ARM65534.1 | KY554760_p32 | hypothetical protein | phrog_1919 | unknown function | unknown function | -1 | 19818 | 20132 |
| ARM65541.1 | KY554760_p39 | hypothetical protein | phrog_1449 | unknown function | unknown function | -1 | 22581 | 22847 |
| ARM65548.1 | KY554760_p46 | hypothetical protein | phrog_1952 | unknown function | unknown function | 1 | 25828 | 25956 |
| ARM65539.1 | KY554760_p37 | topoisomerase | phrog_659 | Sak-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 21543 | 22109 |
| ARM65513.1 | KY554760_p11 | major capsid protein | phrog_1433 | major tail protein | tail | 1 | 6587 | 7492 |
| ARM65523.1 | KY554760_p21 | endolysin | phrog_670 | endolysin | lysis | 1 | 15105 | 15809 |
| ARM65537.1 | KY554760_p35 | hypothetical protein | phrog_1295 | unknown function | unknown function | -1 | 20952 | 21167 |
| ARM65527.1 | KY554760_p25 | hypothetical protein | phrog_1820 | unknown function | unknown function | -1 | 17037 | 17213 |
| ARM65504.1 | KY554760_p2 | terminase large subunit | phrog_9 | terminase large subunit | head and packaging | 1 | 526 | 2148 |
| ARM65528.1 | KY554760_p26 | hypothetical protein | phrog_1509 | unknown function | unknown function | -1 | 17206 | 17460 |
| ARM65544.1 | KY554760_p42 | DNA polymerase | phrog_1284 | unknown function | unknown function | -1 | 23394 | 24290 |
| ARM65503.1 | KY554760_p1 | terminase small subunit | phrog_1437 | terminase small subunit | head and packaging | 1 | 1 | 525 |