| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY612839 |
Definition |
Vibrio phage pVco-5, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
NUCCORE |
Length |
74325 |
Host Name |
Vibrio |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
126 |
%GC |
38.71 |
Number of singletons |
71 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARM71093.1 | KY612839_p105 | hypothetical protein | singleton | unknown function | unknown function | -1 | 46911 | 47051 |
| ARM71047.1 | KY612839_p59 | DNA-directed RNA polymerase RNAP1 | phrog_2166 | N4-like RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13225 | 14178 |
| ARM71023.1 | KY612839_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7815 | 7958 |
| ARM71094.1 | KY612839_p106 | crossover junction endodeoxyribonuclease | phrog_1682 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47059 | 47379 |
| ARM71074.1 | KY612839_p86 | hypothetical protein | phrog_10818 | unknown function | unknown function | -1 | 27602 | 32329 |
| ARM71075.1 | KY612839_p87 | hypothetical protein | phrog_16335 | ATPase | other | 1 | 32521 | 32913 |
| ARM71087.1 | KY612839_p99 | hypothetical protein | phrog_671 | nucleotide pyrophosphohydrolase | other | 1 | 41433 | 41900 |
| ARM71017.1 | KY612839_p29 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6610 | 6735 |
| ARM71018.1 | KY612839_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6860 | 7060 |
| ARM71028.1 | KY612839_p40 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8944 | 9135 |
| ARM71063.1 | KY612839_p75 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21725 | 21850 |
| ARM71089.1 | KY612839_p101 | hypothetical protein | phrog_2135 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 42928 | 45093 |
| ARM71037.1 | KY612839_p49 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10774 | 10980 |
| ARM71001.1 | KY612839_p13 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3401 | 3538 |
| ARM71002.1 | KY612839_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3525 | 3680 |
| ARM71046.1 | KY612839_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12994 | 13215 |
| ARM71033.1 | KY612839_p45 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9965 | 10168 |
| ARM71021.1 | KY612839_p33 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7455 | 7658 |
| ARM70999.1 | KY612839_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3057 | 3251 |
| ARM71071.1 | KY612839_p83 | hypothetical protein | phrog_24595 | virion structural protein | head and packaging | -1 | 26137 | 27111 |
| ARM71105.1 | KY612839_p117 | hypothetical protein | phrog_2130 | unknown function | unknown function | -1 | 62638 | 63234 |
| ARM71049.1 | KY612839_p61 | DNA-directed RNA polymerase RNAP2 | phrog_20599 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 14806 | 15255 |
| ARM71008.1 | KY612839_p20 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4305 | 4469 |
| ARM71101.1 | KY612839_p113 | hypothetical protein | phrog_17660 | unknown function | unknown function | -1 | 58025 | 59161 |
| ARM71040.1 | KY612839_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11427 | 11615 |
| ARM71073.1 | KY612839_p85 | hypothetical protein | phrog_34933 | unknown function | unknown function | -1 | 27301 | 27609 |
| ARM71014.1 | KY612839_p26 | hypothetical protein | singleton | unknown function | unknown function | 1 | 5912 | 6130 |
| ARM71022.1 | KY612839_p34 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7624 | 7818 |
| ARM71114.1 | KY612839_p126 | hypothetical protein | singleton | unknown function | unknown function | -1 | 74160 | 74291 |
| ARM71062.1 | KY612839_p74 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21556 | 21756 |
| ARM71011.1 | KY612839_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4707 | 4862 |
| ARM71111.1 | KY612839_p123 | hypothetical protein | singleton | unknown function | unknown function | -1 | 68629 | 71901 |
| ARM71102.1 | KY612839_p114 | hypothetical protein | phrog_2646 | unknown function | unknown function | -1 | 59163 | 59579 |
| ARM71039.1 | KY612839_p51 | hypothetical protein | singleton | unknown function | unknown function | 1 | 11191 | 11403 |
| ARM70993.1 | KY612839_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1835 | 1990 |
| ARM71056.1 | KY612839_p68 | hypothetical protein | phrog_18330 | unknown function | unknown function | 1 | 19040 | 19468 |
| ARM71107.1 | KY612839_p119 | hypothetical protein | phrog_2120 | tail length tape measure protein | tail | -1 | 64633 | 65760 |
| ARM71081.1 | KY612839_p93 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36204 | 36392 |
| ARM71092.1 | KY612839_p104 | hypothetical protein | phrog_743 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 46189 | 46947 |
| ARM71003.1 | KY612839_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3688 | 3816 |
