Genomic map of Escherichia phage vB_EcoM_ECOO78 (KY705409)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY705409
Definition
Escherichia phage vB_EcoM_ECOO78, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Jilinvirus; Escherichia virus ECOO78.
DB of origin
NUCCORE
Length
41289
Host Name
Escherichia coli
Host domain
Bacteria
Is prophage?
undef
Number of proteins
56
%GC
53.07
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARM70438.1 KY705409_p33 transcriptional regulator phrog_52 tail protein tail -1 18920 20074
ARM70455.1 KY705409_p50 hypothetical protein phrog_5707 unknown function unknown function -1 33843 34199
ARM70430.1 KY705409_p25 hypothetical protein phrog_54 DksA-like zinc-finger protein other 1 14510 14719
ARM70407.1 KY705409_p2 hypothetical protein phrog_22211 unknown function unknown function -1 588 749
ARM70410.1 KY705409_p6 hypothetical protein phrog_836 late transcriptional activator transcription regulation -1 1838 2272
ARM70429.1 KY705409_p24 hypothetical protein phrog_13898 unknown function unknown function 1 14122 14517
ARM70444.1 KY705409_p39 tail protein phrog_23 tail sheath tail -1 24009 25436
ARM70415.1 KY705409_p10 primase phrog_2249 DNA primase DNA, RNA and nucleotide metabolism -1 4990 7299
ARM70441.1 KY705409_p36 tail protein phrog_28 tail length tape measure protein tail -1 20681 23026
ARM70425.1 KY705409_p20 helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 10052 11467
ARM70458.1 KY705409_p53 capsid protein phrog_21 portal protein head and packaging -1 36578 38134
ARM70445.1 KY705409_p40 hypothetical protein phrog_1766 tail fiber protein tail -1 25923 26228
ARM70447.1 KY705409_p42 tail protein-depolymerase phrog_4217 tail protein tail -1 27628 29871
ARM70451.1 KY705409_p46 hypothetical protein phrog_11 baseplate spike tail -1 31753 32406
ARM70457.1 KY705409_p52 major capsid protein phrog_617 major head protein head and packaging -1 34555 36600
ARM70454.1 KY705409_p49 hypothetical protein phrog_82 head closure Hc1 connector -1 33511 33843
ARM70449.1 KY705409_p44 tail protein phrog_6 baseplate wedge subunit tail -1 30458 31360
ARM70411.1 KY705409_p5 hypothetical protein phrog_2359 holin lysis -1 1509 1832
ARM70450.1 KY705409_p45 tail protein phrog_43 baseplate wedge subunit tail -1 31361 31699
ARM70420.1 KY705409_p15 hypothetical protein phrog_21931 unknown function unknown function -1 8332 8568
ARM70418.1 KY705409_p13 hypothetical protein phrog_4439 unknown function unknown function -1 7808 8032
ARM70426.1 KY705409_p21 hypothetical protein phrog_412 exonuclease VIII DNA, RNA and nucleotide metabolism 1 11741 12883
ARM70409.1 KY705409_p4 hypothetical protein phrog_2508 holin lysis -1 1237 1512
ARM70453.1 KY705409_p48 hypothetical protein phrog_27 tail completion or Neck1 protein connector -1 32951 33514
ARM70456.1 KY705409_p51 hypothetical protein phrog_3281 endonuclease VII DNA, RNA and nucleotide metabolism -1 34199 34546
ARM70419.1 KY705409_p14 hypothetical protein singleton unknown function unknown function -1 8036 8335
ARM70424.1 KY705409_p19 hypothetical protein phrog_28115 unknown function unknown function -1 9652 9942
ARM70437.1 KY705409_p32 hypothetical protein phrog_26870 unknown function unknown function -1 18124 18825
ARM70428.1 KY705409_p23 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision 1 13914 14141
ARM70423.1 KY705409_p18 hypothetical protein phrog_22028 unknown function unknown function -1 9215 9607
ARM70448.1 KY705409_p43 tail protein phrog_48 tail protein tail -1 29872 30465
ARM70446.1 KY705409_p41 tail protein phrog_327 tail protein tail -1 26237 27574
ARM70452.1 KY705409_p47 hypothetical protein phrog_1072 unknown function unknown function -1 32403 32975
ARM70422.1 KY705409_p17 hypothetical protein phrog_93 endonuclease DNA, RNA and nucleotide metabolism -1 8805 9215
ARM70417.1 KY705409_p12 hypothetical protein phrog_14341 transcriptional repressor transcription regulation -1 7539 7727
ARM70442.1 KY705409_p37 hypothetical protein phrog_166 tail protein tail -1 23158 23442
ARM70406.1 KY705409_p1 hypothetical protein singleton unknown function unknown function -1 205 591
ARM70408.1 KY705409_p3 lysin phrog_90 endolysin lysis -1 746 1234
ARM70414.1 KY705409_p9 DNA methylase phrog_67 DNA methyltransferase other -1 3889 4866
ARM70436.1 KY705409_p31 transcriptional regulator phrog_1033 ParB-like partition protein DNA, RNA and nucleotide metabolism -1 17162 18043
ARM70439.1 KY705409_p34 tail protein phrog_46 baseplate hub tail -1 20065 20274
ARM70460.1 KY705409_p55 large terminase subunit phrog_15 terminase large subunit head and packaging -1 38680 40722
ARM70435.1 KY705409_p30 hypothetical protein singleton unknown function unknown function -1 16933 17175
ARM70433.1 KY705409_p28 hypothetical protein singleton unknown function unknown function -1 16292 16636
ARM70416.1 KY705409_p11 hypothetical protein phrog_11642 unknown function unknown function -1 7312 7542
ARM70461.1 KY705409_p56 small terminase subunit phrog_57 terminase small subunit head and packaging -1 40688 41212
ARM70443.1 KY705409_p38 tail protein phrog_55 head closure connector -1 23503 24009
ARM70427.1 KY705409_p22 replicative DNA helicase phrog_1366 unknown function unknown function 1 12911 13900
ARM70431.1 KY705409_p26 ssDNA-binding protein phrog_44 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 14728 15225
ARM70413.1 KY705409_p8 hypothetical protein phrog_60 unknown function unknown function -1 3014 3841
ARM70412.1 KY705409_p7 hypothetical protein phrog_4947 unknown function unknown function -1 2685 3017
ARM70434.1 KY705409_p29 ATPase phrog_2529 unknown function unknown function -1 16646 16936
ARM70459.1 KY705409_p54 hypothetical protein phrog_5774 head-tail joining connector -1 38134 38673
ARM70440.1 KY705409_p35 tail protein phrog_76 tail protein tail -1 20274 20684
ARM70421.1 KY705409_p16 hypothetical protein phrog_19635 unknown function unknown function -1 8565 8729
ARM70432.1 KY705409_p27 hypothetical protein phrog_2340 endonuclease DNA, RNA and nucleotide metabolism 1 15294 15719