| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY860935 |
Definition |
Salmonella phage LPST10, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae. |
DB of origin |
NUCCORE |
Length |
47657 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
87 |
%GC |
45.53 |
Number of singletons |
8 |
Number of paralogs |
4 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARK07798.1 | KY860935_p66 | hypothetical protein | phrog_146 | portal protein | head and packaging | -1 | 37030 | 38433 |
| ARK07787.1 | KY860935_p55 | hypothetical protein | phrog_16624 | unknown function | unknown function | 1 | 31816 | 32124 |
| ARK07771.1 | KY860935_p39 | hypothetical protein | phrog_322 | unknown function | unknown function | -1 | 25136 | 25483 |
| ARK07803.1 | KY860935_p71 | hypothetical protein | singleton | unknown function | unknown function | 1 | 39469 | 39621 |
| ARK07804.1 | KY860935_p72 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 39650 | 41074 |
| ARK07745.1 | KY860935_p13 | hypothetical protein | phrog_384 | virion structural protein | head and packaging | -1 | 11731 | 12204 |
| ARK07774.1 | KY860935_p42 | hypothetical protein | phrog_760 | unknown function | unknown function | -1 | 27066 | 28352 |
| ARK07759.1 | KY860935_p27 | hypothetical protein | phrog_797 | unknown function | unknown function | -1 | 21021 | 21362 |
| ARK07750.1 | KY860935_p18 | hypothetical protein | singleton | unknown function | unknown function | 1 | 17328 | 17603 |
| ARK07779.1 | KY860935_p47 | hypothetical protein | phrog_1687 | MarR family transcrition regulator | transcription regulation | -1 | 29679 | 30011 |
| ARK07733.1 | KY860935_p1 | hypothetical protein | singleton | unknown function | unknown function | 1 | 751 | 903 |
| ARK07805.1 | KY860935_p73 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | -1 | 41067 | 41579 |
| ARK07734.1 | KY860935_p2 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 890 | 1363 |
| ARK07816.1 | KY860935_p84 | replicative DNA helicase | phrog_33132 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 45062 | 46549 |
| ARK07763.1 | KY860935_p31 | hypothetical protein | phrog_34767 | unknown function | unknown function | -1 | 22489 | 22608 |
| ARK07760.1 | KY860935_p28 | hypothetical protein | phrog_786 | unknown function | unknown function | -1 | 21359 | 21751 |
| ARK07785.1 | KY860935_p53 | hypothetical protein | phrog_17775 | unknown function | unknown function | 1 | 31101 | 31592 |
| ARK07748.1 | KY860935_p16 | tail length tape-measure protein 1 | phrog_1107 | tail length tape measure protein | tail | -1 | 13229 | 16522 |
| ARK07739.1 | KY860935_p7 | recombinase | phrog_155 | Erf-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 4892 | 5554 |
| ARK07752.1 | KY860935_p20 | hypothetical protein | phrog_17424 | unknown function | unknown function | 1 | 18023 | 18166 |
| ARK07770.1 | KY860935_p38 | hypothetical protein | phrog_2138 | unknown function | unknown function | -1 | 24946 | 25143 |
| ARK07801.1 | KY860935_p69 | hypothetical protein | phrog_13627 | unknown function | unknown function | -1 | 38934 | 39104 |
| ARK07761.1 | KY860935_p29 | hypothetical protein | phrog_13738 | membrane protein | moron, auxiliary metabolic gene and host takeover | -1 | 21732 | 21995 |
| ARK07795.1 | KY860935_p63 | hypothetical protein | phrog_21280 | unknown function | unknown function | 1 | 34742 | 34885 |
| ARK07782.1 | KY860935_p50 | hypothetical protein | phrog_15697 | unknown function | unknown function | -1 | 30401 | 30595 |
| ARK07762.1 | KY860935_p30 | hypothetical protein | phrog_14688 | lipoprotein | other | -1 | 22049 | 22489 |
| ARK07742.1 | KY860935_p10 | tail protein | phrog_469 | tail protein | tail | -1 | 8403 | 10835 |
