functional categories (each PHROG annotation is associated to a category) | Notes | ||
head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
tail | lysis | other | - Scroll to zoom |
unknown function | - Click on a protein to see its PHROG |
Locus |
KY883654 |
Definition |
Vibrio phage JSF10, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Ermolyevavirinae; Jesfedecavirus; Vibrio virus JSF10. |
DB of origin |
NUCCORE |
Length |
111671 |
Host Name |
Vibrio cholerae |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
149 |
%GC |
42.7 |
Number of singletons |
14 |
Number of paralogs |
1 |
NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
---|---|---|---|---|---|---|---|---|
ASV43378.1 | KY883654_p9 | hypothetical protein | phrog_464 | unknown function | unknown function | -1 | 5433 | 5696 |
ASV43468.1 | KY883654_p99 | hypothetical protein | phrog_313 | Tail assembly chaperone | tail | -1 | 74402 | 74836 |
ASV43406.1 | KY883654_p37 | hypothetical protein | phrog_13267 | unknown function | unknown function | -1 | 20403 | 20558 |
ASV43487.1 | KY883654_p118 | hypothetical protein | phrog_22349 | unknown function | unknown function | 1 | 91960 | 92319 |
ASV43427.1 | KY883654_p58 | ribonucleotide reductase of class III (anaerobic), large subunit | phrog_487 | NrdD-like anaerobic ribonucleotide reductase large subunit | moron, auxiliary metabolic gene and host takeover | -1 | 32056 | 33216 |
ASV43385.1 | KY883654_p16 | hypothetical protein | phrog_34870 | unknown function | unknown function | -1 | 8796 | 8999 |
ASV43462.1 | KY883654_p93 | hypothetical protein | phrog_3890 | straight fibre tail protein | tail | -1 | 64253 | 66481 |
ASV43446.1 | KY883654_p77 | hypothetical protein | singleton | unknown function | unknown function | 1 | 49045 | 49917 |
ASV43437.1 | KY883654_p68 | DNA ligase | phrog_3359 | NAD-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 41092 | 42054 |
ASV43398.1 | KY883654_p29 | hypothetical protein | phrog_17966 | unknown function | unknown function | -1 | 14488 | 14679 |
ASV43479.1 | KY883654_p110 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 83174 | 84496 |
ASV43466.1 | KY883654_p97 | hypothetical protein | phrog_15693 | unknown function | unknown function | -1 | 73201 | 73956 |
ASV43421.1 | KY883654_p52 | ribonucleotide reductase of class Ia (aerobic), alpha subunit | phrog_84 | ribonucleoside-diphosphate reductase large subunit | DNA, RNA and nucleotide metabolism | -1 | 26742 | 28439 |
ASV43482.1 | KY883654_p113 | hypothetical protein | phrog_415 | polynucleotide kinase | other | -1 | 87312 | 87941 |
ASV43400.1 | KY883654_p31 | hypothetical protein | phrog_1460 | tRNA amidotransferase | DNA, RNA and nucleotide metabolism | -1 | 15192 | 15596 |
ASV43512.1 | KY883654_p143 | hypothetical protein | phrog_2071 | ATPase | other | -1 | 107559 | 107975 |
ASV43417.1 | KY883654_p48 | hypothetical protein | phrog_37814 | unknown function | unknown function | -1 | 24756 | 24971 |
ASV43440.1 | KY883654_p71 | DNA ligase | phrog_3498 | NAD-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 42977 | 43768 |
ASV43372.1 | KY883654_p3 | hypothetical protein | phrog_624 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 1122 | 2162 |
ASV43448.1 | KY883654_p79 | hypothetical protein | phrog_4386 | unknown function | unknown function | 1 | 50939 | 51370 |
ASV43472.1 | KY883654_p103 | hypothetical protein | phrog_3725 | tail completion or Neck1 protein | connector | -1 | 77698 | 78459 |
ASV43454.1 | KY883654_p85 | DNA double-strand break repair Rad50 ATPase | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 55404 | 57275 |
ASV43426.1 | KY883654_p57 | hypothetical protein | phrog_28742 | unknown function | unknown function | -1 | 31371 | 31868 |
ASV43490.1 | KY883654_p121 | hypothetical protein | phrog_11598 | unknown function | unknown function | 1 | 93256 | 93639 |
ASV43457.1 | KY883654_p88 | deoxyuridine 5'-triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 58627 | 59079 |
ASV43488.1 | KY883654_p119 | hypothetical protein | phrog_23400 | unknown function | unknown function | 1 | 92334 | 92774 |
ASV43418.1 | KY883654_p49 | hypothetical protein | phrog_1017 | unknown function | unknown function | -1 | 24946 | 25386 |
