Genomic map of Staphylococcus phage IME1346_01 (KY653125)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY653125
Definition
Staphylococcus phage IME1346_01, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Biseptimavirus; unclassified Biseptimavirus.
DB of origin
NUCCORE
Length
42689
Host Name
Staphylococcus aureus
Host domain
Bacteria
Is prophage?
undef
Number of proteins
72
%GC
33.42
Number of singletons
3
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARM68300.1 KY653125_p40 hypothetical protein phrog_386 unknown function unknown function 1 15352 15552
ARM68288.1 KY653125_p28 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 11828 12232
ARM68313.1 KY653125_p53 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 23469 23846
ARM68314.1 KY653125_p54 hypothetical protein phrog_78 tail terminator connector 1 23843 24223
ARM68284.1 KY653125_p24 replication initiation protein phrog_428 replication initiation protein DNA, RNA and nucleotide metabolism 1 9872 10642
ARM68277.1 KY653125_p17 hypothetical protein phrog_946 unknown function unknown function 1 7128 7349
ARM68264.1 KY653125_p4 hypothetical protein phrog_1176 unknown function unknown function -1 2014 2196
ARM68268.1 KY653125_p8 hypothetical protein phrog_10240 unknown function unknown function -1 3851 4390
ARM68294.1 KY653125_p34 hypothetical protein phrog_266 unknown function unknown function 1 13833 14087
ARM68331.1 KY653125_p71 hypothetical protein phrog_4954 complement inhibitor other 1 41136 41486
ARM68310.1 KY653125_p50 hypothetical protein phrog_933 unknown function unknown function 1 22648 22806
ARM68261.1 KY653125_p1 integrase phrog_1 integrase integration and excision -1 76 1113
ARM68318.1 KY653125_p58 tail length tape-measure protein singleton unknown function unknown function 1 25925 26095
ARM68311.1 KY653125_p51 DNA packaging protein phrog_40 head-tail adaptor Ad1 connector 1 22815 23147
ARM68325.1 KY653125_p65 hypothetical protein phrog_3488 holin lysis 1 36877 37020
ARM68316.1 KY653125_p56 hypothetical protein phrog_187 head-tail adaptor connector 1 25242 25688
ARM68287.1 KY653125_p27 hypothetical protein phrog_433 unknown function unknown function 1 11596 11817
ARM68295.1 KY653125_p35 hypothetical protein phrog_1235 unknown function unknown function 1 14074 14244
ARM68272.1 KY653125_p12 hypothetical protein phrog_1263 unknown function unknown function 1 5441 5581
ARM68282.1 KY653125_p22 hypothetical protein phrog_1902 unknown function unknown function 1 9383 9532
ARM68289.1 KY653125_p29 hypothetical protein phrog_299 unknown function unknown function 1 12237 12422
ARM68266.1 KY653125_p6 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 3325 3549
ARM68275.1 KY653125_p15 hypothetical protein phrog_369 unknown function unknown function 1 6604 6765
ARM68309.1 KY653125_p49 capsid protein phrog_10 major head protein head and packaging 1 21365 22612
ARM68293.1 KY653125_p33 hypothetical protein phrog_742 acetyltransferase other 1 13451 13840
ARM68329.1 KY653125_p69 N-acetylmuramoyl-L-alanine amidase phrog_5404 endolysin lysis 1 39614 39910
ARM68312.1 KY653125_p52 hypothetical protein phrog_25 head closure Hc1 connector 1 23137 23469
ARM68291.1 KY653125_p31 hypothetical protein phrog_258 virulence associated other 1 12795 13043
ARM68283.1 KY653125_p23 hypothetical protein phrog_1090 unknown function unknown function -1 9525 9806
ARM68305.1 KY653125_p45 terminase large subunit phrog_9 terminase large subunit head and packaging 1 17536 19230
ARM68278.1 KY653125_p18 hypothetical protein phrog_124 Sak4-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 7342 8121
ARM68276.1 KY653125_p16 hypothetical protein phrog_401 unknown function unknown function 1 6858 7118
ARM68303.1 KY653125_p43 hypothetical protein phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 16583 16936
ARM68285.1 KY653125_p25 DNA helicase loader phrog_50 DnaC-like helicase loader DNA, RNA and nucleotide metabolism 1 10652 11431
