| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY657202 |
Definition |
Salmonella phage GJL01, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Drexlerviridae; Tempevirinae; Tlsvirus; unclassified Tlsvirus. |
DB of origin |
NUCCORE |
Length |
50407 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
80 |
%GC |
42.84 |
Number of singletons |
0 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARB06658.1 | KY657202_p33 | hypothetical protein | phrog_6144 | unknown function | unknown function | -1 | 26518 | 26946 |
| ARB06640.1 | KY657202_p15 | hypothetical protein | phrog_179 | tail terminator | connector | -1 | 16011 | 16373 |
| ARB06684.1 | KY657202_p59 | hypothetical protein | phrog_6147 | unknown function | unknown function | 1 | 36302 | 36583 |
| ARB06683.1 | KY657202_p58 | hypothetical protein | phrog_6503 | unknown function | unknown function | 1 | 35850 | 36044 |
| ARB06704.1 | KY657202_p79 | transcriptional regulator | phrog_2856 | transcriptional regulator | transcription regulation | 1 | 48153 | 48761 |
| ARB06636.1 | KY657202_p11 | tail length tape-measure protein | phrog_24 | tail length tape measure protein | tail | -1 | 11681 | 14590 |
| ARB06654.1 | KY657202_p29 | hypothetical protein | phrog_2919 | unknown function | unknown function | -1 | 25575 | 25730 |
| ARB06678.1 | KY657202_p53 | hypothetical protein | phrog_4841 | unknown function | unknown function | -1 | 33193 | 33732 |
| ARB06627.1 | KY657202_p2 | single-stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 2263 | 2709 |
| ARB06691.1 | KY657202_p66 | hypothetical protein | phrog_12725 | unknown function | unknown function | 1 | 39007 | 39255 |
| ARB06664.1 | KY657202_p39 | hypothetical protein | phrog_9122 | unknown function | unknown function | -1 | 28405 | 28599 |
| ARB06635.1 | KY657202_p10 | tail tip assembly protein | phrog_14 | minor tail protein | tail | -1 | 11334 | 11681 |
| ARB06655.1 | KY657202_p30 | hypothetical protein | phrog_6666 | unknown function | unknown function | -1 | 25747 | 25956 |
| ARB06671.1 | KY657202_p46 | hypothetical protein | phrog_17726 | unknown function | unknown function | -1 | 30854 | 30961 |
| ARB06667.1 | KY657202_p42 | hypothetical protein | phrog_16293 | unknown function | unknown function | -1 | 29479 | 29661 |
| ARB06645.1 | KY657202_p20 | major capsid protein | phrog_264 | major head protein | head and packaging | -1 | 17994 | 18968 |
| ARB06633.1 | KY657202_p8 | minor tail protein | phrog_30 | minor tail protein | tail | -1 | 9789 | 10511 |
| ARB06673.1 | KY657202_p48 | hypothetical protein | phrog_7116 | unknown function | unknown function | -1 | 31381 | 31944 |
| ARB06644.1 | KY657202_p19 | hypothetical protein | phrog_2716 | unknown function | unknown function | -1 | 17660 | 17932 |
| ARB06649.1 | KY657202_p24 | head morphogenesis protein | phrog_324 | head morphogenesis | head and packaging | -1 | 21140 | 21811 |
| ARB06666.1 | KY657202_p41 | kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 28911 | 29426 |
| ARB06639.1 | KY657202_p14 | major tail protein | phrog_584 | major tail protein | tail | -1 | 15337 | 15996 |
| ARB06699.1 | KY657202_p74 | hypothetical protein | phrog_2676 | unknown function | unknown function | -1 | 44323 | 44589 |
| ARB06690.1 | KY657202_p65 | hypothetical protein | phrog_2684 | unknown function | unknown function | 1 | 38648 | 39010 |
| ARB06657.1 | KY657202_p32 | hypothetical protein | phrog_1312 | unknown function | unknown function | -1 | 26320 | 26448 |
