Genomic map of Streptococcus virus MS1 (KY629621)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY629621
Definition
Streptococcus virus MS1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
56075
Host Name
Streptococcus pneumoniae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
77
%GC
42.26
Number of singletons
17
Number of paralogs
2

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AQY55348.2 KY629621_p22 membrane protein singleton unknown function unknown function 1 14626 14817
AQY55338.1 KY629621_p52 hypothetical protein phrog_6280 unknown function unknown function 1 30539 30997
ARQ32422.1 KY629621_p5 membrane protein phrog_4899 unknown function unknown function 1 2749 3420
AQY55358.1 KY629621_p33 hypothetical protein singleton unknown function unknown function -1 18098 18283
ARQ32428.1 KY629621_p42 minor structural protein phrog_1657 head morphogenesis head and packaging 1 24567 25562
AQY55390.1 KY629621_p1 QueC phrog_1550 QueC-like queuosine biosynthesis moron, auxiliary metabolic gene and host takeover 1 94 789
AQY55337.1 KY629621_p53 hypothetical protein phrog_6541 unknown function unknown function 1 30990 31184
AQY55334.1 KY629621_p56 tail protein phrog_10693 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 35543 39223
AQY55379.1 KY629621_p12 RecA phrog_97 UvsX-like recombinase other 1 7806 8969
AQY55402.1 KY629621_p66 transcriptional regulator phrog_32660 unknown function unknown function 1 46492 46869
AQY55377.1 KY629621_p14 DNA polymerase III subunits gamma and tau phrog_5846 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 9339 10367
AQY55367.1 KY629621_p24 nucleotide pyrophosphohydrolase phrog_32278 unknown function unknown function 1 15154 15417
ARQ32425.1 KY629621_p16 DNA polymerase III subunit gamma phrog_20214 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 11201 12094
AQY55355.1 KY629621_p36 hypothetical protein singleton unknown function unknown function -1 19054 19389
ARQ32424.1 KY629621_p11 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 7315 7806
AQY55371.1 KY629621_p20 hypothetical protein phrog_31888 unknown function unknown function 1 13981 14265
AQY55372.1 KY629621_p19 hypothetical protein singleton unknown function unknown function 1 13597 13980
AQY55401.1 KY629621_p67 hypothetical protein phrog_34398 unknown function unknown function 1 46869 47315
AQY55339.1 KY629621_p51 hypothetical protein phrog_6686 tail tube protein tail 1 29738 30520
AQY55354.1 KY629621_p37 hypothetical protein phrog_35229 unknown function unknown function -1 19407 19586
AQY55399.1 KY629621_p69 DnaI phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 48121 48771
AQY55363.1 KY629621_p28 hypothetical protein singleton unknown function unknown function -1 16236 16541
AQY55382.1 KY629621_p9 RecU phrog_843 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 6293 6781
AQY55391.1 KY629621_p77 hypothetical protein phrog_4899 unknown function unknown function 1 55529 56044
AQY55364.1 KY629621_p27 RNA 2'-phosphotransferase phrog_38345 unknown function unknown function -1 15916 16239
AQY55406.1 KY629621_p62 hypothetical protein singleton unknown function unknown function 1 43170 43535
AQY55356.1 KY629621_p35 hypothetical protein phrog_421 unknown function unknown function -1 18384 19049
ARQ32427.1 KY629621_p38 hypothetical protein phrog_23746 unknown function unknown function 1 20336 21070
AQY55370.1 KY629621_p21 RpoD phrog_37166 unknown function unknown function 1 14262 14657
AQY55373.1 KY629621_p18 metal dependent phosphohydrolase phrog_28876 metal-dependent phosphohydrolase other 1 12278 13582
AQY55388.1 KY629621_p3 QueE phrog_2076 QueE-like radical SAM domain moron, auxiliary metabolic gene and host takeover 1 1306 2100
AQY55360.1 KY629621_p31 hypothetical protein phrog_1494 unknown function unknown function -1 17220 17870
AQY55383.1 KY629621_p8 RecB phrog_1706 CRISPR/Cas system associated DNA, RNA and nucleotide metabolism 1 5523 6296
AQY55408.1 KY629621_p60 holin phrog_881 holin lysis 1 42043 42273
AQY55365.1 KY629621_p26 hypothetical protein singleton unknown function unknown function -1 15655 15915
ARQ32430.1 KY629621_p64 helicase phrog_62 DNA helicase DNA, RNA and nucleotide metabolism 1 44545 46245
AQY55398.1 KY629621_p70 ribonuclease singleton unknown function unknown function 1 48758 49003
