Genomic map of Dinoroseobacter phage vB_DshS-R5C (KY606587)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY606587
Definition
Dinoroseobacter phage vB_DshS-R5C, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nanhaivirus; Dinoroseobacter virus D5C.
DB of origin
NUCCORE
Length
77874
Host Name
Dinoroseobacter shibae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
123
%GC
61.54
Number of singletons
65
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARB06094.1 KY606587_p40 tail repeat like protein singleton unknown function unknown function 1 14834 15994
ARB06170.1 KY606587_p116 hypothetical protein singleton unknown function unknown function 1 75419 75688
ARB06127.1 KY606587_p73 hypothetical protein phrog_5888 unknown function unknown function 1 47886 48245
ARB06164.1 KY606587_p110 hypothetical protein singleton unknown function unknown function 1 73309 73512
ARB06106.1 KY606587_p52 hypothetical protein singleton unknown function unknown function 1 27528 27779
ARB06087.1 KY606587_p33 hypothetical protein singleton unknown function unknown function -1 11530 11742
ARB06082.1 KY606587_p28 hypothetical protein singleton unknown function unknown function -1 10172 10549
ARB06150.1 KY606587_p96 DNA polymerase A phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 64432 66447
ARB06105.1 KY606587_p51 coat protein phrog_283 major head protein head and packaging 1 26232 27461
ARB06138.1 KY606587_p84 7-cyano-7-deazaguanine reductase phrog_5949 GTP cyclohydrolase other 1 56764 57348
ARB06114.1 KY606587_p60 major tail structural protein phrog_290 minor tail protein tail 1 31995 33191
ARB06176.1 KY606587_p122 hypothetical protein singleton unknown function unknown function 1 77261 77605
ARB06078.1 KY606587_p24 hypothetical protein singleton unknown function unknown function -1 9154 9438
ARB06125.1 KY606587_p71 thymidylate synthase phrog_85 thymidylate synthase DNA, RNA and nucleotide metabolism 1 45234 46088
ARB06071.1 KY606587_p17 hypothetical protein singleton unknown function unknown function 1 6048 6293
ARB06177.1 KY606587_p123 hypothetical protein singleton unknown function unknown function 1 77589 77861
ARB06149.1 KY606587_p95 radical SAM protein phrog_2076 QueE-like radical SAM domain moron, auxiliary metabolic gene and host takeover 1 63598 64431
ARB06163.1 KY606587_p109 ATP-dependent DNA helicase phrog_1967 DNA helicase DNA, RNA and nucleotide metabolism 1 71669 73306
ARB06136.1 KY606587_p82 7-cyano-7-deazaguanine synthase phrog_1550 QueC-like queuosine biosynthesis moron, auxiliary metabolic gene and host takeover 1 55344 56192
ARB06102.1 KY606587_p48 hypothetical protein singleton unknown function unknown function -1 24358 24603
ARB06131.1 KY606587_p77 ATP-dependent DNA helicase phrog_1967 DNA helicase DNA, RNA and nucleotide metabolism 1 51528 53042
ARB06130.1 KY606587_p76 primase phrog_21866 primase DNA, RNA and nucleotide metabolism 1 49763 51541
ARB06110.1 KY606587_p56 minor tail protein phrog_477 head-tail adaptor Ad1 connector 1 30301 30792
ARB06065.1 KY606587_p11 hypothetical protein phrog_2421 unknown function unknown function 1 3941 4171
ARB06070.1 KY606587_p16 hypothetical protein singleton unknown function unknown function 1 5816 6055
ARB06153.1 KY606587_p99 DNA polymerase III, subunit gamma and tau phrog_5846 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 67137 68057
ARB06083.1 KY606587_p29 hypothetical protein singleton unknown function unknown function -1 10561 10827
ARB06085.1 KY606587_p31 hypothetical protein singleton unknown function unknown function -1 11196 11330
ARB06118.1 KY606587_p64 GTA-like protein phrog_2913 glycoside hydrolase other 1 37247 37792
ARB06107.1 KY606587_p53 hypothetical protein phrog_1193 hemolysin other 1 27854 28120
ARB06122.1 KY606587_p68 ribonuclease III phrog_15388 unknown function unknown function 1 43460 44173
ARB06137.1 KY606587_p83 GTP cyclohydrolase phrog_2197 GTP cyclohydrolase other 1 56192 56755
ARB06143.1 KY606587_p89 exodeoxyribonuclease-5 phrog_325 Dda-like helicase DNA, RNA and nucleotide metabolism 1 59550 60758
ARB06148.1 KY606587_p94 hypothetical protein singleton unknown function unknown function 1 63206 63598
ARB06058.1 KY606587_p4 hypothetical protein singleton unknown function unknown function 1 860 1249
ARB06129.1 KY606587_p75 hypothetical protein phrog_2402 unknown function unknown function 1 48813 49700
ARB06095.1 KY606587_p41 hypothetical protein singleton unknown function unknown function 1 16005 18041
