Genomic map of Shigella phage SFN6B (KY684082)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY684082
Definition
Shigella phage SFN6B, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Slopekvirinae; Drulisvirus; Shigella virus SFN6B.
DB of origin
NUCCORE
Length
43036
Host Name
Shigella flexneri
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
50.94
Number of singletons
0
Number of paralogs
3

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
AVD98995.1 KY684082_p40 internal core protein phrog_342 internal virion protein with endolysin domain head and packaging 1 31479 35741
AVD98981.1 KY684082_p26 hypothetical protein phrog_236 nucleotide kinase other 1 17329 17565
AVD98997.1 KY684082_p42 tail fiber protein phrog_2710 tail fiber protein tail 1 36185 37231
AVD98956.1 KY684082_p1 hypothetical protein phrog_6352 unknown function unknown function 1 1564 1791
AVD98957.1 KY684082_p2 hypothetical protein phrog_5277 unknown function unknown function 1 1867 2451
AVD98984.1 KY684082_p29 hypothetical protein phrog_5167 unknown function unknown function 1 20200 20640
AVD98974.1 KY684082_p19 hypothetical protein phrog_862 unknown function unknown function 1 13897 14721
AVD98968.1 KY684082_p13 hypothetical protein phrog_8363 unknown function unknown function 1 8115 8321
AVD98969.1 KY684082_p14 DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 8346 9602
AVD98970.1 KY684082_p15 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 9646 12027
AVD98971.1 KY684082_p16 hypothetical protein phrog_6862 unknown function unknown function 1 12024 12245
AVD98960.1 KY684082_p5 hypothetical protein phrog_5136 unknown function unknown function 1 2914 3102
AVD98996.1 KY684082_p41 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 35743 36231
AVD99001.1 KY684082_p46 hypothetical protein phrog_7375 unknown function unknown function 1 39763 39975
AVD98990.1 KY684082_p35 hypothetical protein phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 24732 25199
AVD98982.1 KY684082_p27 hypothetical protein phrog_1312 unknown function unknown function 1 17552 17668
AVD98963.1 KY684082_p8 hypothetical protein phrog_6980 unknown function unknown function 1 3396 5405
AVD98958.1 KY684082_p3 hypothetical protein phrog_10968 unknown function unknown function 1 2522 2638
AVD98978.1 KY684082_p22 hypothetical protein phrog_7652 unknown function unknown function 1 15430 15591
AVD98965.1 KY684082_p10 hypothetical protein phrog_4317 unknown function unknown function 1 6442 6912
AVD99004.1 KY684082_p49 tailspike protein phrog_28781 tail spike protein tail 1 41218 43014
AVD98967.1 KY684082_p12 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 7334 8122
AVD98979.1 KY684082_p24 beta-galactosidase phrog_6923 unknown function unknown function 1 16540 16713
AVD98988.1 KY684082_p33 capsid protein phrog_267 major head protein head and packaging 1 23417 24436
AVD98959.1 KY684082_p4 hypothetical protein phrog_7657 unknown function unknown function 1 2688 2921
AVD99003.1 KY684082_p48 endolysin phrog_7 endolysin lysis 1 40607 41218
AVD98976.1 KY684082_p21 hypothetical protein phrog_6607 unknown function unknown function 1 15057 15437
AVD98975.1 KY684082_p20 hypothetical protein phrog_10635 unknown function unknown function 1 14779 15057
AVD98977.1 KY684082_p23 5'->3' exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15591 16559
AVD98999.1 KY684082_p44 DNA maturase B phrog_38 terminase large subunit head and packaging 1 37546 39402
AVD98961.1 KY684082_p6 hypothetical protein phrog_7916 unknown function unknown function 1 3099 3296
AVD98964.1 KY684082_p9 peptidase phrog_4191 peptidase other 1 5405 6439
AVD98962.1 KY684082_p7 hypothetical protein phrog_6167 unknown function unknown function 1 3299 3643
AVD98987.1 KY684082_p32 scaffolding protein phrog_1018 head scaffolding protein head and packaging 1 22520 23392
AVD98966.1 KY684082_p11 transcription regulator phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 6909 7370
AVD98994.1 KY684082_p39 hypothetical protein phrog_2083 internal virion lysozyme motif head and packaging 1 28745 31429
AVD98973.1 KY684082_p18 transcription regulator phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 13318 13827
AVD98998.1 KY684082_p43 DNA maturase A phrog_891 terminase small subunit head and packaging 1 37244 37546
AVD98992.1 KY684082_p37 tail tubular protein B phrog_457 tail protein tail 1 25762 28140
AVD98983.1 KY684082_p28 RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 17707 20175
AVD98989.1 KY684082_p34 hypothetical protein phrog_7403 unknown function unknown function 1 24448 24645
AVD98991.1 KY684082_p36 tail tubular protein A phrog_446 tail protein tail 1 25129 25752
AVD99000.1 KY684082_p45 hypothetical protein phrog_7128 unknown function unknown function 1 39402 39779
AVD98993.1 KY684082_p38 internal virion protein phrog_4295 internal virion protein head and packaging 1 28142 28729
AVD98986.1 KY684082_p31 head-tail connector protein phrog_449 head-tail adaptor connector 1 20910 22505
AVD98985.1 KY684082_p30 hypothetical protein phrog_3112 virion structural protein head and packaging 1 20637 20900
AVD99002.1 KY684082_p47 holin phrog_20 holin lysis 1 40372 40623
AVD98972.1 KY684082_p17 hypothetical protein phrog_221 metallo-phosphoesterase other 1 12408 13388
AVD98980.1 KY684082_p25 DNA endonuclease VII phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 16910 17332