| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY620117 |
Definition |
Salmonella phage BSPM4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Chivirus; unclassified Chivirus. |
DB of origin |
NUCCORE |
Length |
59097 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
78 |
%GC |
56.54 |
Number of singletons |
3 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AQY55187.1 | KY620117_p11 | terminase small subunit | phrog_141 | terminase small subunit | head and packaging | 1 | 10386 | 10955 |
| AQY55222.1 | KY620117_p46 | hypothetical protein | phrog_8264 | unknown function | unknown function | -1 | 43194 | 43646 |
| AQY55209.1 | KY620117_p33 | hypothetical protein | phrog_2448 | unknown function | unknown function | 1 | 34526 | 35488 |
| AQY55203.1 | KY620117_p27 | assembly protein 2 | phrog_778 | tail assembly protein | tail | 1 | 27579 | 28397 |
| AQY55204.1 | KY620117_p28 | assembly protein 1 | phrog_1180 | tail assembly chaperone | tail | 1 | 28409 | 28639 |
| AQY55225.1 | KY620117_p49 | hypothetical protein | phrog_9072 | thymidylate synthase complementing protein | DNA, RNA and nucleotide metabolism | -1 | 44313 | 44825 |
| AQY55191.1 | KY620117_p15 | prohead protease ClpP | phrog_53 | head maturation protease | head and packaging | 1 | 15003 | 16274 |
| AQY55208.1 | KY620117_p32 | hypothetical protein | phrog_2448 | unknown function | unknown function | 1 | 33508 | 34515 |
| AQY55183.1 | KY620117_p7 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 5886 | 6482 |
| AQY55177.1 | KY620117_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 478 | 594 |
| AQY55201.1 | KY620117_p25 | hypothetical protein | phrog_2335 | tail length tape measure protein | tail | 1 | 21649 | 25875 |
| AQY55178.1 | KY620117_p2 | primase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 591 | 3173 |
| AQY55252.1 | KY620117_p76 | hypothetical protein | phrog_8059 | unknown function | unknown function | 1 | 57852 | 58058 |
| AQY55245.1 | KY620117_p69 | hypothetical protein | phrog_10759 | unknown function | unknown function | 1 | 54578 | 55060 |
| AQY55182.1 | KY620117_p6 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 4494 | 5831 |
| AQY55249.1 | KY620117_p73 | hypothetical protein | phrog_10087 | unknown function | unknown function | 1 | 56178 | 57347 |
| AQY55244.1 | KY620117_p68 | hypothetical protein | phrog_2385 | unknown function | unknown function | 1 | 54375 | 54575 |
| AQY55227.1 | KY620117_p51 | hypothetical protein | phrog_8705 | unknown function | unknown function | -1 | 45051 | 45272 |
| AQY55246.1 | KY620117_p70 | hypothetical protein | phrog_7744 | unknown function | unknown function | 1 | 55072 | 55275 |
| AQY55207.1 | KY620117_p31 | tail fiber protein | phrog_7049 | tail fiber protein | tail | 1 | 32758 | 33498 |
| AQY55197.1 | KY620117_p21 | hypothetical protein | phrog_5078 | tail terminator | connector | 1 | 19131 | 19634 |
| AQY55228.1 | KY620117_p52 | hypothetical protein | phrog_9067 | unknown function | unknown function | -1 | 45269 | 45463 |
| AQY55239.1 | KY620117_p63 | hypothetical protein | phrog_7942 | unknown function | unknown function | -1 | 51716 | 52156 |
| AQY55215.1 | KY620117_p39 | hypothetical protein | phrog_15395 | tail protein | tail | -1 | 41025 | 41306 |
| AQY55224.1 | KY620117_p48 | hypothetical protein | phrog_3012 | unknown function | unknown function | -1 | 43951 | 44232 |