ARB06119.1 KY606587_p65 GTA-like protein phrog_778 tail assembly protein tail 1 37789 38670
ARB06090.1 KY606587_p36 hypothetical protein singleton unknown function unknown function 1 12241 12429
ARB06166.1 KY606587_p112 hypothetical protein singleton unknown function unknown function 1 73717 73884
ARB06139.1 KY606587_p85 hypothetical protein singleton unknown function unknown function 1 57431 57628
ARB06112.1 KY606587_p58 virion structural protein phrog_169 tail completion or Neck1 protein connector 1 31159 31572
ARB06123.1 KY606587_p69 P-loop NTPase superfamily protein singleton unknown function unknown function 1 44183 44578
ARB06161.1 KY606587_p107 hypothetical protein singleton unknown function unknown function 1 71262 71393
ARB06121.1 KY606587_p67 GTA-like protein phrog_4271 tail protein tail 1 39091 43473
ARB06152.1 KY606587_p98 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 66676 67140
ARB06075.1 KY606587_p21 hypothetical protein singleton unknown function unknown function 1 7025 7234
ARB06169.1 KY606587_p115 hypothetical protein singleton unknown function unknown function 1 75099 75422
ARB06080.1 KY606587_p26 hypothetical protein singleton unknown function unknown function -1 9739 9930
ARB06146.1 KY606587_p92 DNA polymerase III subunit epsilon phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 61545 62213
ARB06158.1 KY606587_p104 hypothetical protein singleton unknown function unknown function 1 69827 70396
ARB06134.1 KY606587_p80 hypothetical protein singleton unknown function unknown function 1 54192 54353
ARB06159.1 KY606587_p105 hypothetical protein singleton unknown function unknown function 1 70383 70862
ARB06117.1 KY606587_p63 tail tape measure protein phrog_991 tail length tape measure protein tail 1 34119 37175
ARB06063.1 KY606587_p9 hypothetical protein phrog_4848 unknown function unknown function 1 2274 2735
ARB06155.1 KY606587_p101 hypothetical protein singleton unknown function unknown function 1 68496 68759
ARB06124.1 KY606587_p70 hypothetical protein singleton unknown function unknown function -1 44767 44907
ARB06067.1 KY606587_p13 hypothetical protein singleton unknown function unknown function 1 4443 4676
ARB06128.1 KY606587_p74 heat shock protein phrog_2378 unknown function unknown function 1 48242 48787
ARB06059.1 KY606587_p5 hypothetical protein singleton unknown function unknown function 1 1251 1424
ARB06154.1 KY606587_p100 deoxycytidylate deaminase phrog_174 dCMP deaminase DNA, RNA and nucleotide metabolism 1 68057 68503
ARB06091.1 KY606587_p37 hypothetical protein phrog_145 portal protein head and packaging 1 12550 14073
ARB06062.1 KY606587_p8 hypothetical protein singleton unknown function unknown function 1 1937 2281
ARB06167.1 KY606587_p113 hypothetical protein phrog_1965 unknown function unknown function 1 73896 74534
ARB06068.1 KY606587_p14 hypothetical protein singleton unknown function unknown function 1 4687 4800
ARB06092.1 KY606587_p38 hypothetical protein phrog_1627 unknown function unknown function 1 14073 14393
ARB06099.1 KY606587_p45 acetylmuramidase phrog_315 endolysin lysis 1 22472 23278
ARB06097.1 KY606587_p43 ribonucleotide reductase phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 19180 21111
ARB06073.1 KY606587_p19 hypothetical protein singleton unknown function unknown function 1 6529 6678
ARB06172.1 KY606587_p118 hypothetical protein singleton unknown function unknown function 1 75884 76198
ARB06175.1 KY606587_p121 hypothetical protein singleton unknown function unknown function 1 76886 77215
ARB06100.1 KY606587_p46 hypothetical protein singleton unknown function unknown function 1 23278 23511
ARB06140.1 KY606587_p86 queuosine tRNA-ribosyltransferase phrog_887 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover 1 57631 58923
ARB06103.1 KY606587_p49 hypothetical protein singleton unknown function unknown function -1 24652 25164
ARB06066.1 KY606587_p12 hypothetical protein singleton unknown function unknown function 1 4173 4358
ARB06076.1 KY606587_p22 hypothetical protein singleton unknown function unknown function 1 7227 7544
ARB06115.1 KY606587_p61 pre-tape measure chaperone protein phrog_313 Tail assembly chaperone tail 1 33339 33740
ARB06089.1 KY606587_p35 hypothetical protein singleton unknown function unknown function -1 12031 12213
ARB06113.1 KY606587_p59 structural protein phrog_179 tail terminator connector 1 31569 31976
ARB06147.1 KY606587_p93 hypothetical protein phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism 1 62217 63191
