| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY624611 |
Definition |
Corynebacterium phage LGCM-V4, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
36674 |
Host Name |
Corynebacterium pseudotuberculosis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
51.04 |
Number of singletons |
13 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARM68649.1 | KY624611_p21 | hypothetical protein | phrog_12885 | unknown function | unknown function | 1 | 11736 | 12353 |
| ARM68670.1 | KY624611_p42 | hypothetical protein | phrog_18185 | tail fiber protein | tail | 1 | 30225 | 31601 |
| ARM68631.1 | KY624611_p3 | integrase | phrog_1 | integrase | integration and excision | -1 | 1280 | 2545 |
| ARM68661.1 | KY624611_p33 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 19651 | 20028 |
| ARM68664.1 | KY624611_p36 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21638 | 21847 |
| ARM68657.1 | KY624611_p29 | hypothetical protein | phrog_26345 | unknown function | unknown function | 1 | 18368 | 18538 |
| ARM68639.1 | KY624611_p11 | transcriptional regulator | phrog_9103 | transcriptional repressor | transcription regulation | 1 | 6114 | 6350 |
| ARM68658.1 | KY624611_p30 | hypothetical protein | phrog_442 | head-tail adaptor | connector | 1 | 18561 | 19043 |
| ARM68677.1 | KY624611_p49 | hypothetical protein | phrog_25215 | unknown function | unknown function | 1 | 34868 | 36550 |
| ARM68636.1 | KY624611_p8 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4881 | 4994 |
| ARM68638.1 | KY624611_p10 | hypothetical protein | phrog_16278 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 5505 | 5996 |
| ARM68635.1 | KY624611_p7 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4660 | 4806 |
| ARM68667.1 | KY624611_p39 | immunity-specific protein | phrog_106 | minor tail protein | tail | 1 | 27531 | 28322 |
| ARM68674.1 | KY624611_p46 | hypothetical protein | phrog_443 | holin | lysis | 1 | 33482 | 33721 |
| ARM68641.1 | KY624611_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 7078 | 7251 |
| ARM68650.1 | KY624611_p22 | hypothetical protein | phrog_338 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 12441 | 12722 |
| ARM68671.1 | KY624611_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31605 | 31781 |
| ARM68676.1 | KY624611_p48 | secreted protein | phrog_11860 | unknown function | unknown function | 1 | 34185 | 34523 |
| ARM68675.1 | KY624611_p47 | membrane protein | phrog_4026 | minor tail protein | tail | 1 | 33724 | 34188 |
| ARM68673.1 | KY624611_p45 | teichoic acid phosphorylcholine esterase/choline binding protein E | phrog_14048 | endolysin | lysis | 1 | 32745 | 33482 |
| ARM68629.1 | KY624611_p1 | hypothetical protein | phrog_31673 | unknown function | unknown function | 1 | 212 | 826 |
| ARM68668.1 | KY624611_p40 | immunity-specific protein | phrog_16996 | unknown function | unknown function | 1 | 28363 | 29145 |
| ARM68666.1 | KY624611_p38 | hypothetical protein | phrog_8927 | tail length tape measure protein | tail | 1 | 22509 | 27521 |
| ARM68659.1 | KY624611_p31 | hypothetical protein | phrog_501 | head closure Hc1 | connector | 1 | 19040 | 19402 |
| ARM68653.1 | KY624611_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14651 | 14824 |
| ARM68665.1 | KY624611_p37 | hypothetical protein | singleton | unknown function | unknown function | 1 | 21857 | 22546 |
| ARM68651.1 | KY624611_p23 | hypothetical protein | phrog_10594 | unknown function | unknown function | 1 | 12839 | 13231 |
| ARM68640.1 | KY624611_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6399 | 6659 |
| ARM68660.1 | KY624611_p32 | hypothetical protein | phrog_5837 | head closure Hc1 | connector | 1 | 19395 | 19661 |
| ARM68633.1 | KY624611_p5 | hypothetical protein | phrog_3162 | unknown function | unknown function | -1 | 3516 | 4322 |
| ARM68655.1 | KY624611_p27 | capsid and scaffold protein | phrog_9644 | head maturation protease | head and packaging | 1 | 16075 | 17121 |
| ARM68669.1 | KY624611_p41 | immunity-specific protein | phrog_20692 | unknown function | unknown function | 1 | 29146 | 30225 |
| ARM68663.1 | KY624611_p35 | hypothetical protein | phrog_5010 | tail assembly chaperone | tail | 1 | 21099 | 21476 |
| ARM68630.1 | KY624611_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1007 | 1249 |
| ARM68647.1 | KY624611_p19 | hypothetical protein | phrog_20527 | unknown function | unknown function | 1 | 9555 | 10301 |
| ARM68648.1 | KY624611_p20 | hypothetical protein | phrog_16726 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 10459 | 11505 |
| ARM68654.1 | KY624611_p26 | portal protein | phrog_12 | portal protein | head and packaging | 1 | 14837 | 16078 |
| ARM68637.1 | KY624611_p9 | hypothetical protein | phrog_87 | metallo-protease | other | -1 | 5088 | 5495 |
| ARM68672.1 | KY624611_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 32050 | 32637 |
| ARM68634.1 | KY624611_p6 | hypothetical protein | phrog_597 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 4433 | 4657 |
| ARM68662.1 | KY624611_p34 | hypothetical protein | phrog_476 | major tail protein | tail | 1 | 20057 | 21004 |
| ARM68652.1 | KY624611_p24 | hypothetical protein | phrog_9 | terminase large subunit | head and packaging | 1 | 13221 | 14615 |
| ARM68632.1 | KY624611_p4 | hypothetical protein | singleton | unknown function | unknown function | -1 | 2675 | 3514 |
| ARM68642.1 | KY624611_p14 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7362 | 7583 |
| ARM68645.1 | KY624611_p17 | hypothetical protein | phrog_27182 | unknown function | unknown function | 1 | 8903 | 9127 |
| ARM68656.1 | KY624611_p28 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 17118 | 18368 |
| ARM68643.1 | KY624611_p15 | antirepressor protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 7610 | 8431 |
| ARM68646.1 | KY624611_p18 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9388 | 9501 |
| ARM68644.1 | KY624611_p16 | hypothetical protein | phrog_22556 | unknown function | unknown function | 1 | 8646 | 8879 |