| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY684082 |
Definition |
Shigella phage SFN6B, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Slopekvirinae; Drulisvirus; Shigella virus SFN6B. |
DB of origin |
NUCCORE |
Length |
43036 |
Host Name |
Shigella flexneri |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
50.94 |
Number of singletons |
0 |
Number of paralogs |
3 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| AVD98995.1 | KY684082_p40 | internal core protein | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 31479 | 35741 |
| AVD98981.1 | KY684082_p26 | hypothetical protein | phrog_236 | nucleotide kinase | other | 1 | 17329 | 17565 |
| AVD98997.1 | KY684082_p42 | tail fiber protein | phrog_2710 | tail fiber protein | tail | 1 | 36185 | 37231 |
| AVD98956.1 | KY684082_p1 | hypothetical protein | phrog_6352 | unknown function | unknown function | 1 | 1564 | 1791 |
| AVD98957.1 | KY684082_p2 | hypothetical protein | phrog_5277 | unknown function | unknown function | 1 | 1867 | 2451 |
| AVD98984.1 | KY684082_p29 | hypothetical protein | phrog_5167 | unknown function | unknown function | 1 | 20200 | 20640 |
| AVD98974.1 | KY684082_p19 | hypothetical protein | phrog_862 | unknown function | unknown function | 1 | 13897 | 14721 |
| AVD98968.1 | KY684082_p13 | hypothetical protein | phrog_8363 | unknown function | unknown function | 1 | 8115 | 8321 |
| AVD98969.1 | KY684082_p14 | DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 8346 | 9602 |
| AVD98970.1 | KY684082_p15 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 9646 | 12027 |
| AVD98971.1 | KY684082_p16 | hypothetical protein | phrog_6862 | unknown function | unknown function | 1 | 12024 | 12245 |
| AVD98960.1 | KY684082_p5 | hypothetical protein | phrog_5136 | unknown function | unknown function | 1 | 2914 | 3102 |
| AVD98996.1 | KY684082_p41 | HNH endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 35743 | 36231 |
| AVD99001.1 | KY684082_p46 | hypothetical protein | phrog_7375 | unknown function | unknown function | 1 | 39763 | 39975 |
| AVD98990.1 | KY684082_p35 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 24732 | 25199 |
| AVD98982.1 | KY684082_p27 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 17552 | 17668 |
| AVD98963.1 | KY684082_p8 | hypothetical protein | phrog_6980 | unknown function | unknown function | 1 | 3396 | 5405 |
| AVD98958.1 | KY684082_p3 | hypothetical protein | phrog_10968 | unknown function | unknown function | 1 | 2522 | 2638 |
| AVD98978.1 | KY684082_p22 | hypothetical protein | phrog_7652 | unknown function | unknown function | 1 | 15430 | 15591 |
| AVD98965.1 | KY684082_p10 | hypothetical protein | phrog_4317 | unknown function | unknown function | 1 | 6442 | 6912 |
| AVD99004.1 | KY684082_p49 | tailspike protein | phrog_28781 | tail spike protein | tail | 1 | 41218 | 43014 |
| AVD98967.1 | KY684082_p12 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 7334 | 8122 |
| AVD98979.1 | KY684082_p24 | beta-galactosidase | phrog_6923 | unknown function | unknown function | 1 | 16540 | 16713 |
| AVD98988.1 | KY684082_p33 | capsid protein | phrog_267 | major head protein | head and packaging | 1 | 23417 | 24436 |
| AVD98959.1 | KY684082_p4 | hypothetical protein | phrog_7657 | unknown function | unknown function | 1 | 2688 | 2921 |
| AVD99003.1 | KY684082_p48 | endolysin | phrog_7 | endolysin | lysis | 1 | 40607 | 41218 |
| AVD98976.1 | KY684082_p21 | hypothetical protein | phrog_6607 | unknown function | unknown function | 1 | 15057 | 15437 |
| AVD98975.1 | KY684082_p20 | hypothetical protein | phrog_10635 | unknown function | unknown function | 1 | 14779 | 15057 |
| AVD98977.1 | KY684082_p23 | 5'->3' exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15591 | 16559 |
| AVD98999.1 | KY684082_p44 | DNA maturase B | phrog_38 | terminase large subunit | head and packaging | 1 | 37546 | 39402 |
| AVD98961.1 | KY684082_p6 | hypothetical protein | phrog_7916 | unknown function | unknown function | 1 | 3099 | 3296 |
| AVD98964.1 | KY684082_p9 | peptidase | phrog_4191 | peptidase | other | 1 | 5405 | 6439 |
| AVD98962.1 | KY684082_p7 | hypothetical protein | phrog_6167 | unknown function | unknown function | 1 | 3299 | 3643 |
| AVD98987.1 | KY684082_p32 | scaffolding protein | phrog_1018 | head scaffolding protein | head and packaging | 1 | 22520 | 23392 |
| AVD98966.1 | KY684082_p11 | transcription regulator | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 6909 | 7370 |
| AVD98994.1 | KY684082_p39 | hypothetical protein | phrog_2083 | internal virion lysozyme motif | head and packaging | 1 | 28745 | 31429 |
| AVD98973.1 | KY684082_p18 | transcription regulator | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 13318 | 13827 |
| AVD98998.1 | KY684082_p43 | DNA maturase A | phrog_891 | terminase small subunit | head and packaging | 1 | 37244 | 37546 |
| AVD98992.1 | KY684082_p37 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 25762 | 28140 |
| AVD98983.1 | KY684082_p28 | RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 17707 | 20175 |
| AVD98989.1 | KY684082_p34 | hypothetical protein | phrog_7403 | unknown function | unknown function | 1 | 24448 | 24645 |
| AVD98991.1 | KY684082_p36 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 25129 | 25752 |
| AVD99000.1 | KY684082_p45 | hypothetical protein | phrog_7128 | unknown function | unknown function | 1 | 39402 | 39779 |
| AVD98993.1 | KY684082_p38 | internal virion protein | phrog_4295 | internal virion protein | head and packaging | 1 | 28142 | 28729 |
| AVD98986.1 | KY684082_p31 | head-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 20910 | 22505 |
| AVD98985.1 | KY684082_p30 | hypothetical protein | phrog_3112 | virion structural protein | head and packaging | 1 | 20637 | 20900 |
| AVD99002.1 | KY684082_p47 | holin | phrog_20 | holin | lysis | 1 | 40372 | 40623 |
| AVD98972.1 | KY684082_p17 | hypothetical protein | phrog_221 | metallo-phosphoesterase | other | 1 | 12408 | 13388 |
| AVD98980.1 | KY684082_p25 | DNA endonuclease VII | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 16910 | 17332 |