Genomic map of Vibrio phage JSF35 (KY883648)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY883648
Definition
Vibrio phage JSF35, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Chatterjeevirus; unclassified Chatterjeevirus.
DB of origin
NUCCORE
Length
38688
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
42.7
Number of singletons
1
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASV43098.1 KY883648_p15 hypothetical protein phrog_10848 unknown function unknown function 1 11108 11365
ASV43118.1 KY883648_p35 tail tubular protein B phrog_457 tail protein tail 1 23432 25816
ASV43099.1 KY883648_p16 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 11372 13408
ASV43086.1 KY883648_p3 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism 1 1866 4517
ASV43103.1 KY883648_p20 hypothetical protein phrog_14683 unknown function unknown function 1 14237 14407
ASV43090.1 KY883648_p7 host RNA polymerase inhibitory protein phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism 1 6971 7144
ASV43116.1 KY883648_p33 capsid and scaffold protein phrog_267 major head protein head and packaging 1 21637 22761
ASV43091.1 KY883648_p8 hypothetical protein phrog_11648 unknown function unknown function 1 7315 7467
ASV43126.1 KY883648_p43 DNA packaging protein A phrog_1351 terminase small subunit head and packaging 1 35299 35532
ASV43108.1 KY883648_p25 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism 1 16660 17112
ASV43085.1 KY883648_p2 hypothetical protein phrog_13599 unknown function unknown function 1 1272 1472
ASV43131.1 KY883648_p48 hypothetical protein singleton unknown function unknown function -1 38437 38577
ASV43130.1 KY883648_p47 hypothetical protein phrog_19284 unknown function unknown function 1 37973 38104
ASV43122.1 KY883648_p39 protein inside capsid C phrog_1339 internal virion protein head and packaging 1 27692 29869
ASV43125.1 KY883648_p42 class II holin phrog_920 holin lysis 1 35106 35330
ASV43119.1 KY883648_p36 proton/sodium-glutamate symport protein phrog_761 thymidylate kinase other 1 25904 26536
ASV43111.1 KY883648_p28 hypothetical protein phrog_1391 unknown function unknown function 1 17979 18230
ASV43107.1 KY883648_p24 ssDNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism 1 15989 16660
ASV43094.1 KY883648_p11 hypothetical protein phrog_11152 unknown function unknown function 1 8302 8499
ASV43127.1 KY883648_p44 hypothetical protein phrog_4712 holin lysis 1 35551 35694
ASV43101.1 KY883648_p18 hypothetical protein phrog_10513 unknown function unknown function 1 13713 14105
ASV43115.1 KY883648_p32 capsid and scaffold protein phrog_1052 head assembly head and packaging 1 20658 21518
ASV43106.1 KY883648_p23 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 15022 15897
ASV43088.1 KY883648_p5 hypothetical protein phrog_11350 unknown function unknown function 1 5908 6234
ASV43102.1 KY883648_p19 hypothetical protein phrog_11673 unknown function unknown function 1 14092 14283
ASV43089.1 KY883648_p6 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other 1 6246 6929
ASV43128.1 KY883648_p45 hypothetical protein phrog_10167 unknown function unknown function 1 35694 35891
ASV43105.1 KY883648_p22 nucleotide reductase subunit C phrog_2294 ribonucleotide reductase DNA, RNA and nucleotide metabolism 1 14616 15029
ASV43110.1 KY883648_p27 hypothetical protein phrog_1447 unknown function unknown function 1 17682 17963
ASV43084.1 KY883648_p1 hypothetical protein phrog_11474 unknown function unknown function 1 1084 1275
ASV43113.1 KY883648_p30 host specificity protein B phrog_10099 unknown function unknown function 1 18673 18963
ASV43117.1 KY883648_p34 tail tubular protein A phrog_446 tail protein tail 1 22827 23420
ASV43123.1 KY883648_p40 protein inside capsid D phrog_342 internal virion protein with endolysin domain head and packaging 1 29882 33265
ASV43092.1 KY883648_p9 hypothetical protein phrog_10197 unknown function unknown function 1 7506 7787
ASV43112.1 KY883648_p29 host specificity protein A phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover 1 18266 18673
ASV43095.1 KY883648_p12 primase/helicase protein phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism 1 8481 10202
ASV43129.1 KY883648_p46 DNA packaging protein phrog_38 terminase large subunit head and packaging 1 35966 37726
ASV43104.1 KY883648_p21 HNS binding protein phrog_1334 unknown function unknown function 1 14419 14616
ASV43100.1 KY883648_p17 hypothetical protein phrog_10985 unknown function unknown function 1 13419 13583
ASV43087.1 KY883648_p4 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 4644 5624
ASV43120.1 KY883648_p37 protein inside capsid A phrog_308 internal virion protein head and packaging 1 26529 27047
ASV43109.1 KY883648_p26 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis 1 17112 17546
ASV43124.1 KY883648_p41 tail fibers protein phrog_6256 tail fiber protein tail 1 33345 35084
ASV43097.1 KY883648_p14 hypothetical protein phrog_10620 unknown function unknown function 1 10663 11121
ASV43121.1 KY883648_p38 protein inside capsid B phrog_805 internal virion protein head and packaging 1 27040 27624
ASV43096.1 KY883648_p13 hypothetical protein phrog_10688 unknown function unknown function 1 10263 10577
ASV43093.1 KY883648_p10 hypothetical protein phrog_5138 unknown function unknown function 1 7803 8198
ASV43114.1 KY883648_p31 head-to-tail joining protein phrog_449 head-tail adaptor connector 1 18981 20579