| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY661963 |
Definition |
Liberibacter phage P-JXGC-3, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
NUCCORE |
Length |
31449 |
Host Name |
Candidatus Liberibacter asiaticus |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
36 |
%GC |
39.96 |
Number of singletons |
8 |
Number of paralogs |
2 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARB06710.1 | KY661963_p5 | hypothetical protein | singleton | unknown function | unknown function | 1 | 3690 | 3929 |
| ARB06709.1 | KY661963_p4 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1909 | 2127 |
| ARB06714.1 | KY661963_p9 | type I restriction-modification system, DNA-methyltransferase subunit M | phrog_2713 | unknown function | unknown function | -1 | 9052 | 10464 |
| ARB06711.1 | KY661963_p6 | DNA helicase related protein | singleton | unknown function | unknown function | 1 | 3922 | 4149 |
| ARB06724.1 | KY661963_p19 | hypothetical protein | phrog_21367 | unknown function | unknown function | 1 | 17627 | 17875 |
| ARB06706.1 | KY661963_p1 | signal recognition particle receptor protein FtsY alpha subunit | singleton | unknown function | unknown function | 1 | 123 | 1202 |
| ARB06727.1 | KY661963_p22 | hypothetical protein | phrog_9415 | unknown function | unknown function | -1 | 18768 | 19046 |
| ARB06718.1 | KY661963_p13 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13664 | 13780 |
| ARB06726.1 | KY661963_p21 | hypothetical protein | phrog_18707 | anti-repressor | transcription regulation | 1 | 18352 | 18537 |
| ARB06722.1 | KY661963_p17 | hypothetical protein | phrog_9679 | unknown function | unknown function | 1 | 16935 | 17327 |
| ARB06740.1 | KY661963_p35 | guanylate kinase | phrog_1815 | guanylate kinase | other | 1 | 30304 | 30876 |
| ARB06738.1 | KY661963_p33 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 28646 | 29950 |
| ARB06737.1 | KY661963_p32 | hypothetical protein | phrog_93 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 28269 | 28580 |
| ARB06734.1 | KY661963_p29 | antirepressor protein | phrog_130 | anti-repressor Ant | transcription regulation | 1 | 24782 | 25573 |
| ARB06728.1 | KY661963_p23 | DNA primase/helicase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 19094 | 21463 |
| ARB06730.1 | KY661963_p25 | hypothetical protein | phrog_16809 | unknown function | unknown function | -1 | 21871 | 22077 |
| ARB06735.1 | KY661963_p30 | hypothetical protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 25591 | 26241 |
| ARB06707.1 | KY661963_p2 | hypothetical protein | singleton | unknown function | unknown function | -1 | 1371 | 1505 |
| ARB06729.1 | KY661963_p24 | hypothetical protein | phrog_17714 | unknown function | unknown function | -1 | 21464 | 21853 |
| ARB06739.1 | KY661963_p34 | hypothetical protein | phrog_18456 | DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 29943 | 30302 |
| ARB06741.1 | KY661963_p36 | hypothetical protein | phrog_20262 | unknown function | unknown function | 1 | 30948 | 31334 |
| ARB06736.1 | KY661963_p31 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 26245 | 28272 |
| ARB06708.1 | KY661963_p3 | hypothetical protein | singleton | unknown function | unknown function | 1 | 1661 | 1906 |
| ARB06725.1 | KY661963_p20 | hypothetical protein | phrog_5070 | unknown function | unknown function | 1 | 17907 | 18239 |
| ARB06719.1 | KY661963_p14 | hypothetical protein | phrog_1482 | terminase small subunit | head and packaging | -1 | 13942 | 14451 |
| ARB06731.1 | KY661963_p26 | hypothetical protein | phrog_9679 | unknown function | unknown function | 1 | 22533 | 22904 |
| ARB06717.1 | KY661963_p12 | hypothetical protein | singleton | unknown function | unknown function | -1 | 13516 | 13674 |
| ARB06732.1 | KY661963_p27 | hypothetical protein | phrog_16052 | unknown function | unknown function | 1 | 22994 | 23317 |
| ARB06712.1 | KY661963_p7 | type I restriction-modification system, restriction subunit R | phrog_3830 | unknown function | unknown function | -1 | 4702 | 7752 |
| ARB06716.1 | KY661963_p11 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 12109 | 13407 |
| ARB06733.1 | KY661963_p28 | hypothetical protein | phrog_69 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 23445 | 24611 |
| ARB06713.1 | KY661963_p8 | type I restriction-modification system, specificity subunit S | phrog_2668 | unknown function | unknown function | -1 | 7756 | 8976 |
| ARB06715.1 | KY661963_p10 | type I restriction-modification system, DNA-methyltransferase subunit M | phrog_2713 | unknown function | unknown function | -1 | 10479 | 11969 |
| ARB06723.1 | KY661963_p18 | hypothetical protein | phrog_21105 | unknown function | unknown function | 1 | 17464 | 17670 |
| ARB06721.1 | KY661963_p16 | hypothetical protein | phrog_17944 | unknown function | unknown function | 1 | 16631 | 16852 |
| ARB06720.1 | KY661963_p15 | hypothetical protein | phrog_8 | transcriptional regulator | transcription regulation | -1 | 15876 | 16376 |