ARM68290.1 KY653125_p30 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 12423 12794
ARM68322.1 KY653125_p62 hypothetical protein phrog_1399 unknown function unknown function 1 35845 35997
ARM68262.1 KY653125_p2 hypothetical protein phrog_716 Na/K ATPase other 1 1220 1834
ARM68299.1 KY653125_p39 transcriptional activator phrog_152 RinB-like transcriptional activator transcription regulation 1 15203 15352
ARM68332.1 KY653125_p72 hypothetical protein phrog_18311 unknown function unknown function -1 42110 42289
ARM68317.1 KY653125_p57 hypothetical protein singleton unknown function unknown function 1 25748 25924
ARM68270.1 KY653125_p10 antirepressor protein phrog_15968 anti-repressor transcription regulation 1 4976 5197
ARM68297.1 KY653125_p37 hypothetical protein phrog_3521 unknown function unknown function 1 14810 14983
ARM68308.1 KY653125_p48 head maturation protease phrog_80 head maturation protease head and packaging 1 20693 21277
ARM68292.1 KY653125_p32 hypothetical protein phrog_98 unknown function unknown function 1 13107 13454
ARM68279.1 KY653125_p19 single stranded DNA-binding protein phrog_378 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 8152 8703
ARM68267.1 KY653125_p7 hypothetical protein phrog_6175 unknown function unknown function 1 3567 3827
ARM68326.1 KY653125_p66 holin phrog_297 holin lysis 1 37222 37476
ARM68265.1 KY653125_p5 repressor phrog_4 transcriptional repressor transcription regulation -1 2396 3166
ARM68269.1 KY653125_p9 antirepressor protein singleton unknown function unknown function 1 4447 4824
ARM68324.1 KY653125_p64 hypothetical protein phrog_276 unknown function unknown function 1 36389 36685
ARM68330.1 KY653125_p70 chemotaxis-inhibiting protein phrog_7039 chemotaxis inhibition protein moron, auxiliary metabolic gene and host takeover -1 40004 40453
ARM68320.1 KY653125_p60 hypothetical protein phrog_202 distal tail protein Dit tail 1 30564 32054
ARM68319.1 KY653125_p59 tail length tape-measure protein phrog_167 tail length tape measure protein tail 1 26092 30564
ARM68286.1 KY653125_p26 hypothetical protein phrog_809 transcriptional regulator transcription regulation 1 11425 11583
ARM68328.1 KY653125_p68 staphylokinase phrog_4358 kinase other 1 38434 38925
ARM68298.1 KY653125_p38 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 15000 15206
ARM68281.1 KY653125_p21 hypothetical protein phrog_398 unknown function unknown function 1 8895 9386
ARM68273.1 KY653125_p13 hypothetical protein phrog_4768 unknown function unknown function -1 5596 6228
ARM68327.1 KY653125_p67 N-acetylmuramoyl-L-alanine amidase phrog_635 endolysin lysis 1 37488 38243
ARM68315.1 KY653125_p55 major tail protein phrog_88 major tail protein tail 1 24224 25177
ARM68263.1 KY653125_p3 staphylokinase phrog_787 unknown function unknown function -1 1831 1956
ARM68274.1 KY653125_p14 hypothetical protein phrog_823 unknown function unknown function 1 6287 6607
ARM68307.1 KY653125_p47 portal protein phrog_12 portal protein head and packaging 1 19450 20700
ARM68323.1 KY653125_p63 hypothetical protein phrog_1747 unknown function unknown function 1 36044 36331
ARM68271.1 KY653125_p11 hypothetical protein phrog_845 unknown function unknown function 1 5213 5410
ARM68296.1 KY653125_p36 dimeric dUTPase phrog_173 nucleoside triphosphate pyrophosphohydrolase DNA, RNA and nucleotide metabolism 1 14237 14773
ARM68304.1 KY653125_p44 terminase small subunit phrog_83 terminase small subunit head and packaging 1 17066 17533
ARM68321.1 KY653125_p61 structural protein phrog_1786 minor head protein head and packaging 1 32070 35855
ARM68306.1 KY653125_p46 hypothetical protein phrog_1142 unknown function unknown function 1 19205 19444
ARM68280.1 KY653125_p20 hypothetical protein phrog_9093 unknown function unknown function 1 8716 8910
ARM68301.1 KY653125_p41 hypothetical protein phrog_1058 unknown function unknown function 1 15575 16009
ARM68302.1 KY653125_p42 hypothetical protein phrog_229 MazG-like pyrophosphatase other 1 16124 16576