| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY883648 |
Definition |
Vibrio phage JSF35, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Chatterjeevirus; unclassified Chatterjeevirus. |
DB of origin |
NUCCORE |
Length |
38688 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
48 |
%GC |
42.7 |
Number of singletons |
1 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASV43098.1 | KY883648_p15 | hypothetical protein | phrog_10848 | unknown function | unknown function | 1 | 11108 | 11365 |
| ASV43118.1 | KY883648_p35 | tail tubular protein B | phrog_457 | tail protein | tail | 1 | 23432 | 25816 |
| ASV43099.1 | KY883648_p16 | DNA polymerase | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 11372 | 13408 |
| ASV43086.1 | KY883648_p3 | DNA-directed RNA polymerase | phrog_414 | RNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 1866 | 4517 |
| ASV43103.1 | KY883648_p20 | hypothetical protein | phrog_14683 | unknown function | unknown function | 1 | 14237 | 14407 |
| ASV43090.1 | KY883648_p7 | host RNA polymerase inhibitory protein | phrog_1307 | RNA polymerase inhibitor | DNA, RNA and nucleotide metabolism | 1 | 6971 | 7144 |
| ASV43116.1 | KY883648_p33 | capsid and scaffold protein | phrog_267 | major head protein | head and packaging | 1 | 21637 | 22761 |
| ASV43091.1 | KY883648_p8 | hypothetical protein | phrog_11648 | unknown function | unknown function | 1 | 7315 | 7467 |
| ASV43126.1 | KY883648_p43 | DNA packaging protein A | phrog_1351 | terminase small subunit | head and packaging | 1 | 35299 | 35532 |
| ASV43108.1 | KY883648_p25 | endonuclease | phrog_945 | endonuclease | DNA, RNA and nucleotide metabolism | 1 | 16660 | 17112 |
| ASV43085.1 | KY883648_p2 | hypothetical protein | phrog_13599 | unknown function | unknown function | 1 | 1272 | 1472 |
| ASV43131.1 | KY883648_p48 | hypothetical protein | singleton | unknown function | unknown function | -1 | 38437 | 38577 |
| ASV43130.1 | KY883648_p47 | hypothetical protein | phrog_19284 | unknown function | unknown function | 1 | 37973 | 38104 |
| ASV43122.1 | KY883648_p39 | protein inside capsid C | phrog_1339 | internal virion protein | head and packaging | 1 | 27692 | 29869 |
| ASV43125.1 | KY883648_p42 | class II holin | phrog_920 | holin | lysis | 1 | 35106 | 35330 |
| ASV43119.1 | KY883648_p36 | proton/sodium-glutamate symport protein | phrog_761 | thymidylate kinase | other | 1 | 25904 | 26536 |
| ASV43111.1 | KY883648_p28 | hypothetical protein | phrog_1391 | unknown function | unknown function | 1 | 17979 | 18230 |
| ASV43107.1 | KY883648_p24 | ssDNA-binding protein | phrog_112 | Gp2.5-like ssDNA binding protein and ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 15989 | 16660 |
| ASV43094.1 | KY883648_p11 | hypothetical protein | phrog_11152 | unknown function | unknown function | 1 | 8302 | 8499 |
| ASV43127.1 | KY883648_p44 | hypothetical protein | phrog_4712 | holin | lysis | 1 | 35551 | 35694 |
| ASV43101.1 | KY883648_p18 | hypothetical protein | phrog_10513 | unknown function | unknown function | 1 | 13713 | 14105 |
| ASV43115.1 | KY883648_p32 | capsid and scaffold protein | phrog_1052 | head assembly | head and packaging | 1 | 20658 | 21518 |
| ASV43106.1 | KY883648_p23 | exonuclease | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 15022 | 15897 |
| ASV43088.1 | KY883648_p5 | hypothetical protein | phrog_11350 | unknown function | unknown function | 1 | 5908 | 6234 |
| ASV43102.1 | KY883648_p19 | hypothetical protein | phrog_11673 | unknown function | unknown function | 1 | 14092 | 14283 |
| ASV43089.1 | KY883648_p6 | hypothetical protein | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 6246 | 6929 |
| ASV43128.1 | KY883648_p45 | hypothetical protein | phrog_10167 | unknown function | unknown function | 1 | 35694 | 35891 |
| ASV43105.1 | KY883648_p22 | nucleotide reductase subunit C | phrog_2294 | ribonucleotide reductase | DNA, RNA and nucleotide metabolism | 1 | 14616 | 15029 |
| ASV43110.1 | KY883648_p27 | hypothetical protein | phrog_1447 | unknown function | unknown function | 1 | 17682 | 17963 |
| ASV43084.1 | KY883648_p1 | hypothetical protein | phrog_11474 | unknown function | unknown function | 1 | 1084 | 1275 |
| ASV43113.1 | KY883648_p30 | host specificity protein B | phrog_10099 | unknown function | unknown function | 1 | 18673 | 18963 |
| ASV43117.1 | KY883648_p34 | tail tubular protein A | phrog_446 | tail protein | tail | 1 | 22827 | 23420 |
| ASV43123.1 | KY883648_p40 | protein inside capsid D | phrog_342 | internal virion protein with endolysin domain | head and packaging | 1 | 29882 | 33265 |
| ASV43092.1 | KY883648_p9 | hypothetical protein | phrog_10197 | unknown function | unknown function | 1 | 7506 | 7787 |
| ASV43112.1 | KY883648_p29 | host specificity protein A | phrog_2746 | host range and adsorption protein | moron, auxiliary metabolic gene and host takeover | 1 | 18266 | 18673 |
| ASV43095.1 | KY883648_p12 | primase/helicase protein | phrog_239 | DNA primase/helicase | DNA, RNA and nucleotide metabolism | 1 | 8481 | 10202 |
| ASV43129.1 | KY883648_p46 | DNA packaging protein | phrog_38 | terminase large subunit | head and packaging | 1 | 35966 | 37726 |
| ASV43104.1 | KY883648_p21 | HNS binding protein | phrog_1334 | unknown function | unknown function | 1 | 14419 | 14616 |
| ASV43100.1 | KY883648_p17 | hypothetical protein | phrog_10985 | unknown function | unknown function | 1 | 13419 | 13583 |
| ASV43087.1 | KY883648_p4 | DNA ligase | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 4644 | 5624 |
| ASV43120.1 | KY883648_p37 | protein inside capsid A | phrog_308 | internal virion protein | head and packaging | 1 | 26529 | 27047 |
| ASV43109.1 | KY883648_p26 | N-acetylmuramoyl-L-alanine amidase | phrog_822 | amidase | lysis | 1 | 17112 | 17546 |
| ASV43124.1 | KY883648_p41 | tail fibers protein | phrog_6256 | tail fiber protein | tail | 1 | 33345 | 35084 |
| ASV43097.1 | KY883648_p14 | hypothetical protein | phrog_10620 | unknown function | unknown function | 1 | 10663 | 11121 |
| ASV43121.1 | KY883648_p38 | protein inside capsid B | phrog_805 | internal virion protein | head and packaging | 1 | 27040 | 27624 |
| ASV43096.1 | KY883648_p13 | hypothetical protein | phrog_10688 | unknown function | unknown function | 1 | 10263 | 10577 |
| ASV43093.1 | KY883648_p10 | hypothetical protein | phrog_5138 | unknown function | unknown function | 1 | 7803 | 8198 |
| ASV43114.1 | KY883648_p31 | head-to-tail joining protein | phrog_449 | head-tail adaptor | connector | 1 | 18981 | 20579 |