| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY629621 |
Definition |
Streptococcus virus MS1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
56075 |
Host Name |
Streptococcus pneumoniae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
77 |
%GC |
42.26 |
Number of singletons |
17 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AQY55348.2 | KY629621_p22 | membrane protein | singleton | unknown function | unknown function | 1 | 14626 | 14817 |
| AQY55338.1 | KY629621_p52 | hypothetical protein | phrog_6280 | unknown function | unknown function | 1 | 30539 | 30997 |
| ARQ32422.1 | KY629621_p5 | membrane protein | phrog_4899 | unknown function | unknown function | 1 | 2749 | 3420 |
| AQY55358.1 | KY629621_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18098 | 18283 |
| ARQ32428.1 | KY629621_p42 | minor structural protein | phrog_1657 | head morphogenesis | head and packaging | 1 | 24567 | 25562 |
| AQY55390.1 | KY629621_p1 | QueC | phrog_1550 | QueC-like queuosine biosynthesis | moron, auxiliary metabolic gene and host takeover | 1 | 94 | 789 |
| AQY55337.1 | KY629621_p53 | hypothetical protein | phrog_6541 | unknown function | unknown function | 1 | 30990 | 31184 |
| AQY55334.1 | KY629621_p56 | tail protein | phrog_10693 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 35543 | 39223 |
| AQY55379.1 | KY629621_p12 | RecA | phrog_97 | UvsX-like recombinase | other | 1 | 7806 | 8969 |
| AQY55402.1 | KY629621_p66 | transcriptional regulator | phrog_32660 | unknown function | unknown function | 1 | 46492 | 46869 |
| AQY55377.1 | KY629621_p14 | DNA polymerase III subunits gamma and tau | phrog_5846 | clamp loader of DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 9339 | 10367 |
| AQY55367.1 | KY629621_p24 | nucleotide pyrophosphohydrolase | phrog_32278 | unknown function | unknown function | 1 | 15154 | 15417 |
| ARQ32425.1 | KY629621_p16 | DNA polymerase III subunit gamma | phrog_20214 | clamp loader of DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11201 | 12094 |
| AQY55355.1 | KY629621_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19054 | 19389 |
| ARQ32424.1 | KY629621_p11 | dUTPase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 7315 | 7806 |
| AQY55371.1 | KY629621_p20 | hypothetical protein | phrog_31888 | unknown function | unknown function | 1 | 13981 | 14265 |
| AQY55372.1 | KY629621_p19 | hypothetical protein | singleton | unknown function | unknown function | 1 | 13597 | 13980 |
| AQY55401.1 | KY629621_p67 | hypothetical protein | phrog_34398 | unknown function | unknown function | 1 | 46869 | 47315 |
| AQY55339.1 | KY629621_p51 | hypothetical protein | phrog_6686 | tail tube protein | tail | 1 | 29738 | 30520 |
| AQY55354.1 | KY629621_p37 | hypothetical protein | phrog_35229 | unknown function | unknown function | -1 | 19407 | 19586 |
| AQY55399.1 | KY629621_p69 | DnaI | phrog_50 | DnaC-like helicase loader | DNA, RNA and nucleotide metabolism | 1 | 48121 | 48771 |
| AQY55363.1 | KY629621_p28 | hypothetical protein | singleton | unknown function | unknown function | -1 | 16236 | 16541 |
| AQY55382.1 | KY629621_p9 | RecU | phrog_843 | Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 6293 | 6781 |
| AQY55391.1 | KY629621_p77 | hypothetical protein | phrog_4899 | unknown function | unknown function | 1 | 55529 | 56044 |
| AQY55364.1 | KY629621_p27 | RNA 2'-phosphotransferase | phrog_38345 | unknown function | unknown function | -1 | 15916 | 16239 |
| AQY55406.1 | KY629621_p62 | hypothetical protein | singleton | unknown function | unknown function | 1 | 43170 | 43535 |
| AQY55356.1 | KY629621_p35 | hypothetical protein | phrog_421 | unknown function | unknown function | -1 | 18384 | 19049 |
| ARQ32427.1 | KY629621_p38 | hypothetical protein | phrog_23746 | unknown function | unknown function | 1 | 20336 | 21070 |
| AQY55370.1 | KY629621_p21 | RpoD | phrog_37166 | unknown function | unknown function | 1 | 14262 | 14657 |
| AQY55373.1 | KY629621_p18 | metal dependent phosphohydrolase | phrog_28876 | metal-dependent phosphohydrolase | other | 1 | 12278 | 13582 |
| AQY55388.1 | KY629621_p3 | QueE | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | 1 | 1306 | 2100 |
| AQY55360.1 | KY629621_p31 | hypothetical protein | phrog_1494 | unknown function | unknown function | -1 | 17220 | 17870 |
| AQY55383.1 | KY629621_p8 | RecB | phrog_1706 | CRISPR/Cas system associated | DNA, RNA and nucleotide metabolism | 1 | 5523 | 6296 |
| AQY55408.1 | KY629621_p60 | holin | phrog_881 | holin | lysis | 1 | 42043 | 42273 |
| AQY55365.1 | KY629621_p26 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15655 | 15915 |
| ARQ32430.1 | KY629621_p64 | helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 44545 | 46245 |
| AQY55398.1 | KY629621_p70 | ribonuclease | singleton | unknown function | unknown function | 1 | 48758 | 49003 |
