Genomic map of Vibrio phage pVa-3 (KY658678)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY658678
Definition
Vibrio phage pVa-3, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae.
DB of origin
NUCCORE
Length
54344
Host Name
Vibrio anguillarum
Host domain
Bacteria
Is prophage?
undef
Number of proteins
93
%GC
43.06
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARB13314.1 KY658678_p34 transcriptional regulator phrog_3 transcriptional repressor transcription regulation 1 16245 16454
ARB13261.1 KY658678_p87 tail fiber protein phrog_32680 tail fiber protein tail 1 48486 50132
ARB13284.1 KY658678_p64 hypothetical protein phrog_4810 unknown function unknown function 1 29836 29985
ARB13336.1 KY658678_p10 structural protein phrog_631 unknown function unknown function -1 3761 4453
ARB13291.1 KY658678_p58 hypothetical protein phrog_27185 unknown function unknown function 1 26387 26599
ARB13323.1 KY658678_p25 HNH endonuclease phrog_1891 HNH endonuclease DNA, RNA and nucleotide metabolism -1 10904 11518
ARB13271.1 KY658678_p77 minor tail protein phrog_14 minor tail protein tail 1 39537 39875
ARB13298.1 KY658678_p50 hypothetical protein phrog_37489 unknown function unknown function 1 22615 22890
ARB13290.1 KY658678_p59 hypothetical protein phrog_3540 unknown function unknown function 1 26596 26823
ARB13313.1 KY658678_p35 hypothetical protein phrog_35410 unknown function unknown function 1 16500 16757
ARB13273.1 KY658678_p75 hypothetical protein phrog_32937 unknown function unknown function 1 36448 36609
ARB13344.1 KY658678_p2 integrase phrog_1 integrase integration and excision 1 408 1646
ARB13270.1 KY658678_p78 minor tail protein phrog_18 minor tail protein tail 1 39889 40635
ARB13262.1 KY658678_p86 hypothetical protein phrog_30222 unknown function unknown function 1 48329 48493
ARB13285.1 KY658678_p63 terminase large subunit phrog_9 terminase large subunit head and packaging 1 28064 29782
ARB13320.1 KY658678_p28 hypothetical protein phrog_17597 unknown function unknown function -1 12025 12540
ARH11817.1 KY658678_p16 transposase phrog_2262 transposase integration and excision -1 6440 7360
ARB13260.1 KY658678_p88 tail fibers protein phrog_3916 tail fiber assembly tail 1 50132 50662
ARB13281.1 KY658678_p67 major capsid protein phrog_10 major head protein head and packaging 1 32173 33360
ARB13341.1 KY658678_p5 hypothetical protein phrog_10472 unknown function unknown function -1 2053 2349
ARB13310.1 KY658678_p38 DNA/RNA-binding protein phrog_1065 unknown function unknown function 1 17434 17721
ARB13316.1 KY658678_p32 lipoprotein phrog_890 lipoprotein other -1 15033 15446
ARB13305.1 KY658678_p43 hypothetical protein phrog_29616 unknown function unknown function 1 19829 20041
ARB13306.1 KY658678_p42 hypothetical protein phrog_34927 unknown function unknown function 1 19590 19829
ARB13328.1 KY658678_p20 hypothetical protein phrog_35022 unknown function unknown function -1 8582 9004
ARB13339.1 KY658678_p7 hypothetical protein phrog_2831 unknown function unknown function -1 2852 3178
ARB13317.1 KY658678_p31 hypothetical protein phrog_30498 unknown function unknown function -1 14724 14852
ARH11815.1 KY658678_p54 hypothetical protein phrog_20 holin lysis 1 24590 24781
ARB13318.1 KY658678_p30 hypothetical protein phrog_31073 unknown function unknown function -1 13548 13673
ARB13268.1 KY658678_p80 DNA binding protein phrog_37976 DNA binding protein DNA, RNA and nucleotide metabolism -1 41395 42069
