Genomic map of Pseudomonas virus WRT (KY798120)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY798120
Definition
Pseudomonas virus WRT, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Ghunavirus.
DB of origin
NUCCORE
Length
40214
Host Name
Pseudomonas fluorescens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
49
%GC
57.42
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARM69601.1 KY798120_p37 tail tubular protein B phrog_457 tail protein tail 1 24504 26930
ARM69584.1 KY798120_p20 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis 1 11593 12033
ARM69611.1 KY798120_p47 Rz1-like protein phrog_4306 Rz-like spanin lysis 1 37405 37659
ARM69574.1 KY798120_p10 hypothetical protein phrog_13030 RNA polymerase DNA, RNA and nucleotide metabolism 1 6901 7038
ARM69608.1 KY798120_p44 holin phrog_920 holin lysis 1 36785 37000
ARM69602.1 KY798120_p38 internal virion protein A phrog_308 internal virion protein head and packaging 1 26989 27423
ARM69581.1 KY798120_p17 hypothetical protein phrog_5138 unknown function unknown function 1 10024 10392
ARM69598.1 KY798120_p34 scaffolding protein phrog_1052 head assembly head and packaging 1 21825 22700
ARM69593.1 KY798120_p29 hypothetical protein phrog_1447 unknown function unknown function 1 18879 19121
ARM69578.1 KY798120_p14 hypothetical protein phrog_1777 unknown function unknown function 1 8962 9219
ARM69579.1 KY798120_p15 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 9216 9863
ARM69613.1 KY798120_p49 hypothetical protein phrog_2193 unknown function unknown function 1 39631 39804
ARM69585.1 KY798120_p21 nucleotidyl transferase phrog_1614 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 12103 12642
ARM69603.1 KY798120_p39 internal virion protein B phrog_805 internal virion protein head and packaging 1 27434 28021
ARM69595.1 KY798120_p31 hypothetical protein phrog_3986 unknown function unknown function 1 19393 19836
ARM69590.1 KY798120_p26 hypothetical protein phrog_1452 Gp5.5-like host HNS inhibition moron, auxiliary metabolic gene and host takeover 1 17284 17667
ARM69568.1 KY798120_p4 hypothetical protein phrog_7806 unknown function unknown function 1 1709 2188
ARM69567.1 KY798120_p3 hypothetical protein phrog_30554 unknown function unknown function 1 1379 1621
ARM69594.1 KY798120_p30 hypothetical protein phrog_1391 unknown function unknown function 1 19124 19396
ARM69604.1 KY798120_p40 internal virion protein C phrog_1339 internal virion protein head and packaging 1 28014 30230
ARM69612.1 KY798120_p48 DNA packaging protein large subunit phrog_38 terminase large subunit head and packaging 1 37703 39451
ARM69575.1 KY798120_p11 hypothetical protein phrog_11287 unknown function unknown function 1 7035 7307
ARM69610.1 KY798120_p46 Rz-like endopeptidase phrog_1327 Rz-like spanin lysis 1 37254 37703
ARM69588.1 KY798120_p24 hypothetical protein phrog_9312 unknown function unknown function 1 14606 15115
ARM69586.1 KY798120_p22 DNA primase/helicase phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 12629 14320
ARM69600.1 KY798120_p36 tail tubular protein A phrog_446 tail protein tail 1 23907 24494
ARM69577.1 KY798120_p13 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 7705 8769
ARM69565.1 KY798120_p1 hypothetical protein phrog_16407 unknown function unknown function 1 935 1189
ARM69572.1 KY798120_p8 hypothetical protein phrog_9238 unknown function unknown function 1 3661 4101
ARM69571.1 KY798120_p7 hypothetical protein phrog_19243 unknown function unknown function 1 3456 3659
ARM69592.1 KY798120_p28 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 17866 18810
ARM69583.1 KY798120_p19 endonuclease I phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 11147 11590
ARM69582.1 KY798120_p18 single-stranded DNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 10446 11147
ARM69599.1 KY798120_p35 major capsid protein phrog_267 major head protein head and packaging 1 22800 23843
ARM69576.1 KY798120_p12 hypothetical protein phrog_12775 unknown function unknown function 1 7307 7693
ARM69573.1 KY798120_p9 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 4230 6887
ARM69569.1 KY798120_p5 hypothetical protein phrog_8679 unknown function unknown function 1 2219 2755
ARM69609.1 KY798120_p45 DNA packaging protein small subunit phrog_1351 terminase small subunit head and packaging 1 36997 37254
ARM69566.1 KY798120_p2 hypothetical protein phrog_7884 unknown function unknown function 1 1189 1386
ARM69580.1 KY798120_p16 host RNA-polymerase inhibitor phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 9860 10027
ARM69587.1 KY798120_p23 hypothetical protein phrog_9727 unknown function unknown function 1 14339 14542
ARM69596.1 KY798120_p32 tail assembly protein phrog_1320 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 19808 20110
ARM69591.1 KY798120_p27 hypothetical protein phrog_1334 unknown function unknown function 1 17660 17869
ARM69606.1 KY798120_p42 tail fiber protein phrog_4242 tail fiber protein tail 1 34485 36389
ARM69570.1 KY798120_p6 hypothetical protein phrog_61 2OG-Fe(II) oxygenase moron, auxiliary metabolic gene and host takeover 1 2752 3456
ARM69589.1 KY798120_p25 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 15126 17273
ARM69605.1 KY798120_p41 internal virion protein D phrog_342 internal virion protein with endolysin domain head and packaging 1 30243 34421
ARM69597.1 KY798120_p33 head-to-tail connector protein phrog_449 head-tail adaptor connector 1 20125 21756
ARM69607.1 KY798120_p43 hypothetical protein phrog_1795 tail fiber protein tail 1 36405 36785