Genomic map of Vibrio phage JSF30 (KY883644)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY883644
Definition
Vibrio phage JSF30, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Chatterjeevirus; unclassified Chatterjeevirus.
DB of origin
NUCCORE
Length
38056
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
42.79
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASV42896.1 KY883644_p2 hypothetical protein phrog_12315 unknown function unknown function 1 1026 1574
ASV42900.1 KY883644_p6 DNA packaging protein phrog_38 terminase large subunit head and packaging 1 2253 4013
ASV42912.1 KY883644_p18 hypothetical protein phrog_5138 unknown function unknown function 1 12592 12987
ASV42897.1 KY883644_p3 DNA packaging protein A phrog_1351 terminase small subunit head and packaging 1 1586 1819
ASV42940.1 KY883644_p46 protein inside capsid B phrog_805 internal virion protein head and packaging 1 31831 32415
ASV42895.1 KY883644_p1 class II holin phrog_920 holin lysis 1 832 1026
ASV42941.1 KY883644_p47 protein inside capsid C phrog_1339 internal virion protein head and packaging 1 32483 34660
ASV42916.1 KY883644_p22 hypothetical protein phrog_10620 unknown function unknown function 1 15453 15911
ASV42935.1 KY883644_p41 capsid and scaffold protein phrog_267 major head protein head and packaging 1 26428 27552
ASV42923.1 KY883644_p29 HNS binding protein phrog_1334 unknown function unknown function 1 19209 19406
ASV42906.1 KY883644_p12 hypothetical protein phrog_37734 unknown function unknown function 1 10410 10535
ASV42922.1 KY883644_p28 hypothetical protein phrog_14683 unknown function unknown function 1 19027 19197
ASV42913.1 KY883644_p19 hypothetical protein phrog_11152 unknown function unknown function 1 13092 13289
ASV42915.1 KY883644_p21 hypothetical protein phrog_10688 unknown function unknown function 1 15053 15367
ASV42937.1 KY883644_p43 tail tubular protein B phrog_457 tail protein tail 1 28223 30607
ASV42904.1 KY883644_p10 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 6596 9247
ASV42920.1 KY883644_p26 hypothetical protein phrog_10513 unknown function unknown function 1 18503 18895
ASV42898.1 KY883644_p4 hypothetical protein phrog_4712 holin lysis 1 1838 1981
ASV42926.1 KY883644_p32 ssDNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 20779 21450
ASV42910.1 KY883644_p16 hypothetical protein phrog_11648 unknown function unknown function 1 12104 12256
ASV42932.1 KY883644_p38 host specificity protein B phrog_10099 unknown function unknown function 1 23463 23753
ASV42903.1 KY883644_p9 hypothetical protein phrog_13599 unknown function unknown function 1 6002 6202
ASV42911.1 KY883644_p17 hypothetical protein phrog_10197 unknown function unknown function 1 12295 12576
ASV42905.1 KY883644_p11 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 9433 10413
ASV42902.1 KY883644_p8 hypothetical protein phrog_11474 unknown function unknown function 1 5814 6005
ASV42929.1 KY883644_p35 hypothetical protein phrog_1447 unknown function unknown function 1 22472 22753
ASV42942.1 KY883644_p48 protein inside capsid D phrog_342 internal virion protein with endolysin domain head and packaging 1 34673 38056
ASV42908.1 KY883644_p14 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 11035 11718
ASV42909.1 KY883644_p15 host RNA polymerase inhibitory protein phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 11760 11933
ASV42919.1 KY883644_p25 hypothetical protein phrog_10985 unknown function unknown function 1 18170 18373
ASV42927.1 KY883644_p33 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 21450 21902
ASV42925.1 KY883644_p31 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 19812 20687
ASV42938.1 KY883644_p44 proton/sodium-glutamate symport protein phrog_761 thymidylate kinase other 1 30695 31327
ASV42899.1 KY883644_p5 hypothetical protein phrog_10167 unknown function unknown function 1 1981 2178
ASV42931.1 KY883644_p37 host specificity protein A phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 23056 23463
ASV42933.1 KY883644_p39 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 23771 25369
ASV42924.1 KY883644_p30 nucleotide reductase subunit C phrog_2294 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 19406 19819
ASV42921.1 KY883644_p27 hypothetical protein phrog_11673 unknown function unknown function 1 18882 19073
ASV42917.1 KY883644_p23 hypothetical protein phrog_10848 unknown function unknown function 1 15898 16155
ASV42918.1 KY883644_p24 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 16162 18198
ASV42936.1 KY883644_p42 tail tubular protein A phrog_446 tail protein tail 1 27618 28211
ASV42914.1 KY883644_p20 primase/helicase protein phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 13271 14992
ASV42901.1 KY883644_p7 S-adenosyl-L-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other 1 5262 5693
ASV42930.1 KY883644_p36 hypothetical protein phrog_1391 unknown function unknown function 1 22769 23020
ASV42939.1 KY883644_p45 protein inside capsid A phrog_308 internal virion protein head and packaging 1 31320 31838
ASV42934.1 KY883644_p40 capsid and scaffold protein phrog_1052 head assembly head and packaging 1 25449 26309
ASV42907.1 KY883644_p13 hypothetical protein phrog_11350 unknown function unknown function 1 10697 11023
ASV42928.1 KY883644_p34 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis 1 21902 22336