| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY709687 |
Definition |
Salmonella phage 29485, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
51738 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
87 |
%GC |
48.41 |
Number of singletons |
4 |
Number of paralogs |
6 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARB10842.1 | KY709687_p13 | hypothetical protein | phrog_1258 | unknown function | unknown function | -1 | 4795 | 5064 |
| ARB10852.1 | KY709687_p23 | hypothetical protein | phrog_3 | transcriptional repressor | transcription regulation | -1 | 9382 | 9591 |
| ARB10833.1 | KY709687_p4 | lysin | phrog_7 | endolysin | lysis | -1 | 1530 | 2033 |
| ARB10915.1 | KY709687_p86 | hypothetical protein | phrog_753 | anti-termination protein Q-like | transcription regulation | -1 | 50611 | 51222 |
| ARB10837.1 | KY709687_p8 | Nin protein | phrog_1402 | unknown function | unknown function | -1 | 3187 | 3366 |
| ARB10870.1 | KY709687_p41 | EaA protein | phrog_60 | unknown function | unknown function | 1 | 18640 | 19764 |
| ARB10897.1 | KY709687_p68 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 38252 | 38689 |
| ARB10839.1 | KY709687_p10 | hypothetical protein | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 3547 | 4116 |
| ARB10893.1 | KY709687_p64 | hypothetical protein | phrog_129 | transcriptional regulator | transcription regulation | -1 | 35712 | 36242 |
| ARB10860.1 | KY709687_p31 | hypothetical protein | phrog_550 | CIII anti-termination | transcription regulation | 1 | 13871 | 14041 |
| ARB10838.1 | KY709687_p9 | NinH | phrog_268 | unknown function | unknown function | -1 | 3347 | 3550 |
| ARB10914.1 | KY709687_p85 | HNH homing endonuclease | phrog_59 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 49814 | 50332 |
| ARB10866.1 | KY709687_p37 | hypothetical protein | phrog_1578 | unknown function | unknown function | 1 | 15829 | 16083 |
| ARB10888.1 | KY709687_p59 | tail length tape-measure protein 1 | phrog_1538 | tail length tape measure protein | tail | -1 | 31711 | 33966 |
| ARB10856.1 | KY709687_p27 | hypothetical protein | phrog_3946 | unknown function | unknown function | -1 | 11605 | 11808 |
| ARB10885.1 | KY709687_p56 | hypothetical protein | phrog_2735 | unknown function | unknown function | -1 | 30600 | 30860 |
| ARB10851.1 | KY709687_p22 | repressor | phrog_191 | CII-like transcriptional activator | transcription regulation | -1 | 8958 | 9248 |
| ARB10857.1 | KY709687_p28 | antitermination protein N | phrog_271 | anti-termination protein N-like | transcription regulation | 1 | 12140 | 12523 |
| ARB10902.1 | KY709687_p73 | hypothetical protein | phrog_771 | virion structural protein | head and packaging | -1 | 40075 | 41151 |
| ARB10834.1 | KY709687_p5 | holin class II | phrog_20 | holin | lysis | -1 | 2005 | 2208 |
| ARB10855.1 | KY709687_p26 | hypothetical protein | phrog_2384 | unknown function | unknown function | 1 | 10523 | 11566 |
| ARB10830.1 | KY709687_p1 | hypothetical protein | phrog_2657 | transcriptional regulator | transcription regulation | -1 | 167 | 853 |
| ARB10895.1 | KY709687_p66 | hypothetical protein | phrog_853 | major tail protein | tail | -1 | 37119 | 37853 |
| ARB10877.1 | KY709687_p48 | minor tail protein | phrog_1591 | tail fiber protein | tail | -1 | 22793 | 24091 |
| ARB10865.1 | KY709687_p36 | hypothetical protein | phrog_1117 | unknown function | unknown function | 1 | 15665 | 15832 |
| ARB10864.1 | KY709687_p35 | hypothetical protein | phrog_656 | abc2 anti-RecBCD | moron, auxiliary metabolic gene and host takeover | 1 | 15361 | 15654 |
| ARB10909.1 | KY709687_p80 | hypothetical protein | phrog_875 | unknown function | unknown function | -1 | 47396 | 47653 |
