Genomic map of Staphylococcus phage IME1348_01 (KY653120)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY653120
Definition
Staphylococcus phage IME1348_01, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Phietavirus; unclassified Phietavirus.
DB of origin
NUCCORE
Length
42371
Host Name
Staphylococcus epidermidis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
63
%GC
34.68
Number of singletons
2
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARM68038.1 KY653120_p24 HNH homing endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 11867 12547
ARM68017.1 KY653120_p3 hypothetical protein phrog_87 metallo-protease other -1 2275 2745
ARM68048.1 KY653120_p34 hypothetical protein phrog_5723 acetyltransferase other 1 15119 15337
ARM68019.1 KY653120_p5 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 3240 3485
ARM68051.1 KY653120_p37 terminase large subunit phrog_2 terminase large subunit head and packaging 1 16589 17854
ARM68071.1 KY653120_p57 hypothetical protein phrog_276 unknown function unknown function 1 35717 36016
ARM68054.1 KY653120_p40 capsid and scaffold protein phrog_194 head scaffolding protein head and packaging 1 20310 20834
ARM68035.1 KY653120_p21 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 10766 11125
ARM68074.1 KY653120_p60 hypothetical protein phrog_2981 unknown function unknown function 1 38619 39146
ARM68036.1 KY653120_p22 hypothetical protein phrog_1689 nucleotide kinase other 1 11122 11574
ARM68077.1 KY653120_p63 hypothetical protein phrog_4538 unknown function unknown function 1 40917 42077
ARM68046.1 KY653120_p32 hypothetical protein phrog_2409 unknown function unknown function 1 14589 14987
ARM68069.1 KY653120_p55 hypothetical protein phrog_1766 tail fiber protein tail 1 35200 35538
ARM68028.1 KY653120_p14 pathogenesis-related transcriptional factor phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 7426 8196
ARM68034.1 KY653120_p20 hypothetical protein phrog_13968 transcriptional regulator transcription regulation 1 10568 10765
ARM68052.1 KY653120_p38 portal protein phrog_64 portal protein head and packaging 1 17860 19296
ARM68075.1 KY653120_p61 holin phrog_263 holin lysis 1 39202 39468
ARM68027.1 KY653120_p13 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 7190 7420
ARM68039.1 KY653120_p25 hypothetical protein phrog_3683 unknown function unknown function 1 12544 12729
ARM68029.1 KY653120_p15 hypothetical protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 8189 8968
ARM68068.1 KY653120_p54 hypothetical protein phrog_257 minor tail protein tail 1 33663 35195
ARM68022.1 KY653120_p8 hypothetical protein phrog_253 Mu Gam-like end protection DNA, RNA and nucleotide metabolism 1 4826 5311
ARM68065.1 KY653120_p51 hypothetical protein phrog_33 distal tail protein Dit tail 1 28174 29112
ARM68061.1 KY653120_p47 hypothetical protein phrog_238 major tail protein tail 1 23591 24130
ARM68040.1 KY653120_p26 nuclease domain protein phrog_452 endonuclease DNA, RNA and nucleotide metabolism 1 12717 13073
ARM68064.1 KY653120_p50 tail length tape-measure protein phrog_58 tail length tape measure protein tail 1 25054 28158
ARM68037.1 KY653120_p23 hypothetical protein phrog_14162 unknown function unknown function 1 11564 11851
ARM68057.1 KY653120_p43 capsid and scaffold protein phrog_1161 head-tail adaptor connector 1 22112 22426
ARM68049.1 KY653120_p35 RinA family transcriptional regulator phrog_36 transcriptional regulator transcription regulation 1 15355 15771
ARM68021.1 KY653120_p7 hypothetical protein phrog_3119 unknown function unknown function 1 4582 4833
ARM68030.1 KY653120_p16 DNA replication protein phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 8981 9751
ARM68047.1 KY653120_p33 hypothetical protein phrog_1367 unknown function unknown function 1 14975 15115
ARM68059.1 KY653120_p45 capsid and scaffold protein phrog_5 tail completion or Neck1 protein connector 1 22741 23154
ARM68070.1 KY653120_p56 hypothetical protein phrog_134 unknown function unknown function 1 35540 35680
ARM68015.1 KY653120_p1 integrase phrog_95 integrase integration and excision -1 35 1411
ARM68058.1 KY653120_p44 head-tail adaptor phrog_25 head closure Hc1 connector 1 22419 22748
ARM68020.1 KY653120_p6 antirepressor protein phrog_463 anti-repressor transcription regulation 1 3497 4237
ARM68076.1 KY653120_p62 N-acetylmuramoyl-L-alanine amidase phrog_489 endolysin lysis 1 39468 40850
ARM68055.1 KY653120_p41 hypothetical protein phrog_422 major head protein head and packaging 1 20849 21805
ARM68073.1 KY653120_p59 hypothetical protein phrog_6487 unknown function unknown function 1 38110 38619
ARM68060.1 KY653120_p46 hypothetical protein phrog_176 tail terminator connector 1 23167 23604
ARM68043.1 KY653120_p29 DNA binding protein phrog_715 MazG-like pyrophosphatase other 1 13741 14055
ARM68045.1 KY653120_p31 hypothetical protein phrog_152 RinB-like transcriptional activator transcription regulation 1 14417 14587
ARM68044.1 KY653120_p30 hypothetical protein singleton unknown function unknown function 1 14104 14424
ARM68067.1 KY653120_p53 neck protein phrog_4775 pre-neck appendage protein connector 1 30997 33663
ARM68024.1 KY653120_p10 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 5938 6516
ARM68016.1 KY653120_p2 osmosensitive K+ channel histidine kinase phrog_5610 unknown function unknown function -1 1463 2278
ARM68053.1 KY653120_p39 minor capsid protein phrog_115 minor head protein head and packaging 1 19253 20206
ARM68025.1 KY653120_p11 hypothetical protein phrog_9093 unknown function unknown function 1 6528 6818
ARM68031.1 KY653120_p17 hypothetical protein phrog_809 transcriptional regulator transcription regulation 1 9745 9906
ARM68063.1 KY653120_p49 hypothetical protein phrog_1404 tail protein tail 1 24749 25051
ARM68050.1 KY653120_p36 terminase small subunit phrog_2538 terminase small subunit head and packaging 1 16225 16605
ARM68033.1 KY653120_p19 holliday junction resolvase phrog_140 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 10160 10567
ARM68066.1 KY653120_p52 minor structural protein phrog_663 minor head protein head and packaging 1 29126 30982
ARM68042.1 KY653120_p28 hypothetical protein phrog_2625 unknown function unknown function 1 13555 13740
ARM68041.1 KY653120_p27 hypothetical protein singleton unknown function unknown function 1 13077 13568
ARM68072.1 KY653120_p58 N-acetylmuramoyl-L-alanine amidase phrog_759 tail associated cell-wall hydrolase other 1 36155 38056
ARM68026.1 KY653120_p12 hypothetical protein phrog_17884 unknown function unknown function 1 6868 7212
ARM68062.1 KY653120_p48 hypothetical protein phrog_183 tail chaperone protein tail 1 24192 24686
ARM68056.1 KY653120_p42 transcriptional terminator phrog_390 Arc-like repressor transcription regulation 1 21822 22112
ARM68032.1 KY653120_p18 hypothetical protein phrog_433 unknown function unknown function 1 9906 10151
ARM68023.1 KY653120_p9 hypothetical protein phrog_155 Erf-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 5312 5935
ARM68018.1 KY653120_p4 repressor phrog_8 transcriptional regulator transcription regulation -1 2759 3073