ARB13312.1 KY658678_p36 hypothetical protein phrog_29265 unknown function unknown function 1 16761 16874
ARB13302.1 KY658678_p46 ribonuclease phrog_1770 Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 20552 21043
ARH11818.1 KY658678_p15 hypothetical protein phrog_24622 unknown function unknown function -1 6209 6337
ARB13297.1 KY658678_p51 hypothetical protein phrog_18848 unknown function unknown function -1 22945 23142
ARB13327.1 KY658678_p21 hypothetical protein phrog_5434 unknown function unknown function -1 9046 9534
ARB13277.1 KY658678_p71 hypothetical protein phrog_5 tail completion or Neck1 protein connector 1 34497 34964
ARB13342.1 KY658678_p4 hypothetical protein singleton unknown function unknown function -1 1881 2090
ARB13276.1 KY658678_p72 hypothetical protein phrog_78 tail terminator connector 1 34961 35329
ARB13335.1 KY658678_p11 hypothetical protein phrog_30035 unknown function unknown function -1 4446 4823
ARB13340.1 KY658678_p6 hypothetical protein phrog_30995 unknown function unknown function -1 2425 2850
ARB13334.1 KY658678_p12 hydrolase protein phrog_35004 unknown function unknown function -1 4824 5069
ARB13269.1 KY658678_p79 peptidase P60 phrog_30 minor tail protein tail 1 40638 41384
ARB13311.1 KY658678_p37 DNA N-6-adenine methyltransferase phrog_111 DNA methyltransferase other 1 16874 17437
ARB13299.1 KY658678_p49 cytoplasmic protein phrog_96 HNH endonuclease DNA, RNA and nucleotide metabolism 1 21575 22582
ARB13275.1 KY658678_p73 major tail protein V phrog_158 major tail protein tail 1 35425 35901
ARB13315.1 KY658678_p33 repressor protein phrog_4 transcriptional repressor transcription regulation -1 15462 16133
ARB13332.1 KY658678_p14 zinc finger protein phrog_2457 unknown function unknown function -1 5507 6199
ARB13322.1 KY658678_p26 DNA-directed RNA polymerase, beta' subunit/160 kD subunit phrog_2044 RNA polymerase beta subunit DNA, RNA and nucleotide metabolism -1 11485 11736
ARB13278.1 KY658678_p70 head-tail adaptor protein phrog_25 head closure Hc1 connector 1 34127 34495
ARB13325.1 KY658678_p23 DHH family protein phrog_4771 DHH phosphoesterase other -1 9830 10681
ARB13256.1 KY658678_p92 hypothetical protein phrog_22216 unknown function unknown function 1 52267 53217
ARB13258.1 KY658678_p90 hypothetical protein phrog_6609 unknown function unknown function 1 51414 52025
ARB13274.1 KY658678_p74 hypothetical protein phrog_1749 tail assembly chaperone tail 1 35912 36355
ARH11813.1 KY658678_p60 hypothetical protein phrog_31796 unknown function unknown function 1 26935 27228
ARB13303.1 KY658678_p45 hypothetical protein phrog_36152 unknown function unknown function 1 20230 20559
ARB13300.1 KY658678_p48 nucleoside 2-deoxyribosyltransferase phrog_355 nucleoside 2-deoxyribosyltransferase DNA, RNA and nucleotide metabolism 1 21291 21581
ARB13308.1 KY658678_p40 hypothetical protein phrog_37422 unknown function unknown function 1 18726 18896
ARB13272.1 KY658678_p76 tail length tape-measure protein 1 phrog_24 tail length tape measure protein tail 1 36622 39534
ARB13283.1 KY658678_p65 portal protein phrog_12 portal protein head and packaging 1 29985 31295
ARB13265.1 KY658678_p83 tail assembly protein I phrog_32 tail assembly protein tail 1 43059 43658
ARB13267.1 KY658678_p81 kilA-N domain protein singleton unknown function unknown function -1 42060 42374
ARB13301.1 KY658678_p47 hypothetical protein phrog_36204 unknown function unknown function 1 21040 21282