| ARM71024.1 | KY612839_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8071 | 8277 |
| ARM71005.1 | KY612839_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3930 | 4088 |
| ARM71078.1 | KY612839_p90 | hypothetical protein | phrog_1314 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 34578 | 35804 |
| ARM71042.1 | KY612839_p54 | hypothetical protein | phrog_25853 | unknown function | unknown function | 1 | 11806 | 11997 |
| ARM71077.1 | KY612839_p89 | hypothetical protein | phrog_1297 | ATPase | other | 1 | 33791 | 34525 |
| ARM71009.1 | KY612839_p21 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4456 | 4590 |
| ARM71103.1 | KY612839_p115 | hypothetical protein | phrog_2220 | unknown function | unknown function | -1 | 59587 | 61761 |
| ARM71057.1 | KY612839_p69 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19478 | 19891 |
| ARM71043.1 | KY612839_p55 | hypothetical protein | phrog_18082 | unknown function | unknown function | 1 | 12120 | 12359 |
| ARM71088.1 | KY612839_p100 | hypothetical protein | phrog_2139 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 41910 | 42917 |
| ARM71015.1 | KY612839_p27 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6127 | 6372 |
| ARM71097.1 | KY612839_p109 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48079 | 48228 |
| ARM70998.1 | KY612839_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2885 | 3097 |
| ARM71041.1 | KY612839_p53 | hypothetical protein | phrog_25853 | unknown function | unknown function | 1 | 11615 | 11815 |
| ARM71080.1 | KY612839_p92 | hypothetical protein | singleton | unknown function | unknown function | 1 | 36034 | 36207 |
| ARM71029.1 | KY612839_p41 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9113 | 9292 |
| ARM71012.1 | KY612839_p24 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4982 | 5134 |
| ARM71054.1 | KY612839_p66 | hypothetical protein | phrog_17135 | unknown function | unknown function | 1 | 18134 | 18409 |
| ARM71035.1 | KY612839_p47 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10415 | 10630 |
| ARM71098.1 | KY612839_p110 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48271 | 48477 |
| ARM71051.1 | KY612839_p63 | DNA-directed RNA polymerase RNAP2 | phrog_2051 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 16114 | 16902 |
| ARM71007.1 | KY612839_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4181 | 4339 |
| ARM71020.1 | KY612839_p32 | hypothetical protein | phrog_21645 | unknown function | unknown function | 1 | 7243 | 7458 |
| ARM71068.1 | KY612839_p80 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24516 | 24656 |
| ARM71013.1 | KY612839_p25 | hypothetical protein | phrog_22423 | unknown function | unknown function | 1 | 5302 | 5523 |
| ARM71026.1 | KY612839_p38 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8499 | 8795 |
| ARM71065.1 | KY612839_p77 | hypothetical protein | phrog_18142 | unknown function | unknown function | 1 | 22684 | 23160 |
| ARM70995.1 | KY612839_p7 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2262 | 2453 |
| ARM71090.1 | KY612839_p102 | hypothetical protein | phrog_14094 | unknown function | unknown function | 1 | 45097 | 45381 |
| ARM71086.1 | KY612839_p98 | hypothetical protein | phrog_1965 | unknown function | unknown function | 1 | 40804 | 41430 |
| ARM71091.1 | KY612839_p103 | AAA domain protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 45385 | 46119 |
| ARM70997.1 | KY612839_p9 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2721 | 2888 |
| ARM71109.1 | KY612839_p121 | portal protein | phrog_1216 | portal protein | head and packaging | -1 | 66120 | 68237 |
| ARM71104.1 | KY612839_p116 | hypothetical protein | phrog_2050 | virion structural protein | head and packaging | -1 | 61820 | 62632 |
| ARM71016.1 | KY612839_p28 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6491 | 6610 |
| ARM71052.1 | KY612839_p64 | hypothetical protein | singleton | unknown function | unknown function | 1 | 16950 | 17780 |
| ARM71019.1 | KY612839_p31 | hypothetical protein | phrog_21645 | unknown function | unknown function | 1 | 7044 | 7256 |
| ARM71059.1 | KY612839_p71 | hypothetical protein | phrog_26869 | unknown function | unknown function | 1 | 20254 | 20430 |
| ARM71067.1 | KY612839_p79 | hypothetical protein | phrog_18469 | unknown function | unknown function | 1 | 23755 | 24234 |
| ARM71058.1 | KY612839_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 19872 | 20177 |
| ARM71100.1 | KY612839_p112 | virion-encapsulated RNA polymerase | phrog_2206 | virion RNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 48734 | 58021 |
| ARM71085.1 | KY612839_p97 | hypothetical protein | singleton | unknown function | unknown function | 1 | 40615 | 40728 |
| ARM71069.1 | KY612839_p81 | hypothetical protein | singleton | unknown function | unknown function | 1 | 24670 | 25482 |
