Genomic map of Staphylococcus phage IME1354_01 (KY653126)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY653126
Definition
Staphylococcus phage IME1354_01, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
42706
Host Name
Staphylococcus sp.
Host domain
Bacteria
Is prophage?
undef
Number of proteins
64
%GC
34.16
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARM68394.1 KY653126_p62 hypothetical protein phrog_276 unknown function unknown function 1 39964 40335
ARM68353.1 KY653126_p21 adenine-specific methyltransferase phrog_67 DNA methyltransferase other 1 10382 11164
ARM68337.1 KY653126_p5 hypothetical protein phrog_5375 unknown function unknown function -1 2959 3528
ARM68395.1 KY653126_p63 holin phrog_962 holin lysis 1 40485 40967
ARM68357.1 KY653126_p25 hypothetical protein phrog_1689 nucleotide kinase other 1 12126 13100
ARM68335.1 KY653126_p3 hypothetical protein phrog_36168 unknown function unknown function 1 2084 2287
ARM68360.1 KY653126_p28 hypothetical protein phrog_98 unknown function unknown function 1 13736 14125
ARM68342.1 KY653126_p10 hypothetical protein phrog_37737 unknown function unknown function 1 4999 5172
ARM68351.1 KY653126_p19 hypothetical protein phrog_3161 unknown function unknown function 1 9950 10156
ARM68345.1 KY653126_p13 hypothetical protein phrog_659 Sak-like ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 5915 6547
ARM68382.1 KY653126_p50 hypothetical protein phrog_78 tail terminator connector 1 24699 25109
ARM68383.1 KY653126_p51 major tail protein phrog_88 major tail protein tail 1 25171 25791
ARM68374.1 KY653126_p42 terminase large subunit phrog_9 terminase large subunit head and packaging 1 18667 20298
ARM68338.1 KY653126_p6 hypothetical protein phrog_87 metallo-protease other -1 3543 4007
ARM68367.1 KY653126_p35 hypothetical protein phrog_278 transcriptional regulator transcription regulation 1 16063 16215
ARM68339.1 KY653126_p7 CI-like repressor phrog_8 transcriptional regulator transcription regulation -1 4020 4355
ARM68386.1 KY653126_p54 tail length tape-measure protein phrog_167 tail length tape measure protein tail 1 26502 32159
ARM68385.1 KY653126_p53 hypothetical protein phrog_567 unknown function unknown function 1 26263 26463
ARM68363.1 KY653126_p31 nuclease family protein phrog_452 endonuclease DNA, RNA and nucleotide metabolism 1 14576 14926
ARM68370.1 KY653126_p38 hypothetical protein phrog_386 unknown function unknown function 1 16572 16796
ARM68391.1 KY653126_p59 hypothetical protein phrog_257 minor tail protein tail 1 37831 39351
ARM68369.1 KY653126_p37 hypothetical protein phrog_18594 unknown function unknown function 1 16340 16567
ARM68389.1 KY653126_p57 hypothetical protein phrog_13912 minor tail protein tail 1 34580 35188
ARM68380.1 KY653126_p48 hypothetical protein phrog_25 head closure Hc1 connector 1 23956 24306
ARM68344.1 KY653126_p12 hypothetical protein phrog_946 unknown function unknown function 1 5698 5922
ARM68354.1 KY653126_p22 hypothetical protein phrog_190 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 11175 11576
ARM68347.1 KY653126_p15 hypothetical protein phrog_398 unknown function unknown function 1 6985 7665
ARM68384.1 KY653126_p52 hypothetical protein phrog_187 head-tail adaptor connector 1 25895 26221
ARM68333.1 KY653126_p1 integrase phrog_1 integrase integration and excision -1 66 1115
ARM68372.1 KY653126_p40 hypothetical protein phrog_4581 terminase small subunit head and packaging 1 17408 18142
ARM68364.1 KY653126_p32 hypothetical protein singleton unknown function unknown function 1 14933 15208