| AQY55219.1 | KY620117_p43 | NinC protein | singleton | unknown function | unknown function | -1 | 42140 | 42229 |
| AQY55223.1 | KY620117_p47 | hypothetical protein | phrog_9301 | unknown function | unknown function | -1 | 43643 | 43954 |
| AQY55240.1 | KY620117_p64 | hypothetical protein | phrog_6647 | unknown function | unknown function | -1 | 52228 | 52602 |
| AQY55221.1 | KY620117_p45 | hypothetical protein | phrog_1714 | unknown function | unknown function | -1 | 42929 | 43192 |
| AQY55226.1 | KY620117_p50 | hypothetical protein | phrog_9722 | unknown function | unknown function | -1 | 44807 | 45061 |
| AQY55229.1 | KY620117_p53 | hypothetical protein | phrog_8209 | unknown function | unknown function | -1 | 45474 | 46007 |
| AQY55202.1 | KY620117_p26 | hypothetical protein | phrog_1082 | tail assembly protein | tail | 1 | 25881 | 27569 |
| AQY55243.1 | KY620117_p67 | hypothetical protein | phrog_3199 | unknown function | unknown function | 1 | 53821 | 54360 |
| AQY55206.1 | KY620117_p30 | hypothetical protein | phrog_6284 | tail protein | tail | 1 | 28868 | 32758 |
| AQY55186.1 | KY620117_p10 | SNF2 domain-containing protein | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 8924 | 10399 |
| AQY55250.1 | KY620117_p74 | hypothetical protein | phrog_33660 | unknown function | unknown function | 1 | 57358 | 57573 |
| AQY55253.1 | KY620117_p77 | hypothetical protein | phrog_7646 | unknown function | unknown function | 1 | 58051 | 58302 |
| AQY55190.1 | KY620117_p14 | lambda family portal protein B | phrog_21 | portal protein | head and packaging | 1 | 13282 | 14961 |
| AQY55214.1 | KY620117_p38 | lysis protein A | phrog_873 | endolysin | head and packaging | 1 | 40306 | 41019 |
| AQY55237.1 | KY620117_p61 | hypothetical protein | phrog_7965 | unknown function | unknown function | -1 | 51066 | 51428 |
| AQY55189.1 | KY620117_p13 | head-to-tail joining protein W | phrog_75 | head-tail adaptor Ad1 | connector | 1 | 13031 | 13285 |
| AQY55235.1 | KY620117_p59 | hypothetical protein | phrog_7200 | unknown function | unknown function | -1 | 49773 | 50006 |
| AQY55196.1 | KY620117_p20 | hypothetical protein | phrog_27 | tail completion or Neck1 protein | connector | 1 | 18508 | 19134 |
| AQY55230.1 | KY620117_p54 | N-6-adenine-methyltransferase | phrog_111 | DNA methyltransferase | other | -1 | 46085 | 46789 |
| AQY55198.1 | KY620117_p22 | hypothetical protein | phrog_807 | major tail protein with Ig-like domain | tail | 1 | 19648 | 20787 |
| AQY55179.1 | KY620117_p3 | hypothetical protein | phrog_7401 | unknown function | unknown function | -1 | 3170 | 3451 |
| AQY55231.1 | KY620117_p55 | hypothetical protein | phrog_8386 | unknown function | unknown function | -1 | 46789 | 47889 |
| AQY55234.1 | KY620117_p58 | hypothetical protein | phrog_7587 | unknown function | unknown function | -1 | 49493 | 49768 |
| AQY55238.1 | KY620117_p62 | hypothetical protein | phrog_7734 | unknown function | unknown function | -1 | 51394 | 51729 |
| AQY55200.1 | KY620117_p24 | hypothetical protein | phrog_9221 | tail length tape measure protein | tail | 1 | 21390 | 21587 |
| AQY55199.1 | KY620117_p23 | hypothetical protein | phrog_5260 | tail protein | tail | 1 | 20884 | 21345 |