| ARK07757.1 | KY860935_p25 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 20135 | 20626 |
| ARK07755.1 | KY860935_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 19303 | 19470 |
| ARK07813.1 | KY860935_p81 | hypothetical protein | phrog_16924 | unknown function | unknown function | -1 | 43821 | 44003 |
| ARK07749.1 | KY860935_p17 | hypothetical protein | phrog_791 | unknown function | unknown function | -1 | 16522 | 17229 |
| ARK07743.1 | KY860935_p11 | tail assembly protein | phrog_329 | minor tail protein | tail | -1 | 10798 | 11268 |
| ARK07773.1 | KY860935_p41 | coat protein | phrog_766 | head decoration | head and packaging | -1 | 26599 | 27066 |
| ARK07809.1 | KY860935_p77 | hypothetical protein | phrog_9340 | unknown function | unknown function | -1 | 42578 | 42691 |
| ARK07736.1 | KY860935_p4 | hypothetical protein | phrog_824 | unknown function | unknown function | 1 | 3276 | 3701 |
| ARK07808.1 | KY860935_p76 | hypothetical protein | phrog_5407 | unknown function | unknown function | -1 | 42406 | 42585 |
| ARK07807.1 | KY860935_p75 | hypothetical protein | phrog_18384 | unknown function | unknown function | -1 | 42246 | 42419 |
| ARK07797.1 | KY860935_p65 | head decoration protein | phrog_758 | head morphogenesis | head and packaging | -1 | 36093 | 37049 |
| ARK07802.1 | KY860935_p70 | hypothetical protein | phrog_13301 | unknown function | unknown function | -1 | 39108 | 39314 |
| ARK07758.1 | KY860935_p26 | hypothetical protein | phrog_5 | tail completion or Neck1 protein | connector | -1 | 20623 | 21021 |
| ARK07772.1 | KY860935_p40 | coat protein | phrog_771 | virion structural protein | head and packaging | -1 | 25526 | 26596 |
| ARK07783.1 | KY860935_p51 | hypothetical protein | phrog_27614 | unknown function | unknown function | -1 | 30606 | 30809 |
| ARK07815.1 | KY860935_p83 | hypothetical protein | phrog_28399 | unknown function | unknown function | 1 | 44841 | 45062 |
| ARK07786.1 | KY860935_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31589 | 31816 |
| ARK07738.1 | KY860935_p6 | exonuclease | phrog_412 | exonuclease VIII | DNA, RNA and nucleotide metabolism | 1 | 3918 | 4874 |
| ARK07740.1 | KY860935_p8 | single stranded DNA-binding protein | phrog_44 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 5558 | 6040 |
| ARK07754.1 | KY860935_p22 | neck whiskers protein | phrog_853 | major tail protein | tail | -1 | 18388 | 19104 |
| ARK07792.1 | KY860935_p60 | lysozyme | phrog_10457 | endolysin | lysis | -1 | 33426 | 33704 |
| ARK07789.1 | KY860935_p57 | inner-membrane spanin protein Rz | phrog_312 | Rz-like spanin | lysis | -1 | 32264 | 32752 |
| ARK07746.1 | KY860935_p14 | hypothetical protein | singleton | unknown function | unknown function | -1 | 12195 | 12308 |
| ARK07799.1 | KY860935_p67 | hypothetical protein | phrog_25285 | unknown function | unknown function | -1 | 38480 | 38728 |
| ARK07796.1 | KY860935_p64 | hypothetical protein | phrog_681 | endonuclease | DNA, RNA and nucleotide metabolism | -1 | 35095 | 35997 |
| ARK07819.1 | KY860935_p87 | DNA primase/helicase | singleton | unknown function | unknown function | -1 | 47347 | 47559 |
| ARK07793.1 | KY860935_p61 | homing endonuclease | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 33805 | 34284 |
| ARK07735.1 | KY860935_p3 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 1367 | 3289 |
| ARK07817.1 | KY860935_p85 | hypothetical protein | phrog_38095 | unknown function | unknown function | 1 | 46546 | 46905 |
| ARK07769.1 | KY860935_p37 | DNA polymerase III beta subunit | phrog_3007 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 24378 | 24914 |
| ARK07784.1 | KY860935_p52 | hypothetical protein | phrog_14963 | unknown function | unknown function | 1 | 30910 | 31104 |