ARM68375.1 KY653126_p43 portal protein phrog_12 portal protein head and packaging 1 20310 21476
ARM68355.1 KY653126_p23 hypothetical protein phrog_28675 unknown function unknown function 1 11582 11770
ARM68376.1 KY653126_p44 protease-like protein phrog_94 head maturation protease head and packaging 1 21469 22257
ARM68340.1 KY653126_p8 hypothetical protein phrog_3 transcriptional repressor transcription regulation 1 4520 4750
ARM68348.1 KY653126_p16 replication initiation protein phrog_270 replication initiation protein DNA, RNA and nucleotide metabolism 1 7652 8356
ARM68377.1 KY653126_p45 major capsid protein phrog_10 major head protein head and packaging 1 22281 23492
ARM68349.1 KY653126_p17 hypothetical protein phrog_2289 helicase loader DNA, RNA and nucleotide metabolism 1 8360 8725
ARM68371.1 KY653126_p39 hypothetical protein phrog_1058 unknown function unknown function 1 16810 17205
ARM68365.1 KY653126_p33 hypothetical protein singleton unknown function unknown function 1 15209 15439
ARM68381.1 KY653126_p49 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 24303 24698
ARM68392.1 KY653126_p60 hypothetical protein phrog_1766 tail fiber protein tail 1 39366 39770
ARM68343.1 KY653126_p11 hypothetical protein phrog_847 anti-repressor Ant transcription regulation 1 5174 5620
ARM68358.1 KY653126_p26 DNA modification methyltransferase phrog_111 DNA methyltransferase other 1 13101 13529
ARM68387.1 KY653126_p55 tail fiber protein phrog_33 distal tail protein Dit tail 1 32161 32988
ARM68373.1 KY653126_p41 hypothetical protein phrog_1066 unknown function unknown function 1 18314 18670
ARM68396.1 KY653126_p64 N-acetylmuramoyl-L-alanine amidase phrog_635 endolysin lysis 1 40957 42393
ARM68334.1 KY653126_p2 hypothetical protein phrog_37555 unknown function unknown function -1 1178 2056
ARM68336.1 KY653126_p4 hypothetical protein phrog_21937 unknown function unknown function -1 2352 2942
ARM68350.1 KY653126_p18 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8718 9953
ARM68352.1 KY653126_p20 hypothetical protein phrog_433 unknown function unknown function 1 10147 10371
ARM68390.1 KY653126_p58 neck protein phrog_4775 pre-neck appendage protein connector 1 35205 37820
ARM68341.1 KY653126_p9 hypothetical protein phrog_5920 unknown function unknown function 1 4777 4986
ARM68388.1 KY653126_p56 tail fiber protein phrog_326 tail protein with endopeptidase domain other 1 32989 34587
ARM68368.1 KY653126_p36 hypothetical protein phrog_152 RinB-like transcriptional activator transcription regulation 1 16212 16340
ARM68359.1 KY653126_p27 hypothetical protein phrog_3683 unknown function unknown function 1 13529 13735
ARM68346.1 KY653126_p14 single-stranded DNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 6537 6971
ARM68379.1 KY653126_p47 hypothetical protein phrog_749 unknown function unknown function 1 23685 23972
ARM68362.1 KY653126_p30 hypothetical protein singleton unknown function unknown function 1 14440 14583
ARM68356.1 KY653126_p24 hypothetical protein phrog_201 Panton-Valentine leukocicin DNA, RNA and nucleotide metabolism 1 11772 12125
ARM68361.1 KY653126_p29 hypothetical protein singleton unknown function unknown function 1 14132 14440
ARM68378.1 KY653126_p46 hypothetical protein phrog_933 unknown function unknown function 1 23509 23679
ARM68393.1 KY653126_p61 hypothetical protein phrog_134 unknown function unknown function 1 39772 39924
ARM68366.1 KY653126_p34 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 15491 16015