| ARQ32431.1 | KY629621_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48969 | 49247 |
| AQY55350.1 | KY629621_p40 | portal protein | phrog_64 | portal protein | head and packaging | 1 | 22495 | 24240 |
| AQY55335.1 | KY629621_p55 | structural protein | phrog_34571 | tail protein | tail | 1 | 34691 | 35530 |
| AQY55394.1 | KY629621_p74 | RNA polymerase sigma factor | phrog_351 | RNA polymerase sigma factor | transcription regulation | 1 | 51622 | 52254 |
| AQY55343.1 | KY629621_p47 | hypothetical protein | phrog_4020 | unknown function | unknown function | 1 | 28291 | 28608 |
| AQY55405.1 | KY629621_p63 | hypothetical protein | phrog_32035 | unknown function | unknown function | 1 | 43847 | 44548 |
| ARQ32423.1 | KY629621_p10 | hypothetical protein | singleton | unknown function | unknown function | 1 | 6957 | 7346 |
| AQY55366.1 | KY629621_p25 | hypothetical protein | singleton | unknown function | unknown function | -1 | 15442 | 15645 |
| ARQ32426.1 | KY629621_p23 | hypothetical protein | singleton | unknown function | unknown function | 1 | 14958 | 15161 |
| AQY55336.1 | KY629621_p54 | tail length tape-measure protein | phrog_5493 | tail length tape measure protein | tail | 1 | 31230 | 34679 |
| AQY55344.1 | KY629621_p46 | hypothetical protein | phrog_3281 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 27960 | 28289 |
| AQY55400.1 | KY629621_p68 | hypothetical protein | phrog_33206 | unknown function | unknown function | 1 | 47379 | 47861 |
| AQY55341.1 | KY629621_p49 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | 1 | 28994 | 29341 |
| AQY55378.1 | KY629621_p13 | DNA ligase | phrog_6466 | DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 8971 | 9342 |
| AQY55374.1 | KY629621_p17 | hypothetical protein | singleton | unknown function | unknown function | 1 | 12148 | 12291 |
| AQY55393.1 | KY629621_p75 | single stranded DNA binding protein | phrog_14578 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 52360 | 53118 |
| AQY55395.1 | KY629621_p73 | DnaG | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 50547 | 51557 |
| AQY55357.1 | KY629621_p34 | DNA endonuclease | singleton | unknown function | unknown function | -1 | 18296 | 18391 |
| AQY55409.1 | KY629621_p59 | hypothetical protein | phrog_4257 | unknown function | unknown function | 1 | 41625 | 42056 |
| AQY55389.1 | KY629621_p2 | QueD | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | 1 | 792 | 1313 |
| AQY55342.1 | KY629621_p48 | hypothetical protein | phrog_31996 | unknown function | unknown function | 1 | 28605 | 28994 |
| AQY55359.1 | KY629621_p32 | membrane protein | singleton | unknown function | unknown function | -1 | 17874 | 18086 |
| AQY55376.1 | KY629621_p15 | DNA polymerase III delta prime subunit | phrog_5846 | clamp loader of DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 10369 | 11208 |
| AQY55340.1 | KY629621_p50 | hypothetical protein | phrog_34317 | unknown function | unknown function | 1 | 29351 | 29737 |
| AQY55361.1 | KY629621_p30 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17039 | 17236 |
| AQY55396.1 | KY629621_p72 | DnaB | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 49222 | 50550 |
| AQY55385.1 | KY629621_p6 | queuine tRNA-ribosyltransferase | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 3417 | 4352 |
| AQY55384.1 | KY629621_p7 | DnaN | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | 1 | 4453 | 5526 |
| AQY55403.1 | KY629621_p65 | hypothetical protein | singleton | unknown function | unknown function | 1 | 46254 | 46505 |
| AQY55347.1 | KY629621_p43 | structural protein | phrog_194 | head scaffolding protein | head and packaging | 1 | 25765 | 26451 |
| AQY55407.1 | KY629621_p61 | lysin | phrog_998 | endolysin | lysis | 1 | 42273 | 43160 |
| AQY55345.1 | KY629621_p45 | major capsid protein | phrog_29 | major head protein | head and packaging | 1 | 26858 | 27943 |
| AQY55392.1 | KY629621_p76 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 53166 | 55505 |
| AQY55351.1 | KY629621_p39 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | 1 | 21048 | 22436 |
| AQY55362.1 | KY629621_p29 | hydrolase | phrog_33849 | unknown function | unknown function | -1 | 16698 | 16907 |
| AQY55346.1 | KY629621_p44 | capsid protein | phrog_909 | major head protein | head and packaging | 1 | 26467 | 26844 |
| ARQ32429.1 | KY629621_p57 | tail protein | phrog_372 | tail protein | tail | 1 | 39234 | 41291 |
| AQY55349.1 | KY629621_p41 | hypothetical protein | phrog_1315 | unknown function | unknown function | 1 | 24161 | 24601 |
| ARQ32421.1 | KY629621_p4 | GTP cyclohydrolase I type 1 | phrog_2197 | GTP cyclohydrolase | other | 1 | 2102 | 2737 |
| AQY55410.1 | KY629621_p58 | hypothetical protein | phrog_2566 | unknown function | unknown function | 1 | 41342 | 41611 |