| ARB06660.1 | KY657202_p35 | hypothetical protein | phrog_6031 | unknown function | unknown function | -1 | 27191 | 27400 |
| ARB06688.1 | KY657202_p63 | hypothetical protein | phrog_9323 | unknown function | unknown function | 1 | 37456 | 37680 |
| ARB06629.1 | KY657202_p4 | tail length tape-measure protein | phrog_11265 | tail length tape measure protein | tail | -1 | 3457 | 3747 |
| ARB06646.1 | KY657202_p21 | hypothetical protein | phrog_1989 | unknown function | unknown function | -1 | 19058 | 19498 |
| ARB06659.1 | KY657202_p34 | hypothetical protein | phrog_11097 | unknown function | unknown function | -1 | 26943 | 27194 |
| ARB06634.1 | KY657202_p9 | minor tail protein | phrog_18 | minor tail protein | tail | -1 | 10508 | 11266 |
| ARB06661.1 | KY657202_p36 | GntR-family transcriptional regulator | phrog_13504 | unknown function | unknown function | -1 | 27475 | 27972 |
| ARB06643.1 | KY657202_p18 | hypothetical protein | phrog_302 | virion structural protein | head and packaging | -1 | 17194 | 17625 |
| ARB06648.1 | KY657202_p23 | prohead protease | phrog_530 | head maturation protease | head and packaging | -1 | 20034 | 21143 |
| ARB06697.1 | KY657202_p72 | phosphoesterase | phrog_704 | DNA repair exonuclease | DNA, RNA and nucleotide metabolism | -1 | 42654 | 43769 |
| ARB06672.1 | KY657202_p47 | hypothetical protein | phrog_8382 | unknown function | unknown function | -1 | 31037 | 31321 |
| ARB06698.1 | KY657202_p73 | hypothetical protein | phrog_2817 | unknown function | unknown function | -1 | 43863 | 44141 |
| ARB06696.1 | KY657202_p71 | holin | phrog_2877 | holin | lysis | -1 | 42326 | 42541 |
| ARB06674.1 | KY657202_p49 | hypothetical protein | phrog_13854 | unknown function | unknown function | -1 | 32099 | 32359 |
| ARB06628.1 | KY657202_p3 | recombination protein | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | -1 | 2748 | 3410 |
| ARB06679.1 | KY657202_p54 | hypothetical protein | phrog_21159 | unknown function | unknown function | 1 | 34350 | 34820 |
| ARB06692.1 | KY657202_p67 | helicase | phrog_2373 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 39323 | 40903 |
| ARB06637.1 | KY657202_p12 | tape measure chaperone | phrog_680 | tail length tape measure protein | tail | -1 | 14628 | 14897 |
| ARB06647.1 | KY657202_p22 | hypothetical protein | phrog_1989 | unknown function | unknown function | -1 | 19542 | 20021 |
| ARB06626.1 | KY657202_p1 | hypothetical protein | phrog_7239 | unknown function | unknown function | 1 | 2077 | 2250 |
| ARB06689.1 | KY657202_p64 | DNA cytosine methyltransferase | phrog_757 | DNA methyltransferase | other | 1 | 37880 | 38575 |
| ARB06631.1 | KY657202_p6 | tail fiber protein | phrog_31 | central tail fiber J | tail | -1 | 5339 | 9115 |
| ARB06703.1 | KY657202_p78 | ATP-dependent helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 46091 | 48064 |
| ARB06670.1 | KY657202_p45 | polynucleotide kinase/phosphatase | phrog_415 | polynucleotide kinase | other | -1 | 30290 | 30850 |
| ARB06687.1 | KY657202_p62 | polyribonucleotide nucleotidyltransferase | phrog_4344 | unknown function | unknown function | 1 | 37233 | 37454 |
| ARB06705.1 | KY657202_p80 | DNA primase | phrog_510 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 48820 | 49746 |
| ARB06685.1 | KY657202_p60 | hypothetical protein | phrog_5016 | unknown function | unknown function | 1 | 36583 | 36816 |