| AQY55220.1 | KY620117_p44 | hypothetical protein | phrog_8098 | unknown function | unknown function | -1 | 42219 | 42932 |
| AQY55218.1 | KY620117_p42 | hypothetical protein | phrog_18367 | unknown function | unknown function | -1 | 41859 | 42143 |
| AQY55184.1 | KY620117_p8 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 6549 | 8588 |
| AQY55205.1 | KY620117_p29 | hypothetical protein | phrog_1196 | tail assembly chaperone | tail | 1 | 28639 | 28878 |
| AQY55242.1 | KY620117_p66 | hypothetical protein | phrog_26477 | clamp loader of DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 53365 | 53802 |
| AQY55192.1 | KY620117_p16 | decorator protein D | phrog_49 | head decoration | head and packaging | 1 | 16289 | 16708 |
| AQY55180.1 | KY620117_p4 | hypothetical protein | phrog_7721 | unknown function | unknown function | 1 | 3691 | 4110 |
| AQY55236.1 | KY620117_p60 | recombination-associated protein RdgC | phrog_724 | exonuclease recombination-associated | DNA, RNA and nucleotide metabolism | -1 | 50009 | 51085 |
| AQY55248.1 | KY620117_p72 | hypothetical protein | phrog_8635 | unknown function | unknown function | 1 | 55831 | 56052 |
| AQY55210.1 | KY620117_p34 | hypothetical protein | phrog_2448 | unknown function | unknown function | 1 | 35502 | 36521 |
| AQY55213.1 | KY620117_p37 | lysis protein B | phrog_7686 | Rz-like spanin | lysis | 1 | 39964 | 40302 |
| AQY55254.1 | KY620117_p78 | hypothetical protein | phrog_8116 | unknown function | unknown function | 1 | 58295 | 58546 |
| AQY55216.1 | KY620117_p40 | hypothetical protein | phrog_1275 | Rz-like spanin | lysis | 1 | 41197 | 41400 |
| AQY55181.1 | KY620117_p5 | hypothetical protein | phrog_8318 | unknown function | unknown function | 1 | 4172 | 4501 |
| AQY55212.1 | KY620117_p36 | hypothetical protein | phrog_7226 | unknown function | unknown function | 1 | 37772 | 39901 |
| AQY55194.1 | KY620117_p18 | hypothetical protein | phrog_7559 | unknown function | unknown function | 1 | 17847 | 18140 |
| AQY55188.1 | KY620117_p12 | terminase large subunit | phrog_15 | terminase large subunit | head and packaging | 1 | 10945 | 13020 |
| AQY55185.1 | KY620117_p9 | VRR-NUC domain-containing protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 8590 | 8877 |
| AQY55193.1 | KY620117_p17 | major capsid protein E | phrog_29 | major head protein | head and packaging | 1 | 16721 | 17785 |
| AQY55211.1 | KY620117_p35 | hypothetical protein | phrog_10924 | unknown function | unknown function | 1 | 36536 | 37762 |
| AQY55247.1 | KY620117_p71 | hypothetical protein | phrog_9514 | unknown function | unknown function | 1 | 55286 | 55834 |
| AQY55195.1 | KY620117_p19 | hypothetical protein | phrog_4858 | unknown function | unknown function | 1 | 18143 | 18508 |
| AQY55241.1 | KY620117_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 53143 | 53247 |
| AQY55233.1 | KY620117_p57 | hypothetical protein | phrog_6886 | unknown function | unknown function | -1 | 48557 | 49297 |
| AQY55232.1 | KY620117_p56 | hypothetical protein | phrog_8641 | unknown function | unknown function | -1 | 47886 | 48560 |
| AQY55217.1 | KY620117_p41 | hypothetical protein | phrog_355 | nucleoside 2-deoxyribosyltransferase | DNA, RNA and nucleotide metabolism | -1 | 41401 | 41862 |
| AQY55251.1 | KY620117_p75 | hypothetical protein | phrog_3786 | unknown function | unknown function | 1 | 57577 | 57849 |