| ARK07756.1 | KY860935_p24 | hypothetical protein | phrog_782 | unknown function | unknown function | -1 | 19590 | 19964 |
| ARK07768.1 | KY860935_p36 | hypothetical protein | phrog_4439 | unknown function | unknown function | 1 | 24205 | 24378 |
| ARK07778.1 | KY860935_p46 | hypothetical protein | phrog_17117 | unknown function | unknown function | -1 | 29537 | 29713 |
| ARK07780.1 | KY860935_p48 | hypothetical protein | phrog_34336 | unknown function | unknown function | -1 | 30008 | 30166 |
| ARK07776.1 | KY860935_p44 | hypothetical protein | phrog_14549 | unknown function | unknown function | -1 | 28799 | 29125 |
| ARK07775.1 | KY860935_p43 | hypothetical protein | phrog_18423 | unknown function | unknown function | -1 | 28546 | 28692 |
| ARK07751.1 | KY860935_p19 | hypothetical protein | phrog_2315 | unknown function | unknown function | 1 | 17720 | 18013 |
| ARK07767.1 | KY860935_p35 | hypothetical protein | singleton | unknown function | unknown function | 1 | 23990 | 24208 |
| ARK07812.1 | KY860935_p80 | hypothetical protein | phrog_10786 | unknown function | unknown function | -1 | 43551 | 43784 |
| ARK07791.1 | KY860935_p59 | lysin | phrog_90 | endolysin | lysis | -1 | 32972 | 33436 |
| ARK07747.1 | KY860935_p15 | hypothetical protein | phrog_681 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 12341 | 13216 |
| ARK07764.1 | KY860935_p32 | hypothetical protein | phrog_14587 | anti-restriction protein | moron, auxiliary metabolic gene and host takeover | 1 | 22725 | 22985 |
| ARK07753.1 | KY860935_p21 | hypothetical protein | phrog_924 | unknown function | unknown function | 1 | 18163 | 18357 |
| ARK07744.1 | KY860935_p12 | hypothetical protein | phrog_396 | minor tail protein | tail | -1 | 11261 | 11731 |
| ARK07790.1 | KY860935_p58 | holin protein | phrog_13249 | holin | lysis | -1 | 32736 | 32975 |
| ARK07811.1 | KY860935_p79 | eae protein | phrog_492 | unknown function | unknown function | -1 | 43093 | 43554 |
| ARK07810.1 | KY860935_p78 | hypothetical protein | phrog_3126 | unknown function | unknown function | -1 | 42749 | 43096 |
| ARK07806.1 | KY860935_p74 | hypothetical protein | phrog_9747 | unknown function | unknown function | -1 | 41683 | 42099 |
| ARK07818.1 | KY860935_p86 | hypothetical protein | phrog_29997 | unknown function | unknown function | 1 | 46905 | 47315 |
| ARK07737.1 | KY860935_p5 | hypothetical protein | phrog_7393 | unknown function | unknown function | 1 | 3741 | 3917 |
| ARK07741.1 | KY860935_p9 | tail fibers protein | phrog_1819 | tail spike protein | tail | -1 | 6336 | 8363 |
| ARK07794.1 | KY860935_p62 | hypothetical protein | phrog_4334 | unknown function | unknown function | 1 | 34355 | 34732 |
| ARK07800.1 | KY860935_p68 | hypothetical protein | phrog_26739 | unknown function | unknown function | -1 | 38728 | 38934 |
| ARK07814.1 | KY860935_p82 | hypothetical protein | phrog_2180 | unknown function | unknown function | -1 | 44184 | 44330 |
| ARK07788.1 | KY860935_p56 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 32096 | 32251 |
| ARK07781.1 | KY860935_p49 | zinc-binding domain of primase-helicase | phrog_599 | Lar-like restriction alleviation protein | moron, auxiliary metabolic gene and host takeover | -1 | 30156 | 30404 |
| ARK07777.1 | KY860935_p45 | hypothetical protein | phrog_343 | unknown function | unknown function | -1 | 29122 | 29553 |
| ARK07766.1 | KY860935_p34 | transcriptional regulator | phrog_1033 | ParB-like partition protein | DNA, RNA and nucleotide metabolism | 1 | 23181 | 23990 |
| ARK07765.1 | KY860935_p33 | hypothetical protein | phrog_8760 | unknown function | unknown function | 1 | 22988 | 23179 |