| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY606587 |
Definition |
Dinoroseobacter phage vB_DshS-R5C, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Nanhaivirus; Dinoroseobacter virus D5C. |
DB of origin |
NUCCORE |
Length |
77874 |
Host Name |
Dinoroseobacter shibae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
123 |
%GC |
61.54 |
Number of singletons |
65 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARB06094.1 | KY606587_p40 | tail repeat like protein | singleton | unknown function | unknown function | 1 | 14834 | 15994 |
| ARB06170.1 | KY606587_p116 | hypothetical protein | singleton | unknown function | unknown function | 1 | 75419 | 75688 |
| ARB06127.1 | KY606587_p73 | hypothetical protein | phrog_5888 | unknown function | unknown function | 1 | 47886 | 48245 |
| ARB06164.1 | KY606587_p110 | hypothetical protein | singleton | unknown function | unknown function | 1 | 73309 | 73512 |
| ARB06106.1 | KY606587_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27528 | 27779 |
| ARB06087.1 | KY606587_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11530 | 11742 |
| ARB06082.1 | KY606587_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 10172 | 10549 |
| ARB06150.1 | KY606587_p96 | DNA polymerase A | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 64432 | 66447 |
| ARB06105.1 | KY606587_p51 | coat protein | phrog_283 | major head protein | head and packaging | 1 | 26232 | 27461 |
| ARB06138.1 | KY606587_p84 | 7-cyano-7-deazaguanine reductase | phrog_5949 | GTP cyclohydrolase | other | 1 | 56764 | 57348 |
| ARB06114.1 | KY606587_p60 | major tail structural protein | phrog_290 | minor tail protein | tail | 1 | 31995 | 33191 |
| ARB06176.1 | KY606587_p122 | hypothetical protein | singleton | unknown function | unknown function | 1 | 77261 | 77605 |
| ARB06078.1 | KY606587_p24 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9154 | 9438 |
| ARB06125.1 | KY606587_p71 | thymidylate synthase | phrog_85 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 45234 | 46088 |
| ARB06071.1 | KY606587_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6048 | 6293 |
| ARB06177.1 | KY606587_p123 | hypothetical protein | singleton | unknown function | unknown function | 1 | 77589 | 77861 |
| ARB06149.1 | KY606587_p95 | radical SAM protein | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | 1 | 63598 | 64431 |
| ARB06163.1 | KY606587_p109 | ATP-dependent DNA helicase | phrog_1967 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 71669 | 73306 |
| ARB06136.1 | KY606587_p82 | 7-cyano-7-deazaguanine synthase | phrog_1550 | QueC-like queuosine biosynthesis | moron, auxiliary metabolic gene and host takeover | 1 | 55344 | 56192 |
| ARB06102.1 | KY606587_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 24358 | 24603 |
| ARB06131.1 | KY606587_p77 | ATP-dependent DNA helicase | phrog_1967 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 51528 | 53042 |
| ARB06130.1 | KY606587_p76 | primase | phrog_21866 | primase | DNA, RNA and nucleotide metabolism | 1 | 49763 | 51541 |
| ARB06110.1 | KY606587_p56 | minor tail protein | phrog_477 | head-tail adaptor Ad1 | connector | 1 | 30301 | 30792 |
| ARB06065.1 | KY606587_p11 | hypothetical protein | phrog_2421 | unknown function | unknown function | 1 | 3941 | 4171 |
| ARB06070.1 | KY606587_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5816 | 6055 |
| ARB06153.1 | KY606587_p99 | DNA polymerase III, subunit gamma and tau | phrog_5846 | clamp loader of DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 67137 | 68057 |
| ARB06083.1 | KY606587_p29 | hypothetical protein | singleton | unknown function | unknown function | -1 | 10561 | 10827 |
| ARB06085.1 | KY606587_p31 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11196 | 11330 |
| ARB06118.1 | KY606587_p64 | GTA-like protein | phrog_2913 | glycoside hydrolase | other | 1 | 37247 | 37792 |
| ARB06107.1 | KY606587_p53 | hypothetical protein | phrog_1193 | hemolysin | other | 1 | 27854 | 28120 |
| ARB06122.1 | KY606587_p68 | ribonuclease III | phrog_15388 | unknown function | unknown function | 1 | 43460 | 44173 |
| ARB06137.1 | KY606587_p83 | GTP cyclohydrolase | phrog_2197 | GTP cyclohydrolase | other | 1 | 56192 | 56755 |
| ARB06143.1 | KY606587_p89 | exodeoxyribonuclease-5 | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 59550 | 60758 |
| ARB06148.1 | KY606587_p94 | hypothetical protein | singleton | unknown function | unknown function | 1 | 63206 | 63598 |
| ARB06058.1 | KY606587_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 860 | 1249 |
| ARB06129.1 | KY606587_p75 | hypothetical protein | phrog_2402 | unknown function | unknown function | 1 | 48813 | 49700 |
| ARB06095.1 | KY606587_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16005 | 18041 |
