Genomic map of Vibrio phage JSF20 (KY883651)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY883651
Definition
Vibrio phage JSF20, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Studiervirinae; Chatterjeevirus; unclassified Chatterjeevirus.
DB of origin
NUCCORE
Length
39378
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
48
%GC
42.72
Number of singletons
0
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASV43251.1 KY883651_p26 nucleotide reductase subunit C phrog_2294 ribonucleotide reductase DNA, RNA and nucleotide metabolism -1 24121 24534
ASV43261.1 KY883651_p36 primase/helicase protein phrog_239 DNA primase/helicase DNA, RNA and nucleotide metabolism -1 28948 30669
ASV43232.1 KY883651_p7 tail fibers protein phrog_6256 tail fiber protein tail -1 4062 5801
ASV43233.1 KY883651_p8 protein inside capsid D phrog_342 internal virion protein with endolysin domain head and packaging -1 5881 9264
ASV43259.1 KY883651_p34 hypothetical protein phrog_10620 unknown function unknown function -1 28029 28487
ASV43255.1 KY883651_p30 hypothetical protein phrog_10513 unknown function unknown function -1 25045 25437
ASV43236.1 KY883651_p11 protein inside capsid A phrog_308 internal virion protein head and packaging -1 12099 12617
ASV43245.1 KY883651_p20 hypothetical protein phrog_1391 unknown function unknown function -1 20920 21171
ASV43252.1 KY883651_p27 HNS binding protein phrog_1334 unknown function unknown function -1 24534 24731
ASV43248.1 KY883651_p23 endonuclease phrog_945 endonuclease DNA, RNA and nucleotide metabolism -1 22038 22490
ASV43227.1 KY883651_p2 hypothetical protein phrog_10167 unknown function unknown function -1 2694 2891
ASV43247.1 KY883651_p22 N-acetylmuramoyl-L-alanine amidase phrog_822 amidase lysis -1 21604 22038
ASV43263.1 KY883651_p38 hypothetical protein phrog_5138 unknown function unknown function -1 30953 31348
ASV43249.1 KY883651_p24 ssDNA-binding protein phrog_112 Gp2.5-like ssDNA binding protein and ssDNA annealing protein DNA, RNA and nucleotide metabolism -1 22490 23161
ASV43254.1 KY883651_p29 hypothetical protein phrog_11673 unknown function unknown function -1 24867 25058
ASV43231.1 KY883651_p6 class II holin phrog_920 holin lysis -1 3846 4040
ASV43240.1 KY883651_p15 capsid and scaffold protein phrog_267 major head protein head and packaging -1 16385 17512
ASV43273.1 KY883651_p48 S-adenosyl-L-methionine hydrolase phrog_2226 SAM-dependent methyltransferase other -1 38247 38678
ASV43250.1 KY883651_p25 exonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 23253 24128
ASV43234.1 KY883651_p9 protein inside capsid C phrog_1339 internal virion protein head and packaging -1 9277 11454
ASV43267.1 KY883651_p42 hypothetical protein phrog_139 deoxynucleoside monophosphate kinase other -1 32222 32905
ASV43241.1 KY883651_p16 capsid and scaffold protein phrog_1052 head assembly head and packaging -1 17631 18491
ASV43242.1 KY883651_p17 head-to-tail joining protein phrog_449 head-tail adaptor connector -1 18571 20169
ASV43266.1 KY883651_p41 host RNA polymerase inhibitory protein phrog_1307 RNA polymerase inhibitor DNA, RNA and nucleotide metabolism -1 32007 32180
ASV43230.1 KY883651_p5 hypothetical protein phrog_12315 unknown function unknown function -1 3298 3729
ASV43253.1 KY883651_p28 hypothetical protein phrog_14683 unknown function unknown function -1 24743 24913
ASV43256.1 KY883651_p31 hypothetical protein phrog_10985 unknown function unknown function -1 25567 25731
ASV43270.1 KY883651_p45 DNA-directed RNA polymerase phrog_414 RNA polymerase DNA, RNA and nucleotide metabolism -1 34693 37344
ASV43257.1 KY883651_p32 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 25742 27778
ASV43269.1 KY883651_p44 DNA ligase phrog_114 ATP-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 33527 34507
ASV43260.1 KY883651_p35 hypothetical protein phrog_10688 unknown function unknown function -1 28573 28887
ASV43229.1 KY883651_p4 DNA packaging protein A phrog_1351 terminase small subunit head and packaging -1 3053 3286
ASV43268.1 KY883651_p43 hypothetical protein phrog_11350 unknown function unknown function -1 32917 33243
ASV43262.1 KY883651_p37 hypothetical protein phrog_11152 unknown function unknown function -1 30651 30848
ASV43237.1 KY883651_p12 proton/sodium-glutamate symport protein phrog_761 thymidylate kinase other -1 12610 13242
ASV43246.1 KY883651_p21 hypothetical protein phrog_1447 unknown function unknown function -1 21187 21468
ASV43265.1 KY883651_p40 hypothetical protein phrog_11648 unknown function unknown function -1 31684 31836
ASV43226.1 KY883651_p1 DNA packaging protein phrog_38 terminase large subunit head and packaging -1 859 2619
ASV43239.1 KY883651_p14 tail tubular protein A phrog_446 tail protein tail -1 15726 16319
ASV43238.1 KY883651_p13 tail tubular protein B phrog_457 tail protein tail -1 13330 15714
ASV43258.1 KY883651_p33 hypothetical protein phrog_10848 unknown function unknown function -1 27785 28042
ASV43272.1 KY883651_p47 hypothetical protein phrog_11474 unknown function unknown function -1 37935 38126
ASV43243.1 KY883651_p18 host specificity protein B phrog_10099 unknown function unknown function -1 20187 20477
ASV43228.1 KY883651_p3 hypothetical protein phrog_4712 holin lysis -1 2891 3034
ASV43264.1 KY883651_p39 hypothetical protein phrog_10197 unknown function unknown function -1 31364 31645
ASV43271.1 KY883651_p46 hypothetical protein phrog_13599 unknown function unknown function -1 37738 37938
ASV43235.1 KY883651_p10 protein inside capsid B phrog_805 internal virion protein head and packaging -1 11522 12106
ASV43244.1 KY883651_p19 host specificity protein A phrog_2746 host range and adsorption protein moron, auxiliary metabolic gene and host takeover -1 20477 20884