| ARB10853.1 | KY709687_p24 | repressor | phrog_4 | transcriptional repressor | transcription regulation | 1 | 9701 | 10354 |
| ARB10861.1 | KY709687_p32 | hypothetical protein | phrog_17766 | unknown function | unknown function | 1 | 14038 | 14220 |
| ARB10846.1 | KY709687_p17 | NinB | phrog_72 | NinB/ Orf homologous recombination mediator | DNA, RNA and nucleotide metabolism | -1 | 5883 | 6320 |
| ARB10880.1 | KY709687_p51 | tail assembly protein | phrog_32 | tail assembly protein | tail | -1 | 28250 | 28597 |
| ARB10859.1 | KY709687_p30 | hypothetical protein | phrog_3054 | unknown function | unknown function | 1 | 13266 | 13631 |
| ARB10905.1 | KY709687_p76 | hypothetical protein | phrog_758 | head morphogenesis | head and packaging | -1 | 42899 | 43825 |
| ARB10900.1 | KY709687_p71 | hypothetical protein | phrog_786 | unknown function | unknown function | -1 | 39311 | 39712 |
| ARB10916.1 | KY709687_p87 | hypothetical protein | phrog_3496 | unknown function | unknown function | -1 | 51380 | 51622 |
| ARB10874.1 | KY709687_p45 | hypothetical protein | phrog_28248 | unknown function | unknown function | 1 | 20590 | 20964 |
| ARB10854.1 | KY709687_p25 | hypothetical protein | singleton | unknown function | unknown function | 1 | 10338 | 10469 |
| ARB10903.1 | KY709687_p74 | hypothetical protein | phrog_766 | head decoration | head and packaging | -1 | 41169 | 41618 |
| ARB10873.1 | KY709687_p44 | hypothetical protein | singleton | unknown function | unknown function | 1 | 20478 | 20603 |
| ARB10911.1 | KY709687_p82 | endopeptidase | phrog_13 | Rz-like spanin | lysis | -1 | 48357 | 48824 |
| ARB10848.1 | KY709687_p19 | replicative DNA helicase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | -1 | 6595 | 7971 |
| ARB10845.1 | KY709687_p16 | NinE | phrog_288 | unknown function | unknown function | -1 | 5570 | 5746 |
| ARB10906.1 | KY709687_p77 | hypothetical protein | phrog_146 | portal protein | head and packaging | -1 | 43785 | 45134 |
| ARB10850.1 | KY709687_p21 | hypothetical protein | phrog_1331 | unknown function | unknown function | -1 | 8776 | 8937 |
| ARB10840.1 | KY709687_p11 | holliday junction resolvase | phrog_34 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | -1 | 4113 | 4508 |
| ARB10867.1 | KY709687_p38 | EaD protein | phrog_250 | unknown function | unknown function | 1 | 16070 | 16936 |
| ARB10883.1 | KY709687_p54 | minor tail protein | phrog_18 | minor tail protein | tail | -1 | 29439 | 30143 |
| ARB10891.1 | KY709687_p62 | hypothetical protein | phrog_3556 | unknown function | unknown function | -1 | 34853 | 35230 |
| ARB10871.1 | KY709687_p42 | hypothetical protein | phrog_14783 | unknown function | unknown function | 1 | 19764 | 19949 |
| ARB10886.1 | KY709687_p57 | minor tail protein | phrog_14 | minor tail protein | tail | -1 | 30872 | 31219 |
| ARB10884.1 | KY709687_p55 | hypothetical protein | phrog_10490 | unknown function | unknown function | 1 | 30308 | 30595 |
| ARB10901.1 | KY709687_p72 | head completion protein | phrog_5877 | unknown function | unknown function | -1 | 39772 | 40065 |
| ARB10887.1 | KY709687_p58 | hypothetical protein | phrog_13469 | unknown function | unknown function | 1 | 31312 | 31710 |
| ARB10878.1 | KY709687_p49 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 24102 | 25076 |
| ARB10841.1 | KY709687_p12 | hypothetical protein | phrog_131 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 4505 | 4795 |
| ARB10836.1 | KY709687_p7 | antitermination protein Q | phrog_943 | anti-termination protein Q-like | transcription regulation | -1 | 2672 | 3190 |
| ARB10868.1 | KY709687_p39 | hypothetical protein | phrog_1258 | unknown function | unknown function | 1 | 17193 | 17486 |