| ARB06119.1 | KY606587_p65 | GTA-like protein | phrog_778 | tail assembly protein | tail | 1 | 37789 | 38670 |
| ARB06090.1 | KY606587_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12241 | 12429 |
| ARB06166.1 | KY606587_p112 | hypothetical protein | singleton | unknown function | unknown function | 1 | 73717 | 73884 |
| ARB06139.1 | KY606587_p85 | hypothetical protein | singleton | unknown function | unknown function | 1 | 57431 | 57628 |
| ARB06112.1 | KY606587_p58 | virion structural protein | phrog_169 | tail completion or Neck1 protein | connector | 1 | 31159 | 31572 |
| ARB06123.1 | KY606587_p69 | P-loop NTPase superfamily protein | singleton | unknown function | unknown function | 1 | 44183 | 44578 |
| ARB06161.1 | KY606587_p107 | hypothetical protein | singleton | unknown function | unknown function | 1 | 71262 | 71393 |
| ARB06121.1 | KY606587_p67 | GTA-like protein | phrog_4271 | tail protein | tail | 1 | 39091 | 43473 |
| ARB06152.1 | KY606587_p98 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 66676 | 67140 |
| ARB06075.1 | KY606587_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7025 | 7234 |
| ARB06169.1 | KY606587_p115 | hypothetical protein | singleton | unknown function | unknown function | 1 | 75099 | 75422 |
| ARB06080.1 | KY606587_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9739 | 9930 |
| ARB06146.1 | KY606587_p92 | DNA polymerase III subunit epsilon | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 61545 | 62213 |
| ARB06158.1 | KY606587_p104 | hypothetical protein | singleton | unknown function | unknown function | 1 | 69827 | 70396 |
| ARB06134.1 | KY606587_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54192 | 54353 |
| ARB06159.1 | KY606587_p105 | hypothetical protein | singleton | unknown function | unknown function | 1 | 70383 | 70862 |
| ARB06117.1 | KY606587_p63 | tail tape measure protein | phrog_991 | tail length tape measure protein | tail | 1 | 34119 | 37175 |
| ARB06063.1 | KY606587_p9 | hypothetical protein | phrog_4848 | unknown function | unknown function | 1 | 2274 | 2735 |
| ARB06155.1 | KY606587_p101 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68496 | 68759 |
| ARB06124.1 | KY606587_p70 | hypothetical protein | singleton | unknown function | unknown function | -1 | 44767 | 44907 |
| ARB06067.1 | KY606587_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4443 | 4676 |
| ARB06128.1 | KY606587_p74 | heat shock protein | phrog_2378 | unknown function | unknown function | 1 | 48242 | 48787 |
| ARB06059.1 | KY606587_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1251 | 1424 |
| ARB06154.1 | KY606587_p100 | deoxycytidylate deaminase | phrog_174 | dCMP deaminase | DNA, RNA and nucleotide metabolism | 1 | 68057 | 68503 |
| ARB06091.1 | KY606587_p37 | hypothetical protein | phrog_145 | portal protein | head and packaging | 1 | 12550 | 14073 |
| ARB06062.1 | KY606587_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1937 | 2281 |
| ARB06167.1 | KY606587_p113 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 73896 | 74534 |
| ARB06068.1 | KY606587_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4687 | 4800 |
| ARB06092.1 | KY606587_p38 | hypothetical protein | phrog_1627 | unknown function | unknown function | 1 | 14073 | 14393 |
| ARB06099.1 | KY606587_p45 | acetylmuramidase | phrog_315 | endolysin | lysis | 1 | 22472 | 23278 |
| ARB06097.1 | KY606587_p43 | ribonucleotide reductase | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | 1 | 19180 | 21111 |
| ARB06073.1 | KY606587_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6529 | 6678 |
| ARB06172.1 | KY606587_p118 | hypothetical protein | singleton | unknown function | unknown function | 1 | 75884 | 76198 |
| ARB06175.1 | KY606587_p121 | hypothetical protein | singleton | unknown function | unknown function | 1 | 76886 | 77215 |
| ARB06100.1 | KY606587_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23278 | 23511 |
| ARB06140.1 | KY606587_p86 | queuosine tRNA-ribosyltransferase | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 57631 | 58923 |
| ARB06103.1 | KY606587_p49 | hypothetical protein | singleton | unknown function | unknown function | -1 | 24652 | 25164 |
| ARB06066.1 | KY606587_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4173 | 4358 |
| ARB06076.1 | KY606587_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7227 | 7544 |
| ARB06115.1 | KY606587_p61 | pre-tape measure chaperone protein | phrog_313 | Tail assembly chaperone | tail | 1 | 33339 | 33740 |
| ARB06089.1 | KY606587_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12031 | 12213 |
| ARB06113.1 | KY606587_p59 | structural protein | phrog_179 | tail terminator | connector | 1 | 31569 | 31976 |
| ARB06147.1 | KY606587_p93 | hypothetical protein | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | 1 | 62217 | 63191 |