ARQ32431.1 KY629621_p71 hypothetical protein singleton unknown function unknown function 1 48969 49247
AQY55350.1 KY629621_p40 portal protein phrog_64 portal protein head and packaging 1 22495 24240
AQY55335.1 KY629621_p55 structural protein phrog_34571 tail protein tail 1 34691 35530
AQY55394.1 KY629621_p74 RNA polymerase sigma factor phrog_351 RNA polymerase sigma factor transcription regulation 1 51622 52254
AQY55343.1 KY629621_p47 hypothetical protein phrog_4020 unknown function unknown function 1 28291 28608
AQY55405.1 KY629621_p63 hypothetical protein phrog_32035 unknown function unknown function 1 43847 44548
ARQ32423.1 KY629621_p10 hypothetical protein singleton unknown function unknown function 1 6957 7346
AQY55366.1 KY629621_p25 hypothetical protein singleton unknown function unknown function -1 15442 15645
ARQ32426.1 KY629621_p23 hypothetical protein singleton unknown function unknown function 1 14958 15161
AQY55336.1 KY629621_p54 tail length tape-measure protein phrog_5493 tail length tape measure protein tail 1 31230 34679
AQY55344.1 KY629621_p46 hypothetical protein phrog_3281 endonuclease VII DNA, RNA and nucleotide metabolism 1 27960 28289
AQY55400.1 KY629621_p68 hypothetical protein phrog_33206 unknown function unknown function 1 47379 47861
AQY55341.1 KY629621_p49 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 28994 29341
AQY55378.1 KY629621_p13 DNA ligase phrog_6466 DNA ligase DNA, RNA and nucleotide metabolism 1 8971 9342
AQY55374.1 KY629621_p17 hypothetical protein singleton unknown function unknown function 1 12148 12291
AQY55393.1 KY629621_p75 single stranded DNA binding protein phrog_14578 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 52360 53118
AQY55395.1 KY629621_p73 DnaG phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 50547 51557
AQY55357.1 KY629621_p34 DNA endonuclease singleton unknown function unknown function -1 18296 18391
AQY55409.1 KY629621_p59 hypothetical protein phrog_4257 unknown function unknown function 1 41625 42056
AQY55389.1 KY629621_p2 QueD phrog_2389 QueD-like 6-pyruvoyl-tetrahydropterin synthase moron, auxiliary metabolic gene and host takeover 1 792 1313
AQY55342.1 KY629621_p48 hypothetical protein phrog_31996 unknown function unknown function 1 28605 28994
AQY55359.1 KY629621_p32 membrane protein singleton unknown function unknown function -1 17874 18086
AQY55376.1 KY629621_p15 DNA polymerase III delta prime subunit phrog_5846 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 10369 11208
AQY55340.1 KY629621_p50 hypothetical protein phrog_34317 unknown function unknown function 1 29351 29737
AQY55361.1 KY629621_p30 hypothetical protein singleton unknown function unknown function -1 17039 17236
AQY55396.1 KY629621_p72 DnaB phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 49222 50550
AQY55385.1 KY629621_p6 queuine tRNA-ribosyltransferase phrog_887 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover 1 3417 4352
AQY55384.1 KY629621_p7 DnaN phrog_947 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism 1 4453 5526
AQY55403.1 KY629621_p65 hypothetical protein singleton unknown function unknown function 1 46254 46505
AQY55347.1 KY629621_p43 structural protein phrog_194 head scaffolding protein head and packaging 1 25765 26451
AQY55407.1 KY629621_p61 lysin phrog_998 endolysin lysis 1 42273 43160
AQY55345.1 KY629621_p45 major capsid protein phrog_29 major head protein head and packaging 1 26858 27943
AQY55392.1 KY629621_p76 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 53166 55505
AQY55351.1 KY629621_p39 terminase large subunit phrog_2 terminase large subunit head and packaging 1 21048 22436
AQY55362.1 KY629621_p29 hydrolase phrog_33849 unknown function unknown function -1 16698 16907
AQY55346.1 KY629621_p44 capsid protein phrog_909 major head protein head and packaging 1 26467 26844
ARQ32429.1 KY629621_p57 tail protein phrog_372 tail protein tail 1 39234 41291
AQY55349.1 KY629621_p41 hypothetical protein phrog_1315 unknown function unknown function 1 24161 24601
ARQ32421.1 KY629621_p4 GTP cyclohydrolase I type 1 phrog_2197 GTP cyclohydrolase other 1 2102 2737
AQY55410.1 KY629621_p58 hypothetical protein phrog_2566 unknown function unknown function 1 41342 41611