ARB06126.1 KY606587_p72 superfamily II DNA/RNA helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 46081 47850
ARB06086.1 KY606587_p32 hypothetical protein singleton unknown function unknown function -1 11330 11530
ARB06069.1 KY606587_p15 hypothetical protein singleton unknown function unknown function 1 5380 5823
ARB06156.1 KY606587_p102 hypothetical protein singleton unknown function unknown function 1 68853 69134
ARB06096.1 KY606587_p42 hypothetical protein singleton unknown function unknown function -1 18085 18948
ARB06056.1 KY606587_p2 hypothetical protein singleton unknown function unknown function 1 292 618
ARB06072.1 KY606587_p18 hypothetical protein singleton unknown function unknown function 1 6296 6532
ARB06074.1 KY606587_p20 hypothetical protein phrog_22316 unknown function unknown function 1 6766 6915
ARB06108.1 KY606587_p54 hypothetical protein singleton unknown function unknown function 1 28113 28559
ARB06088.1 KY606587_p34 hypothetical protein singleton unknown function unknown function -1 11742 11957
ARB06101.1 KY606587_p47 phosphate starvation-inducible protein phrog_170 PhoH-like phosphate starvation-inducible other 1 23615 24361
ARB06064.1 KY606587_p10 hypothetical protein singleton unknown function unknown function 1 2748 3944
ARB06077.1 KY606587_p23 large packaging protein phrog_2 terminase large subunit head and packaging 1 7631 9136
ARB06093.1 KY606587_p39 hypothetical protein phrog_30556 unknown function unknown function 1 14399 14821
ARB06104.1 KY606587_p50 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 25387 26154
ARB06141.1 KY606587_p87 hypothetical protein singleton unknown function unknown function 1 58923 59234
ARB06162.1 KY606587_p108 hypothetical protein singleton unknown function unknown function 1 71380 71610
ARB06160.1 KY606587_p106 hypothetical protein singleton unknown function unknown function 1 70862 71260
ARB06055.1 KY606587_p1 hypothetical protein singleton unknown function unknown function 1 5 301
ARB06084.1 KY606587_p30 hypothetical protein singleton unknown function unknown function -1 10888 11166
ARB06057.1 KY606587_p3 hypothetical protein singleton unknown function unknown function 1 615 863
ARB06168.1 KY606587_p114 exonuclease phrog_255 exonuclease DNA, RNA and nucleotide metabolism 1 74531 75106
ARB06111.1 KY606587_p57 hypothetical protein phrog_161 head closure Hc1 connector 1 30789 31166
ARB06142.1 KY606587_p88 N-acetyltransferase singleton unknown function unknown function 1 59215 59550
ARB06116.1 KY606587_p62 hypothetical protein phrog_3817 tail chaperonin tail 1 33761 34111
ARB06171.1 KY606587_p117 hypothetical protein singleton unknown function unknown function 1 75681 75887
ARB06165.1 KY606587_p111 hypothetical protein singleton unknown function unknown function 1 73505 73720
ARB06098.1 KY606587_p44 head morphogenesis protein phrog_241 head morphogenesis head and packaging 1 21356 22462
ARB06174.1 KY606587_p120 hypothetical protein phrog_2165 DNA helicase DNA, RNA and nucleotide metabolism 1 76443 76886
ARB06151.1 KY606587_p97 hypothetical protein singleton unknown function unknown function 1 66444 66701
ARB06135.1 KY606587_p81 hypothetical protein singleton unknown function unknown function 1 54412 55209
ARB06120.1 KY606587_p66 GTA-like protein phrog_329 minor tail protein tail 1 38667 39086
ARB06061.1 KY606587_p7 hypothetical protein singleton unknown function unknown function 1 1546 1956
ARB06144.1 KY606587_p90 hypothetical protein phrog_3322 endonuclease DNA, RNA and nucleotide metabolism 1 60784 61122
ARB06079.1 KY606587_p25 hypothetical protein singleton unknown function unknown function -1 9419 9655
ARB06081.1 KY606587_p27 hypothetical protein singleton unknown function unknown function -1 9933 10175
ARB06060.1 KY606587_p6 hypothetical protein phrog_36711 unknown function unknown function 1 1421 1549
ARB06132.1 KY606587_p78 phosphoglycolate phosphatase phrog_420 unknown function unknown function 1 53039 53641
ARB06145.1 KY606587_p91 hypothetical protein phrog_4826 unknown function unknown function 1 61115 61552
ARB06133.1 KY606587_p79 6-pyruvoyl tetrahydrobiopterin synthase phrog_2389 QueD-like 6-pyruvoyl-tetrahydropterin synthase moron, auxiliary metabolic gene and host takeover 1 53638 54081
ARB06109.1 KY606587_p55 DNA transfer protein phrog_1745 DNA transfer protein other 1 28559 30208
ARB06157.1 KY606587_p103 transcription elongation protein phrog_6361 unknown function unknown function 1 69158 69745
ARB06173.1 KY606587_p119 hypothetical protein phrog_31704 unknown function unknown function 1 76198 76446