| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY626163 |
Definition |
Salmonella phage SE40, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; unclassified Jerseyvirus. |
DB of origin |
NUCCORE |
Length |
28914 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
36 |
%GC |
50.17 |
Number of singletons |
15 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARK07383.1 | KY626163_p19 | tail fiber protein | phrog_469 | tail protein | tail | 1 | 14795 | 15733 |
| ARK07368.1 | KY626163_p4 | neck whiskers protein | singleton | unknown function | unknown function | 1 | 3640 | 3861 |
| ARK07391.1 | KY626163_p27 | 13.88 kDa late protein | phrog_3127 | unknown function | unknown function | -1 | 21099 | 21599 |
| ARK07390.1 | KY626163_p26 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 20027 | 21055 |
| ARK07365.1 | KY626163_p1 | terminase | singleton | unknown function | unknown function | 1 | 51 | 236 |
| ARK07384.1 | KY626163_p20 | tail fibers protein | phrog_29731 | tail spike protein | tail | 1 | 15746 | 16630 |
| ARK07375.1 | KY626163_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7533 | 7673 |
| ARK07395.1 | KY626163_p31 | regulatory prophage protein | singleton | unknown function | unknown function | -1 | 22761 | 23429 |
| ARK07369.1 | KY626163_p5 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | 1 | 4302 | 5003 |
| ARK07396.1 | KY626163_p32 | regulatory prophage protein | singleton | unknown function | unknown function | -1 | 23426 | 23995 |
| ARK07372.1 | KY626163_p8 | capsid and scaffold protein | singleton | unknown function | unknown function | 1 | 5893 | 6069 |
| ARK07393.1 | KY626163_p29 | regulatory prophage protein | singleton | unknown function | unknown function | -1 | 21967 | 22125 |
| ARK07366.1 | KY626163_p2 | 62kDa structural protein | phrog_145 | portal protein | head and packaging | 1 | 249 | 1718 |
| ARK07394.1 | KY626163_p30 | hypothetical protein | singleton | unknown function | unknown function | 1 | 22148 | 22780 |
| ARK07370.1 | KY626163_p6 | capsid protein | singleton | unknown function | unknown function | 1 | 5007 | 5306 |
| ARK07377.1 | KY626163_p13 | DNA-binding protein | phrog_63 | anti-repressor Ant | transcription regulation | -1 | 9245 | 9880 |
| ARK07389.1 | KY626163_p25 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19858 | 20037 |
| ARK07400.1 | KY626163_p36 | hypothetical protein | phrog_2180 | unknown function | unknown function | 1 | 27901 | 28086 |
| ARK07379.1 | KY626163_p15 | hypothetical protein | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 10011 | 10814 |
| ARK07382.1 | KY626163_p18 | tail fiber protein | phrog_31307 | tail protein | tail | 1 | 13896 | 14726 |
| ARK07386.1 | KY626163_p22 | DNA helicase | singleton | unknown function | unknown function | -1 | 17140 | 18201 |
| ARK07371.1 | KY626163_p7 | capsid protein | phrog_15288 | major head protein | head and packaging | 1 | 5335 | 5832 |
| ARK07398.1 | KY626163_p34 | hypothetical protein | phrog_1040 | peptidase HslV family | other | 1 | 25987 | 26778 |
| ARK07373.1 | KY626163_p9 | hypothetical protein | phrog_4451 | unknown function | unknown function | 1 | 6162 | 6350 |
| ARK07381.1 | KY626163_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13780 | 13905 |
| ARK07397.1 | KY626163_p33 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 24282 | 24452 |
| ARK07380.1 | KY626163_p16 | tail length tape-measure protein 1 | phrog_1538 | tail length tape measure protein | tail | 1 | 12086 | 13057 |
| ARK07388.1 | KY626163_p24 | DNA polymerase I | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 18423 | 19781 |
| ARK07374.1 | KY626163_p10 | hypothetical protein | phrog_3614 | unknown function | unknown function | 1 | 6866 | 7468 |
| ARK07399.1 | KY626163_p35 | lysozyme | phrog_33703 | endolysin | lysis | 1 | 27499 | 27717 |
| ARK07367.1 | KY626163_p3 | hypothetical protein | phrog_6095 | amidase | lysis | -1 | 1749 | 2402 |
| ARK07378.1 | KY626163_p14 | hypothetical protein | singleton | unknown function | unknown function | -1 | 9898 | 10014 |
| ARK07392.1 | KY626163_p28 | repressor | phrog_3 | transcriptional repressor | transcription regulation | 1 | 21788 | 21952 |
| ARK07387.1 | KY626163_p23 | hypothetical protein | phrog_4879 | unknown function | unknown function | -1 | 18206 | 18391 |
| ARK07385.1 | KY626163_p21 | DNA helicase | singleton | unknown function | unknown function | -1 | 16767 | 17177 |
| ARK07376.1 | KY626163_p12 | hypothetical protein | singleton | unknown function | unknown function | 1 | 8932 | 9216 |