| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY798120 |
Definition |
Pseudomonas virus WRT, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Ghunavirus. |
DB of origin |
NUCCORE |
Length |
40214 |
Host Name |
Pseudomonas fluorescens |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
49 |
%GC |
57.42 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARM69601.1 | KY798120_p37 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 24504 | 26930 |
| ARM69584.1 | KY798120_p20 | N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | 1 | 11593 | 12033 |
| ARM69611.1 | KY798120_p47 | Rz1-like protein | phrog_4306 | Rz-like spanin | lysis | 1 | 37405 | 37659 |
| ARM69574.1 | KY798120_p10 | hypothetical protein | phrog_13030 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 6901 | 7038 |
| ARM69608.1 | KY798120_p44 | holin | phrog_920 | holin | lysis | 1 | 36785 | 37000 |
| ARM69602.1 | KY798120_p38 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 26989 | 27423 |
| ARM69581.1 | KY798120_p17 | hypothetical protein | phrog_5138 | unknown function | unknown function | 1 | 10024 | 10392 |
| ARM69598.1 | KY798120_p34 | scaffolding protein | phrog_1052 | head assembly | head and packaging | 1 | 21825 | 22700 |
| ARM69593.1 | KY798120_p29 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 18879 | 19121 |
| ARM69578.1 | KY798120_p14 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 8962 | 9219 |
| ARM69579.1 | KY798120_p15 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 9216 | 9863 |
| ARM69613.1 | KY798120_p49 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 39631 | 39804 |
| ARM69585.1 | KY798120_p21 | nucleotidyl transferase | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 12103 | 12642 |
| ARM69603.1 | KY798120_p39 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 27434 | 28021 |
| ARM69595.1 | KY798120_p31 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 19393 | 19836 |
| ARM69590.1 | KY798120_p26 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 17284 | 17667 |
| ARM69568.1 | KY798120_p4 | hypothetical protein | phrog_7806 | unknown function | unknown function | 1 | 1709 | 2188 |
| ARM69567.1 | KY798120_p3 | hypothetical protein | phrog_30554 | unknown function | unknown function | 1 | 1379 | 1621 |
| ARM69594.1 | KY798120_p30 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 19124 | 19396 |
| ARM69604.1 | KY798120_p40 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 28014 | 30230 |
| ARM69612.1 | KY798120_p48 | DNA packaging protein large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 37703 | 39451 |
| ARM69575.1 | KY798120_p11 | hypothetical protein | phrog_11287 | unknown function | unknown function | 1 | 7035 | 7307 |
| ARM69610.1 | KY798120_p46 | Rz-like endopeptidase | phrog_1327 | Rz-like spanin | lysis | 1 | 37254 | 37703 |
| ARM69588.1 | KY798120_p24 | hypothetical protein | phrog_9312 | unknown function | unknown function | 1 | 14606 | 15115 |
| ARM69586.1 | KY798120_p22 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 12629 | 14320 |
| ARM69600.1 | KY798120_p36 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 23907 | 24494 |
| ARM69577.1 | KY798120_p13 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7705 | 8769 |
| ARM69565.1 | KY798120_p1 | hypothetical protein | phrog_16407 | unknown function | unknown function | 1 | 935 | 1189 |
| ARM69572.1 | KY798120_p8 | hypothetical protein | phrog_9238 | unknown function | unknown function | 1 | 3661 | 4101 |
| ARM69571.1 | KY798120_p7 | hypothetical protein | phrog_19243 | unknown function | unknown function | 1 | 3456 | 3659 |
| ARM69592.1 | KY798120_p28 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 17866 | 18810 |
| ARM69583.1 | KY798120_p19 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11147 | 11590 |
| ARM69582.1 | KY798120_p18 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 10446 | 11147 |
| ARM69599.1 | KY798120_p35 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 22800 | 23843 |
| ARM69576.1 | KY798120_p12 | hypothetical protein | phrog_12775 | unknown function | unknown function | 1 | 7307 | 7693 |
| ARM69573.1 | KY798120_p9 | DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4230 | 6887 |
| ARM69569.1 | KY798120_p5 | hypothetical protein | phrog_8679 | unknown function | unknown function | 1 | 2219 | 2755 |
| ARM69609.1 | KY798120_p45 | DNA packaging protein small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 36997 | 37254 |
| ARM69566.1 | KY798120_p2 | hypothetical protein | phrog_7884 | unknown function | unknown function | 1 | 1189 | 1386 |
| ARM69580.1 | KY798120_p16 | host RNA-polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 9860 | 10027 |
| ARM69587.1 | KY798120_p23 | hypothetical protein | phrog_9727 | unknown function | unknown function | 1 | 14339 | 14542 |
| ARM69596.1 | KY798120_p32 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 19808 | 20110 |
| ARM69591.1 | KY798120_p27 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 17660 | 17869 |
| ARM69606.1 | KY798120_p42 | tail fiber protein | phrog_4242 | tail fiber protein | tail | 1 | 34485 | 36389 |
| ARM69570.1 | KY798120_p6 | hypothetical protein | phrog_61 | 2OG-Fe(II) oxygenase | moron, auxiliary metabolic gene and host takeover | 1 | 2752 | 3456 |
| ARM69589.1 | KY798120_p25 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 15126 | 17273 |
| ARM69605.1 | KY798120_p41 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 30243 | 34421 |
| ARM69597.1 | KY798120_p33 | head-to-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 20125 | 21756 |
| ARM69607.1 | KY798120_p43 | hypothetical protein | phrog_1795 | tail fiber protein | tail | 1 | 36405 | 36785 |