ARB13319.1 KY658678_p29 nucleoid-associated protein YejK phrog_3767 nucleoid associated protein DNA, RNA and nucleotide metabolism -1 12543 13538
ARB13331.2 KY658678_p44 hypothetical protein phrog_32628 unknown function unknown function 1 20031 20237
ARB13255.1 KY658678_p93 hypothetical protein phrog_29516 unknown function unknown function 1 53220 54032
ARB13287.1 KY658678_p61 holin phrog_144 HNH endonuclease DNA, RNA and nucleotide metabolism 1 27228 27587
ARH11819.1 KY658678_p91 hypothetical protein phrog_6699 unknown function unknown function 1 52022 52270
ARB13337.1 KY658678_p9 hypothetical protein phrog_444 unknown function unknown function -1 3376 3771
ARB13264.1 KY658678_p84 tail fiber protein phrog_31 central tail fiber J tail 1 43668 47198
ARB13343.1 KY658678_p3 transcriptional regulator AlpA family protein phrog_66 excisionase and transcriptional regulator integration and excision -1 1643 1840
ARB13329.1 KY658678_p19 hypothetical protein phrog_16568 Ren-like exclusion protein moron, auxiliary metabolic gene and host takeover -1 8187 8549
ARB13259.1 KY658678_p89 hypothetical protein phrog_38168 unknown function unknown function 1 50750 51412
ARB13280.1 KY658678_p68 hypothetical protein phrog_33317 unknown function unknown function 1 33435 33800
ARB13279.1 KY658678_p69 viral glycoprotein VI phrog_40 head-tail adaptor Ad1 connector 1 33819 34127
ARB13324.1 KY658678_p24 hypothetical protein phrog_16987 unknown function unknown function -1 10692 10901
ARB13330.1 KY658678_p18 RNA binding protein phrog_874 unknown function unknown function -1 7459 8124
ARB13295.1 KY658678_p53 hypothetical protein phrog_34963 unknown function unknown function 1 23801 24469
ARH11816.1 KY658678_p39 helix-turn-helix domain containing protein phrog_1032 replication initiation protein DNA, RNA and nucleotide metabolism 1 17705 18682
ARB13292.1 KY658678_p56 endopeptidase phrog_13 Rz-like spanin lysis 1 25333 25776
ARB13345.1 KY658678_p1 hypothetical protein phrog_29042 unknown function unknown function -1 35 175
ARB13263.1 KY658678_p85 hypothetical protein phrog_1265 membrane protein moron, auxiliary metabolic gene and host takeover 1 47195 48289
ARB13266.1 KY658678_p82 zinc ribbon domain-containing protein phrog_23817 unknown function unknown function 1 42659 42988
ARB13321.1 KY658678_p27 transcription factor protein phrog_10566 transcriptional regulator transcription regulation -1 11768 12019
ARB13293.1 KY658678_p55 lysozyme phrog_7 endolysin lysis 1 24768 25358
ARB13282.1 KY658678_p66 Clp protease-like protein phrog_1684 head maturation protease head and packaging 1 31298 32170
ARB13338.1 KY658678_p8 hypothetical protein phrog_8697 unknown function unknown function -1 3159 3374
ARB13333.1 KY658678_p13 hypothetical protein phrog_23977 unknown function unknown function -1 5062 5496
ARB13307.1 KY658678_p41 DNA-binding protein Roi phrog_63 anti-repressor Ant transcription regulation 1 18898 19593
ARB13286.1 KY658678_p62 terminase small subunit phrog_83 terminase small subunit head and packaging 1 27594 28067
ARH11814.1 KY658678_p57 hypothetical protein singleton unknown function unknown function 1 26159 26281
ARB13296.1 KY658678_p52 hypothetical protein phrog_11282 unknown function unknown function -1 23139 23570
ARB13326.1 KY658678_p22 hypothetical protein phrog_25088 unknown function unknown function -1 9568 9837
ARB13304.2 KY658678_p17 5-methylcytosine-specific restriction enzyme B singleton unknown function unknown function 1 7377 7505