| ARB06126.1 | KY606587_p72 | superfamily II DNA/RNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 46081 | 47850 |
| ARB06086.1 | KY606587_p32 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11330 | 11530 |
| ARB06069.1 | KY606587_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5380 | 5823 |
| ARB06156.1 | KY606587_p102 | hypothetical protein | singleton | unknown function | unknown function | 1 | 68853 | 69134 |
| ARB06096.1 | KY606587_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18085 | 18948 |
| ARB06056.1 | KY606587_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 292 | 618 |
| ARB06072.1 | KY606587_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6296 | 6532 |
| ARB06074.1 | KY606587_p20 | hypothetical protein | phrog_22316 | unknown function | unknown function | 1 | 6766 | 6915 |
| ARB06108.1 | KY606587_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 28113 | 28559 |
| ARB06088.1 | KY606587_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11742 | 11957 |
| ARB06101.1 | KY606587_p47 | phosphate starvation-inducible protein | phrog_170 | PhoH-like phosphate starvation-inducible | other | 1 | 23615 | 24361 |
| ARB06064.1 | KY606587_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2748 | 3944 |
| ARB06077.1 | KY606587_p23 | large packaging protein | phrog_2 | terminase large subunit | head and packaging | 1 | 7631 | 9136 |
| ARB06093.1 | KY606587_p39 | hypothetical protein | phrog_30556 | unknown function | unknown function | 1 | 14399 | 14821 |
| ARB06104.1 | KY606587_p50 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 25387 | 26154 |
| ARB06141.1 | KY606587_p87 | hypothetical protein | singleton | unknown function | unknown function | 1 | 58923 | 59234 |
| ARB06162.1 | KY606587_p108 | hypothetical protein | singleton | unknown function | unknown function | 1 | 71380 | 71610 |
| ARB06160.1 | KY606587_p106 | hypothetical protein | singleton | unknown function | unknown function | 1 | 70862 | 71260 |
| ARB06055.1 | KY606587_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5 | 301 |
| ARB06084.1 | KY606587_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 10888 | 11166 |
| ARB06057.1 | KY606587_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 615 | 863 |
| ARB06168.1 | KY606587_p114 | exonuclease | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 74531 | 75106 |
| ARB06111.1 | KY606587_p57 | hypothetical protein | phrog_161 | head closure Hc1 | connector | 1 | 30789 | 31166 |
| ARB06142.1 | KY606587_p88 | N-acetyltransferase | singleton | unknown function | unknown function | 1 | 59215 | 59550 |
| ARB06116.1 | KY606587_p62 | hypothetical protein | phrog_3817 | tail chaperonin | tail | 1 | 33761 | 34111 |
| ARB06171.1 | KY606587_p117 | hypothetical protein | singleton | unknown function | unknown function | 1 | 75681 | 75887 |
| ARB06165.1 | KY606587_p111 | hypothetical protein | singleton | unknown function | unknown function | 1 | 73505 | 73720 |
| ARB06098.1 | KY606587_p44 | head morphogenesis protein | phrog_241 | head morphogenesis | head and packaging | 1 | 21356 | 22462 |
| ARB06174.1 | KY606587_p120 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 76443 | 76886 |
| ARB06151.1 | KY606587_p97 | hypothetical protein | singleton | unknown function | unknown function | 1 | 66444 | 66701 |
| ARB06135.1 | KY606587_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 54412 | 55209 |
| ARB06120.1 | KY606587_p66 | GTA-like protein | phrog_329 | minor tail protein | tail | 1 | 38667 | 39086 |
| ARB06061.1 | KY606587_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1546 | 1956 |
| ARB06144.1 | KY606587_p90 | hypothetical protein | phrog_3322 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 60784 | 61122 |
| ARB06079.1 | KY606587_p25 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9419 | 9655 |
| ARB06081.1 | KY606587_p27 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9933 | 10175 |
| ARB06060.1 | KY606587_p6 | hypothetical protein | phrog_36711 | unknown function | unknown function | 1 | 1421 | 1549 |
| ARB06132.1 | KY606587_p78 | phosphoglycolate phosphatase | phrog_420 | unknown function | unknown function | 1 | 53039 | 53641 |
| ARB06145.1 | KY606587_p91 | hypothetical protein | phrog_4826 | unknown function | unknown function | 1 | 61115 | 61552 |
| ARB06133.1 | KY606587_p79 | 6-pyruvoyl tetrahydrobiopterin synthase | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | 1 | 53638 | 54081 |
| ARB06109.1 | KY606587_p55 | DNA transfer protein | phrog_1745 | DNA transfer protein | other | 1 | 28559 | 30208 |
| ARB06157.1 | KY606587_p103 | transcription elongation protein | phrog_6361 | unknown function | unknown function | 1 | 69158 | 69745 |
| ARB06173.1 | KY606587_p119 | hypothetical protein | phrog_31704 | unknown function | unknown function | 1 | 76198 | 76446 |