| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY883642 |
Definition |
Vibrio phage JSF15, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Enhodamvirus; unclassified Enhodamvirus. |
DB of origin |
NUCCORE |
Length |
39643 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
46 |
%GC |
50.71 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASV42823.1 | KY883642_p23 | hypothetical protein | phrog_9197 | unknown function | unknown function | -1 | 17009 | 17233 |
| ASV42812.1 | KY883642_p12 | hypothetical protein | phrog_2378 | unknown function | unknown function | -1 | 10171 | 10638 |
| ASV42839.1 | KY883642_p39 | hypothetical protein | phrog_894 | endolysin | lysis | 1 | 27974 | 28447 |
| ASV42804.1 | KY883642_p4 | hypothetical protein | phrog_10658 | unknown function | unknown function | -1 | 2504 | 2665 |
| ASV42808.1 | KY883642_p8 | integrase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | -1 | 4511 | 6799 |
| ASV42842.1 | KY883642_p42 | hypothetical protein | phrog_376 | tail protein | tail | 1 | 31009 | 32793 |
| ASV42831.1 | KY883642_p31 | hypothetical protein | phrog_332 | head-tail adaptor | connector | 1 | 22288 | 23931 |
| ASV42815.1 | KY883642_p15 | hypothetical protein | phrog_8941 | unknown function | unknown function | -1 | 12588 | 13280 |
| ASV42807.1 | KY883642_p7 | adenylosuccinate synthetase | phrog_1211 | 2-aminooxy adenylosuccinate synthetase | DNA, RNA and nucleotide metabolism | -1 | 3438 | 4469 |
| ASV42838.1 | KY883642_p38 | hypothetical protein | phrog_8135 | unknown function | unknown function | 1 | 27607 | 27972 |
| ASV42803.1 | KY883642_p3 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 2077 | 2514 |
| ASV42801.1 | KY883642_p1 | EF hand domain/PKD domain protein | phrog_8700 | unknown function | unknown function | 1 | 345 | 1658 |
| ASV42830.1 | KY883642_p30 | terminase | phrog_2 | terminase large subunit | head and packaging | 1 | 20571 | 22277 |
| ASV42832.1 | KY883642_p32 | hypothetical protein | phrog_9429 | unknown function | unknown function | 1 | 23931 | 24158 |
| ASV42845.1 | KY883642_p45 | hypothetical protein | phrog_8824 | unknown function | unknown function | 1 | 35284 | 36456 |
| ASV42836.1 | KY883642_p36 | hypothetical protein | phrog_8977 | unknown function | unknown function | 1 | 26478 | 26747 |
| ASV42840.1 | KY883642_p40 | hypothetical protein | phrog_8910 | unknown function | unknown function | 1 | 28440 | 28742 |
| ASV42814.1 | KY883642_p14 | hypothetical protein | phrog_9940 | unknown function | unknown function | -1 | 12235 | 12588 |
| ASV42810.1 | KY883642_p10 | single stranded DNA-binding protein | phrog_7364 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 8699 | 9175 |
| ASV42846.1 | KY883642_p46 | hypothetical protein | phrog_684 | virion structural protein | head and packaging | 1 | 36458 | 38806 |
| ASV42802.1 | KY883642_p2 | hypothetical protein | phrog_474 | phosphofructokinase | other | -1 | 1683 | 2000 |
| ASV42819.1 | KY883642_p19 | hypothetical protein | phrog_9688 | unknown function | unknown function | -1 | 14677 | 15477 |
| ASV42816.1 | KY883642_p16 | hypothetical protein | phrog_4049 | unknown function | unknown function | -1 | 13430 | 13849 |
| ASV42813.1 | KY883642_p13 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | -1 | 10701 | 12170 |
| ASV42818.1 | KY883642_p18 | hypothetical protein | phrog_9382 | unknown function | unknown function | -1 | 14303 | 14629 |
| ASV42805.1 | KY883642_p5 | hydrolase | phrog_7076 | dATP triphosphohydrolase | DNA, RNA and nucleotide metabolism | -1 | 2662 | 3174 |
| ASV42817.1 | KY883642_p17 | hypothetical protein | phrog_3392 | unknown function | unknown function | -1 | 13891 | 14301 |
| ASV42828.1 | KY883642_p28 | hypothetical protein | phrog_9836 | unknown function | unknown function | 1 | 19846 | 20067 |
| ASV42824.1 | KY883642_p24 | hypothetical protein | phrog_9131 | unknown function | unknown function | -1 | 17311 | 17601 |
| ASV42820.1 | KY883642_p20 | hypothetical protein | phrog_9060 | unknown function | unknown function | -1 | 15546 | 16031 |
| ASV42844.1 | KY883642_p44 | hypothetical protein | phrog_9153 | unknown function | unknown function | 1 | 33200 | 35284 |
| ASV42825.1 | KY883642_p25 | hypothetical protein | phrog_9346 | unknown function | unknown function | -1 | 17708 | 17947 |
| ASV42829.1 | KY883642_p29 | hypothetical protein | phrog_8823 | terminase small subunit | head and packaging | 1 | 20084 | 20584 |
| ASV42835.1 | KY883642_p35 | hypothetical protein | phrog_3437 | major head protein | head and packaging | 1 | 25443 | 26411 |
| ASV42841.1 | KY883642_p41 | PE family protein | phrog_9239 | tail tubular protein | tail | 1 | 28766 | 31000 |
| ASV42827.1 | KY883642_p27 | hypothetical protein | phrog_29496 | unknown function | unknown function | -1 | 19137 | 19406 |
| ASV42811.1 | KY883642_p11 | hypothetical protein | phrog_2402 | unknown function | unknown function | -1 | 9241 | 10050 |
| ASV42826.1 | KY883642_p26 | hypothetical protein | phrog_8878 | unknown function | unknown function | -1 | 17958 | 18548 |
| ASV42821.1 | KY883642_p21 | hypothetical protein | phrog_3600 | antimicrobial peptide resistance and lipid A acylation protein PagP | moron, auxiliary metabolic gene and host takeover | -1 | 16041 | 16535 |
| ASV42806.1 | KY883642_p6 | hypothetical protein | phrog_9860 | unknown function | unknown function | -1 | 3176 | 3436 |
| ASV42837.1 | KY883642_p37 | hypothetical protein | phrog_8869 | unknown function | unknown function | 1 | 26762 | 27610 |
| ASV42843.1 | KY883642_p43 | hypothetical protein | phrog_9290 | unknown function | unknown function | 1 | 32799 | 33203 |
| ASV42833.1 | KY883642_p33 | hypothetical protein | phrog_5977 | unknown function | unknown function | 1 | 24171 | 24428 |
| ASV42834.1 | KY883642_p34 | hypothetical protein | phrog_3742 | unknown function | unknown function | 1 | 24433 | 25275 |
| ASV42809.1 | KY883642_p9 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | -1 | 6789 | 8690 |
| ASV42822.1 | KY883642_p22 | hypothetical protein | phrog_9495 | unknown function | unknown function | -1 | 16638 | 17012 |