| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY798121 |
Definition |
Pseudomonas virus KNP, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Ghunavirus. |
DB of origin |
NUCCORE |
Length |
40491 |
Host Name |
Pseudomonas fluorescens |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
50 |
%GC |
57.29 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARM69636.1 | KY798121_p23 | DNA primase/helicase | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 12913 | 14604 |
| ARM69644.1 | KY798121_p31 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 19408 | 19680 |
| ARM69658.1 | KY798121_p45 | holin | phrog_920 | holin | lysis | 1 | 37063 | 37278 |
| ARM69640.1 | KY798121_p27 | hypothetical protein | phrog_1452 | Gp5.5-like host HNS inhibition | moron, auxiliary metabolic gene and host takeover | 1 | 17568 | 17951 |
| ARM69621.1 | KY798121_p8 | hypothetical protein | phrog_9238 | unknown function | unknown function | 1 | 3664 | 4104 |
| ARM69646.1 | KY798121_p33 | tail assembly protein | phrog_1320 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 20092 | 20394 |
| ARM69653.1 | KY798121_p40 | internal virion protein B | phrog_805 | internal virion protein | head and packaging | 1 | 27718 | 28299 |
| ARM69638.1 | KY798121_p25 | hypothetical protein | phrog_9312 | unknown function | unknown function | 1 | 14890 | 15399 |
| ARM69616.1 | KY798121_p3 | hypothetical protein | phrog_30554 | unknown function | unknown function | 1 | 1382 | 1624 |
| ARM69662.1 | KY798121_p49 | DNA packaging protein large subunit | phrog_38 | terminase large subunit | head and packaging | 1 | 37981 | 39729 |
| ARM69633.1 | KY798121_p20 | endonuclease I | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 11431 | 11874 |
| ARM69647.1 | KY798121_p34 | head-to-tail connector protein | phrog_449 | head-tail adaptor | connector | 1 | 20409 | 22040 |
| ARM69655.1 | KY798121_p42 | internal virion protein D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 30528 | 34706 |
| ARM69657.1 | KY798121_p44 | hypothetical protein | phrog_1795 | tail fiber protein | tail | 1 | 36704 | 37063 |
| ARM69652.1 | KY798121_p39 | internal virion protein A | phrog_308 | internal virion protein | head and packaging | 1 | 27273 | 27707 |
| ARM69625.1 | KY798121_p12 | hypothetical protein | phrog_12775 | unknown function | unknown function | 1 | 7309 | 7695 |
| ARM69645.1 | KY798121_p32 | hypothetical protein | phrog_3986 | unknown function | unknown function | 1 | 19677 | 20120 |
| ARM69656.1 | KY798121_p43 | tail fiber protein | phrog_4242 | tail fiber protein | tail | 1 | 34769 | 36664 |
| ARM69631.1 | KY798121_p18 | hypothetical protein | phrog_5138 | unknown function | unknown function | 1 | 10308 | 10676 |
| ARM69659.1 | KY798121_p46 | DNA packaging protein small subunit | phrog_1351 | terminase small subunit | head and packaging | 1 | 37275 | 37532 |
| ARM69622.1 | KY798121_p9 | DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 4232 | 6889 |
| ARM69623.1 | KY798121_p10 | hypothetical protein | phrog_13030 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 6903 | 7040 |
| ARM69634.1 | KY798121_p21 | N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | 1 | 11877 | 12317 |
| ARM69626.1 | KY798121_p13 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 7707 | 8771 |
| ARM69660.1 | KY798121_p47 | Rz-like endopeptidase | phrog_1327 | Rz-like spanin | lysis | 1 | 37532 | 37981 |
| ARM69661.1 | KY798121_p48 | Rz1-like protein | phrog_4306 | Rz-like spanin | lysis | 1 | 37683 | 37937 |
| ARM69614.1 | KY798121_p1 | hypothetical protein | phrog_16407 | unknown function | unknown function | 1 | 938 | 1192 |
| ARM69641.1 | KY798121_p28 | hypothetical protein | phrog_1334 | unknown function | unknown function | 1 | 17944 | 18153 |
| ARM69632.1 | KY798121_p19 | single-stranded DNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 10730 | 11431 |
| ARM69642.1 | KY798121_p29 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 18150 | 19094 |
| ARM69617.1 | KY798121_p4 | hypothetical protein | phrog_7806 | unknown function | unknown function | 1 | 1712 | 2191 |
| ARM69629.1 | KY798121_p16 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 9500 | 10147 |
| ARM69639.1 | KY798121_p26 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 15410 | 17557 |
| ARM69615.1 | KY798121_p2 | hypothetical protein | phrog_7884 | unknown function | unknown function | 1 | 1192 | 1389 |
| ARM69649.1 | KY798121_p36 | major capsid protein | phrog_267 | major head protein | head and packaging | 1 | 23084 | 24127 |
| ARM69663.1 | KY798121_p50 | hypothetical protein | phrog_2193 | unknown function | unknown function | 1 | 39908 | 40081 |
| ARM69619.1 | KY798121_p6 | hypothetical protein | phrog_61 | 2OG-Fe(II) oxygenase | moron, auxiliary metabolic gene and host takeover | 1 | 2755 | 3459 |
| ARM69627.1 | KY798121_p14 | hypothetical protein | phrog_21934 | unknown function | unknown function | 1 | 8775 | 9053 |
| ARM69650.1 | KY798121_p37 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 24191 | 24778 |
| ARM69618.1 | KY798121_p5 | hypothetical protein | phrog_8679 | unknown function | unknown function | 1 | 2222 | 2758 |
| ARM69628.1 | KY798121_p15 | hypothetical protein | phrog_1777 | unknown function | unknown function | 1 | 9246 | 9503 |
| ARM69637.1 | KY798121_p24 | hypothetical protein | phrog_9727 | unknown function | unknown function | 1 | 14623 | 14826 |
| ARM69643.1 | KY798121_p30 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 19163 | 19405 |
| ARM69635.1 | KY798121_p22 | nucleotidyl transferase | phrog_1614 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 12387 | 12926 |
| ARM69624.1 | KY798121_p11 | hypothetical protein | phrog_11287 | unknown function | unknown function | 1 | 7037 | 7309 |
| ARM69651.1 | KY798121_p38 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 24788 | 27214 |
| ARM69654.1 | KY798121_p41 | internal virion protein C | phrog_1339 | internal virion protein | head and packaging | 1 | 28299 | 30515 |
| ARM69630.1 | KY798121_p17 | host RNA-polymerase inhibitor | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 10144 | 10311 |
| ARM69620.1 | KY798121_p7 | hypothetical protein | phrog_19243 | unknown function | unknown function | 1 | 3459 | 3662 |
| ARM69648.1 | KY798121_p35 | scaffolding protein | phrog_1052 | head assembly | head and packaging | 1 | 22109 | 22984 |