| ARM71061.1 | KY612839_p73 | hypothetical protein | phrog_9685 | unknown function | unknown function | 1 | 21359 | 21559 |
| ARM71083.1 | KY612839_p95 | hypothetical protein | phrog_16775 | unknown function | unknown function | 1 | 37540 | 37986 |
| ARM71044.1 | KY612839_p56 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12409 | 12675 |
| ARM71106.1 | KY612839_p118 | major capsid protein | phrog_1357 | major head protein | head and packaging | -1 | 63297 | 64613 |
| ARM71031.1 | KY612839_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9568 | 9759 |
| ARM71110.1 | KY612839_p122 | hypothetical protein | phrog_18138 | unknown function | unknown function | 1 | 68307 | 68597 |
| ARM71096.1 | KY612839_p108 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47979 | 48095 |
| ARM71076.1 | KY612839_p88 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 33051 | 33617 |
| ARM70990.1 | KY612839_p2 | hypothetical protein | phrog_25798 | unknown function | unknown function | 1 | 737 | 925 |
| ARM71072.1 | KY612839_p84 | hypothetical protein | singleton | unknown function | unknown function | -1 | 27122 | 27259 |
| ARM70996.1 | KY612839_p8 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2437 | 2634 |
| ARM70989.1 | KY612839_p1 | hypothetical protein | phrog_2109 | unknown function | unknown function | -1 | 10 | 696 |
| ARM71038.1 | KY612839_p50 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10977 | 11180 |
| ARM71070.1 | KY612839_p82 | hypothetical protein | phrog_6596 | unknown function | unknown function | 1 | 25529 | 25990 |
| ARM71064.1 | KY612839_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22311 | 22637 |
| ARM71084.1 | KY612839_p96 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 38115 | 40622 |
| ARM71032.1 | KY612839_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9750 | 9968 |
| ARM70992.1 | KY612839_p4 | hypothetical protein | phrog_3600 | antimicrobial peptide resistance and lipid A acylation protein PagP | moron, auxiliary metabolic gene and host takeover | 1 | 1203 | 1838 |
| ARM71079.1 | KY612839_p91 | hypothetical protein | singleton | unknown function | unknown function | 1 | 35806 | 35988 |
| ARM71108.1 | KY612839_p120 | hypothetical protein | singleton | unknown function | unknown function | -1 | 65764 | 66114 |
| ARM71112.1 | KY612839_p124 | hypothetical protein | phrog_2125 | virion structural protein | head and packaging | -1 | 71898 | 72587 |
| ARM71034.1 | KY612839_p46 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10146 | 10418 |
| ARM70994.1 | KY612839_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2089 | 2265 |
| ARM71060.1 | KY612839_p72 | hypothetical protein | phrog_9325 | unknown function | unknown function | 1 | 20547 | 21155 |
| ARM71050.1 | KY612839_p62 | hypothetical protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 15397 | 15945 |
| ARM71055.1 | KY612839_p67 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | -1 | 18468 | 18989 |
| ARM71095.1 | KY612839_p107 | hypothetical protein | singleton | unknown function | unknown function | 1 | 47379 | 47870 |
| ARM71036.1 | KY612839_p48 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10707 | 10823 |
| ARM71006.1 | KY612839_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4051 | 4203 |
| ARM71053.1 | KY612839_p65 | hypothetical protein | phrog_25910 | unknown function | unknown function | 1 | 17916 | 18158 |
| ARM71030.1 | KY612839_p42 | hypothetical protein | singleton | unknown function | unknown function | 1 | 9283 | 9450 |
| ARM71045.1 | KY612839_p57 | hypothetical protein | phrog_17814 | unknown function | unknown function | 1 | 12685 | 12945 |
| ARM71082.1 | KY612839_p94 | hypothetical protein | phrog_325 | Dda-like helicase | DNA, RNA and nucleotide metabolism | 1 | 36385 | 37539 |
| ARM71066.1 | KY612839_p78 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23551 | 23691 |
| ARM71113.1 | KY612839_p125 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 72581 | 74170 |
| ARM71027.1 | KY612839_p39 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8785 | 8898 |
| ARM71025.1 | KY612839_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8326 | 8502 |
| ARM70991.1 | KY612839_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 995 | 1189 |
| ARM71048.1 | KY612839_p60 | hypothetical protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 14160 | 14783 |
| ARM71099.1 | KY612839_p111 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48487 | 48705 |
| ARM71010.1 | KY612839_p22 | hypothetical protein | singleton | unknown function | unknown function | 1 | 4577 | 4720 |
| ARM71004.1 | KY612839_p16 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3791 | 3943 |
| ARM71000.1 | KY612839_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3238 | 3435 |