| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY883647 |
Definition |
Vibrio phage JSF33, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Enhodamvirus; unclassified Enhodamvirus. |
DB of origin |
NUCCORE |
Length |
39661 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
46 |
%GC |
50.64 |
Number of singletons |
0 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASV43043.1 | KY883647_p6 | hypothetical protein | phrog_9131 | unknown function | unknown function | 1 | 4820 | 5110 |
| ASV43061.1 | KY883647_p24 | hypothetical protein | phrog_9860 | unknown function | unknown function | 1 | 18985 | 19245 |
| ASV43064.1 | KY883647_p27 | hypothetical protein | phrog_2165 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 19907 | 20344 |
| ASV43056.1 | KY883647_p19 | hypothetical protein | phrog_2402 | unknown function | unknown function | 1 | 12371 | 13180 |
| ASV43051.1 | KY883647_p14 | hypothetical protein | phrog_4049 | unknown function | unknown function | 1 | 8572 | 8991 |
| ASV43052.1 | KY883647_p15 | hypothetical protein | phrog_8941 | unknown function | unknown function | 1 | 9141 | 9833 |
| ASV43039.1 | KY883647_p2 | hypothetical protein | phrog_9836 | unknown function | unknown function | -1 | 2358 | 2579 |
| ASV43079.1 | KY883647_p42 | hypothetical protein | phrog_3437 | major head protein | head and packaging | -1 | 35539 | 36507 |
| ASV43058.1 | KY883647_p21 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 13764 | 15632 |
| ASV43042.1 | KY883647_p5 | hypothetical protein | phrog_9346 | unknown function | unknown function | 1 | 4474 | 4713 |
| ASV43045.1 | KY883647_p8 | hypothetical protein | phrog_9495 | unknown function | unknown function | 1 | 5409 | 5783 |
| ASV43044.1 | KY883647_p7 | hypothetical protein | phrog_9197 | unknown function | unknown function | 1 | 5188 | 5412 |
| ASV43054.1 | KY883647_p17 | DNA helicase | phrog_62 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 10251 | 11720 |
| ASV43048.1 | KY883647_p11 | hypothetical protein | phrog_9688 | unknown function | unknown function | 1 | 6974 | 7744 |
| ASV43041.1 | KY883647_p4 | hypothetical protein | phrog_8878 | unknown function | unknown function | 1 | 3873 | 4463 |
| ASV43074.1 | KY883647_p37 | hypothetical protein | phrog_8910 | unknown function | unknown function | -1 | 33208 | 33510 |
| ASV43078.1 | KY883647_p41 | hypothetical protein | phrog_8977 | unknown function | unknown function | -1 | 35203 | 35472 |
| ASV43046.1 | KY883647_p9 | hypothetical protein | phrog_3600 | antimicrobial peptide resistance and lipid A acylation protein PagP | moron, auxiliary metabolic gene and host takeover | 1 | 5886 | 6380 |
| ASV43076.1 | KY883647_p39 | hypothetical protein | phrog_8135 | unknown function | unknown function | -1 | 33978 | 34343 |
| ASV43047.1 | KY883647_p10 | hypothetical protein | phrog_9060 | unknown function | unknown function | 1 | 6390 | 6875 |
| ASV43063.1 | KY883647_p26 | hypothetical protein | phrog_10658 | unknown function | unknown function | 1 | 19756 | 19917 |
| ASV43071.1 | KY883647_p34 | hypothetical protein | phrog_9290 | unknown function | unknown function | -1 | 28759 | 29157 |
| ASV43049.1 | KY883647_p12 | hypothetical protein | phrog_9382 | unknown function | unknown function | 1 | 7792 | 8118 |
| ASV43073.1 | KY883647_p36 | PE family protein | phrog_9239 | tail tubular protein | tail | -1 | 30953 | 33184 |
| ASV43075.1 | KY883647_p38 | hypothetical protein | phrog_894 | endolysin | lysis | -1 | 33503 | 33976 |
| ASV43068.1 | KY883647_p31 | hypothetical protein | phrog_684 | virion structural protein | head and packaging | -1 | 23156 | 25504 |
| ASV43057.1 | KY883647_p20 | single stranded DNA-binding protein | phrog_7364 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 13246 | 13722 |
| ASV43066.1 | KY883647_p29 | EF hand domain/PKD domain protein | phrog_8700 | unknown function | unknown function | -1 | 20764 | 22077 |
| ASV43077.1 | KY883647_p40 | hypothetical protein | phrog_8869 | unknown function | unknown function | -1 | 34340 | 35146 |
| ASV43055.1 | KY883647_p18 | hypothetical protein | phrog_2378 | unknown function | unknown function | 1 | 11783 | 12250 |
| ASV43069.1 | KY883647_p32 | hypothetical protein | phrog_8824 | unknown function | unknown function | -1 | 25506 | 26678 |
| ASV43040.1 | KY883647_p3 | hypothetical protein | phrog_12668 | unknown function | unknown function | 1 | 3023 | 3292 |
| ASV43067.1 | KY883647_p30 | tail fibers protein | phrog_4440 | tail fiber protein | tail | -1 | 22079 | 23152 |
| ASV43081.1 | KY883647_p44 | hypothetical protein | phrog_5977 | unknown function | unknown function | -1 | 37531 | 37788 |
| ASV43082.1 | KY883647_p45 | hypothetical protein | phrog_9429 | unknown function | unknown function | -1 | 37801 | 38028 |
| ASV43080.1 | KY883647_p43 | hypothetical protein | phrog_3742 | unknown function | unknown function | -1 | 36675 | 37526 |
| ASV43050.1 | KY883647_p13 | hypothetical protein | phrog_3392 | unknown function | unknown function | 1 | 8120 | 8530 |
| ASV43065.1 | KY883647_p28 | hypothetical protein | phrog_474 | phosphofructokinase | other | 1 | 20364 | 20738 |
| ASV43038.1 | KY883647_p1 | hypothetical protein | phrog_8823 | terminase small subunit | head and packaging | -1 | 1841 | 2341 |
| ASV43072.1 | KY883647_p35 | exonuclease SbcC | phrog_376 | tail protein | tail | -1 | 29160 | 30944 |
| ASV43053.1 | KY883647_p16 | hypothetical protein | phrog_9940 | unknown function | unknown function | 1 | 9833 | 10186 |
| ASV43062.1 | KY883647_p25 | hydrolase | phrog_7076 | dATP triphosphohydrolase | DNA, RNA and nucleotide metabolism | 1 | 19247 | 19759 |
| ASV43083.1 | KY883647_p46 | hypothetical protein | phrog_332 | head-tail adaptor | connector | -1 | 38028 | 39635 |
| ASV43070.1 | KY883647_p33 | hypothetical protein | phrog_9153 | unknown function | unknown function | -1 | 26678 | 28762 |
| ASV43059.1 | KY883647_p22 | integrase | phrog_1156 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 15622 | 17910 |
| ASV43060.1 | KY883647_p23 | adenylosuccinate synthetase | phrog_1211 | 2-aminooxy adenylosuccinate synthetase | DNA, RNA and nucleotide metabolism | 1 | 17952 | 18983 |