| ARB06676.1 | KY657202_p51 | hypothetical protein | phrog_18849 | unknown function | unknown function | -1 | 32670 | 32903 |
| ARB06652.1 | KY657202_p27 | terminase small subunit | phrog_606 | terminase small subunit | head and packaging | -1 | 24739 | 25263 |
| ARB06702.1 | KY657202_p77 | endonuclease | phrog_824 | unknown function | unknown function | -1 | 45681 | 46088 |
| ARB06700.1 | KY657202_p75 | Dam methylase | phrog_111 | DNA methyltransferase | other | -1 | 44592 | 45329 |
| ARB06668.1 | KY657202_p43 | hypothetical protein | phrog_35378 | unknown function | unknown function | -1 | 29658 | 29939 |
| ARB06662.1 | KY657202_p37 | hypothetical protein | phrog_8758 | unknown function | unknown function | -1 | 27984 | 28229 |
| ARB06650.1 | KY657202_p25 | portal protein | phrog_146 | portal protein | head and packaging | -1 | 21808 | 23115 |
| ARB06663.1 | KY657202_p38 | hypothetical protein | phrog_14912 | unknown function | unknown function | -1 | 28226 | 28408 |
| ARB06695.1 | KY657202_p70 | endolysin | phrog_7 | endolysin | lysis | -1 | 41819 | 42265 |
| ARB06701.1 | KY657202_p76 | hypothetical protein | phrog_7420 | unknown function | unknown function | -1 | 45331 | 45609 |
| ARB06630.1 | KY657202_p5 | exodeoxyribonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | -1 | 3823 | 4908 |
| ARB06638.1 | KY657202_p13 | tape measure chaperone protein | phrog_569 | tail length tape measure protein | tail | -1 | 14945 | 15265 |
| ARB06665.1 | KY657202_p40 | hypothetical protein | phrog_25318 | unknown function | unknown function | -1 | 28602 | 28832 |
| ARB06653.1 | KY657202_p28 | hypothetical protein | phrog_5976 | unknown function | unknown function | -1 | 25351 | 25533 |
| ARB06656.1 | KY657202_p31 | hypothetical protein | phrog_303 | unknown function | unknown function | -1 | 26091 | 26318 |
| ARB06677.1 | KY657202_p52 | apolipoprotein N-acyltransferase | phrog_38282 | unknown function | unknown function | -1 | 32906 | 33190 |
| ARB06681.1 | KY657202_p56 | hypothetical protein | phrog_7421 | unknown function | unknown function | 1 | 35396 | 35620 |
| ARB06682.1 | KY657202_p57 | hypothetical protein | phrog_14152 | unknown function | unknown function | 1 | 35617 | 35853 |
| ARB06669.1 | KY657202_p44 | hypothetical protein | phrog_14011 | unknown function | unknown function | -1 | 30017 | 30205 |
| ARB06642.1 | KY657202_p17 | ribonucleoside-triphosphate reductase | phrog_161 | head closure Hc1 | connector | -1 | 16826 | 17197 |
| ARB06675.1 | KY657202_p50 | hypothetical protein | phrog_22864 | unknown function | unknown function | 1 | 32428 | 32550 |
| ARB06680.1 | KY657202_p55 | hypothetical protein | phrog_1972 | unknown function | unknown function | 1 | 35038 | 35322 |
| ARB06686.1 | KY657202_p61 | hypothetical protein | phrog_30800 | unknown function | unknown function | 1 | 36813 | 37010 |
| ARB06632.1 | KY657202_p7 | tail assembly protein | phrog_32 | tail assembly protein | tail | -1 | 9197 | 9661 |
| ARB06693.1 | KY657202_p68 | hypothetical protein | phrog_9539 | unknown function | unknown function | 1 | 41222 | 41419 |
| ARB06641.1 | KY657202_p16 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 16393 | 16764 |
| ARB06651.1 | KY657202_p26 | terminase large subunit | phrog_38 | terminase large subunit | head and packaging | -1 | 23156 | 24727 |
| ARB06694.1 | KY657202_p69 | unimolecular spanin | phrog_1804 | Rz-like spanin | lysis | -1 | 41433 | 41822 |