| ARB10872.1 | KY709687_p43 | hypothetical protein | phrog_2100 | unknown function | unknown function | 1 | 20068 | 20346 |
| ARB10862.1 | KY709687_p33 | DNA-binding protein | phrog_1097 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 14323 | 15030 |
| ARB10844.1 | KY709687_p15 | NinX | phrog_444 | unknown function | unknown function | -1 | 5226 | 5567 |
| ARB10892.1 | KY709687_p63 | hypothetical protein | phrog_4293 | unknown function | unknown function | -1 | 35223 | 35597 |
| ARB10832.1 | KY709687_p3 | outer membrane lytic protein | phrog_13 | Rz-like spanin | lysis | -1 | 1066 | 1533 |
| ARB10912.1 | KY709687_p83 | lysozyme | phrog_7 | endolysin | lysis | -1 | 48821 | 49318 |
| ARB10896.1 | KY709687_p67 | hypothetical protein | phrog_782 | unknown function | unknown function | -1 | 37869 | 38255 |
| ARB10899.1 | KY709687_p70 | hypothetical protein | phrog_1261 | unknown function | unknown function | -1 | 39123 | 39311 |
| ARB10858.1 | KY709687_p29 | superinfection exclusion protein | phrog_1301 | superinfection exclusion; inhibits SieB | moron, auxiliary metabolic gene and host takeover | -1 | 12544 | 13122 |
| ARB10869.1 | KY709687_p40 | EaD protein | phrog_60 | unknown function | unknown function | 1 | 17483 | 18643 |
| ARB10863.1 | KY709687_p34 | anti-RecBCD1 | phrog_323 | transcriptional regulator, D5-like | transcription regulation | 1 | 15030 | 15314 |
| ARB10849.1 | KY709687_p20 | origin specific replication initiation factor | phrog_345 | replication initiation O-like | DNA, RNA and nucleotide metabolism | -1 | 7968 | 8789 |
| ARB10835.1 | KY709687_p6 | hypothetical protein | singleton | unknown function | unknown function | 1 | 2453 | 2566 |
| ARB10904.1 | KY709687_p75 | hypothetical protein | phrog_760 | unknown function | unknown function | -1 | 41631 | 42896 |
| ARB10894.1 | KY709687_p65 | hypothetical protein | phrog_791 | unknown function | unknown function | -1 | 36426 | 37079 |
| ARB10913.1 | KY709687_p84 | hypothetical protein | phrog_1350 | holin | lysis | -1 | 49318 | 49590 |
| ARB10876.1 | KY709687_p47 | mobile element protein | phrog_1 | integrase | integration and excision | 1 | 21489 | 22340 |
| ARB10831.1 | KY709687_p2 | hypothetical protein | phrog_16173 | unknown function | unknown function | -1 | 840 | 1031 |
| ARB10847.1 | KY709687_p18 | hypothetical protein | phrog_6308 | unknown function | unknown function | -1 | 6301 | 6513 |
| ARB10843.1 | KY709687_p14 | NinF | phrog_672 | unknown function | unknown function | -1 | 5057 | 5233 |
| ARB10908.1 | KY709687_p79 | terminase small subunit | phrog_51 | terminase small subunit | head and packaging | -1 | 46570 | 47001 |
| ARB10882.1 | KY709687_p53 | tail assembly protein | phrog_30 | minor tail protein | tail | -1 | 28720 | 29439 |
| ARB10881.1 | KY709687_p52 | hypothetical protein | phrog_3743 | unknown function | unknown function | 1 | 28586 | 28750 |
| ARB10898.1 | KY709687_p69 | hypothetical protein | phrog_797 | unknown function | unknown function | -1 | 38777 | 39139 |
| ARB10910.1 | KY709687_p81 | hypothetical protein | phrog_129 | transcriptional regulator | transcription regulation | -1 | 47650 | 48147 |
| ARB10890.1 | KY709687_p61 | hypothetical protein | phrog_7441 | unknown function | unknown function | -1 | 34417 | 34770 |
| ARB10907.1 | KY709687_p78 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 45267 | 46586 |
| ARB10889.1 | KY709687_p60 | hypothetical protein | singleton | unknown function | unknown function | -1 | 34028 | 34315 |
| ARB10879.1 | KY709687_p50 | tail fiber protein | phrog_31 | central tail fiber J | tail | -1 | 25070 | 28240 |
| ARB10875.1 | KY709687_p46 | excisionase | phrog_629 | excisionase | integration and excision | 1 | 21074 | 21292 |