Genomic map of Salmonella phage SE40 (KY626163)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY626163
Definition
Salmonella phage SE40, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; unclassified Jerseyvirus.
DB of origin
NUCCORE
Length
28914
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
36
%GC
50.17
Number of singletons
15
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARK07383.1 KY626163_p19 tail fiber protein phrog_469 tail protein tail 1 14795 15733
ARK07368.1 KY626163_p4 neck whiskers protein singleton unknown function unknown function 1 3640 3861
ARK07391.1 KY626163_p27 13.88 kDa late protein phrog_3127 unknown function unknown function -1 21099 21599
ARK07390.1 KY626163_p26 hypothetical protein phrog_69 exonuclease DNA, RNA and nucleotide metabolism -1 20027 21055
ARK07365.1 KY626163_p1 terminase singleton unknown function unknown function 1 51 236
ARK07384.1 KY626163_p20 tail fibers protein phrog_29731 tail spike protein tail 1 15746 16630
ARK07375.1 KY626163_p11 hypothetical protein singleton unknown function unknown function 1 7533 7673
ARK07395.1 KY626163_p31 regulatory prophage protein singleton unknown function unknown function -1 22761 23429
ARK07369.1 KY626163_p5 hypothetical protein phrog_206 head scaffolding protein head and packaging 1 4302 5003
ARK07396.1 KY626163_p32 regulatory prophage protein singleton unknown function unknown function -1 23426 23995
ARK07372.1 KY626163_p8 capsid and scaffold protein singleton unknown function unknown function 1 5893 6069
ARK07393.1 KY626163_p29 regulatory prophage protein singleton unknown function unknown function -1 21967 22125
ARK07366.1 KY626163_p2 62kDa structural protein phrog_145 portal protein head and packaging 1 249 1718
ARK07394.1 KY626163_p30 hypothetical protein singleton unknown function unknown function 1 22148 22780
ARK07370.1 KY626163_p6 capsid protein singleton unknown function unknown function 1 5007 5306
ARK07377.1 KY626163_p13 DNA-binding protein phrog_63 anti-repressor Ant transcription regulation -1 9245 9880
ARK07389.1 KY626163_p25 hypothetical protein singleton unknown function unknown function -1 19858 20037
ARK07400.1 KY626163_p36 hypothetical protein phrog_2180 unknown function unknown function 1 27901 28086
ARK07379.1 KY626163_p15 hypothetical protein phrog_704 DNA repair exonuclease DNA, RNA and nucleotide metabolism -1 10011 10814
ARK07382.1 KY626163_p18 tail fiber protein phrog_31307 tail protein tail 1 13896 14726
ARK07386.1 KY626163_p22 DNA helicase singleton unknown function unknown function -1 17140 18201
ARK07371.1 KY626163_p7 capsid protein phrog_15288 major head protein head and packaging 1 5335 5832
ARK07398.1 KY626163_p34 hypothetical protein phrog_1040 peptidase HslV family other 1 25987 26778
ARK07373.1 KY626163_p9 hypothetical protein phrog_4451 unknown function unknown function 1 6162 6350
ARK07381.1 KY626163_p17 hypothetical protein singleton unknown function unknown function 1 13780 13905
ARK07397.1 KY626163_p33 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 24282 24452
ARK07380.1 KY626163_p16 tail length tape-measure protein 1 phrog_1538 tail length tape measure protein tail 1 12086 13057
ARK07388.1 KY626163_p24 DNA polymerase I phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 18423 19781
ARK07374.1 KY626163_p10 hypothetical protein phrog_3614 unknown function unknown function 1 6866 7468
ARK07399.1 KY626163_p35 lysozyme phrog_33703 endolysin lysis 1 27499 27717
ARK07367.1 KY626163_p3 hypothetical protein phrog_6095 amidase lysis -1 1749 2402
ARK07378.1 KY626163_p14 hypothetical protein singleton unknown function unknown function -1 9898 10014
ARK07392.1 KY626163_p28 repressor phrog_3 transcriptional repressor transcription regulation 1 21788 21952
ARK07387.1 KY626163_p23 hypothetical protein phrog_4879 unknown function unknown function -1 18206 18391
ARK07385.1 KY626163_p21 DNA helicase singleton unknown function unknown function -1 16767 17177
ARK07376.1 KY626163_p12 hypothetical protein singleton unknown function unknown function 1 8932 9216