ASV43389.1 | KY883654_p20 | hypothetical protein | phrog_9720 | unknown function | unknown function | -1 | 10566 | 10817 |
ASV43498.1 | KY883654_p129 | hypothetical protein | phrog_19721 | unknown function | unknown function | -1 | 98435 | 98629 |
ASV43429.1 | KY883654_p60 | DNA primase C | phrog_3712 | replication origin binding | DNA, RNA and nucleotide metabolism | 1 | 34909 | 37701 |
ASV43436.1 | KY883654_p67 | hypothetical protein | phrog_16618 | unknown function | unknown function | 1 | 40474 | 40824 |
ASV43473.1 | KY883654_p104 | hypothetical protein | phrog_442 | head-tail adaptor | connector | -1 | 78461 | 79003 |
ASV43402.1 | KY883654_p33 | hypothetical protein | phrog_2855 | unknown function | unknown function | -1 | 16388 | 16714 |
ASV43496.1 | KY883654_p127 | hypothetical protein | singleton | unknown function | unknown function | -1 | 97773 | 98033 |
ASV43407.1 | KY883654_p38 | hypothetical protein | phrog_15472 | unknown function | unknown function | -1 | 20910 | 21203 |
ASV43433.1 | KY883654_p64 | hypothetical protein | phrog_1725 | DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39377 | 39799 |
ASV43370.1 | KY883654_p1 | hypothetical protein | phrog_19681 | unknown function | unknown function | -1 | 552 | 734 |
ASV43450.1 | KY883654_p81 | hypothetical protein | phrog_4258 | unknown function | unknown function | 1 | 52883 | 53200 |
ASV43461.1 | KY883654_p92 | hypothetical protein | phrog_15373 | L-shaped tail fiber protein assembly | tail | -1 | 63465 | 64247 |
ASV43422.1 | KY883654_p53 | ribonucleotide reductase of class Ia (aerobic), beta subunit | phrog_86 | ribonucleoside diphosphate reductase small subunit | DNA, RNA and nucleotide metabolism | -1 | 28432 | 29475 |
ASV43491.1 | KY883654_p122 | hypothetical protein | phrog_23543 | unknown function | unknown function | 1 | 93639 | 93842 |
ASV43442.1 | KY883654_p73 | hypothetical protein | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 44584 | 46008 |
ASV43409.1 | KY883654_p40 | hypothetical protein | phrog_1040 | peptidase HslV family | other | -1 | 21471 | 21992 |
ASV43464.1 | KY883654_p95 | hypothetical protein | phrog_1302 | distal tail protein | tail | -1 | 69330 | 69950 |
ASV43395.1 | KY883654_p26 | thymidylate synthase | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | -1 | 12511 | 13374 |
ASV43453.1 | KY883654_p84 | recombinase | phrog_100 | SbcD-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 54527 | 55414 |
ASV43517.1 | KY883654_p148 | hypothetical protein | singleton | unknown function | unknown function | -1 | 111222 | 111335 |
ASV43383.1 | KY883654_p14 | hypothetical protein | phrog_7810 | unknown function | unknown function | -1 | 8042 | 8374 |
ASV43478.1 | KY883654_p109 | hypothetical protein | phrog_3497 | unknown function | unknown function | -1 | 82534 | 83016 |
ASV43411.1 | KY883654_p42 | hypothetical protein | phrog_4586 | unknown function | unknown function | -1 | 22675 | 22911 |
ASV43443.1 | KY883654_p74 | DNA primase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 45995 | 46885 |
ASV43449.1 | KY883654_p80 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 51367 | 52725 |
ASV43423.1 | KY883654_p54 | hypothetical protein | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | -1 | 29465 | 29695 |
ASV43455.1 | KY883654_p86 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 57268 | 57747 |
ASV43377.1 | KY883654_p8 | hypothetical protein | phrog_739 | Rz-like spanin | lysis | -1 | 5090 | 5401 |
ASV43393.1 | KY883654_p24 | hypothetical protein | phrog_33265 | unknown function | unknown function | -1 | 11744 | 11983 |
ASV43493.1 | KY883654_p124 | hypothetical protein | phrog_16854 | unknown function | unknown function | -1 | 95824 | 96186 |
ASV43399.1 | KY883654_p30 | hypothetical protein | phrog_4852 | unknown function | unknown function | -1 | 15059 | 15205 |
ASV43451.1 | KY883654_p82 | hypothetical protein | phrog_1607 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 53211 | 54014 |
ASV43391.1 | KY883654_p22 | hypothetical protein | singleton | unknown function | unknown function | -1 | 11186 | 11398 |
ASV43401.1 | KY883654_p32 | hypothetical protein | phrog_902 | unknown function | unknown function | -1 | 15938 | 16198 |
ASV43404.1 | KY883654_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17256 | 17399 |
ASV43515.1 | KY883654_p146 | hypothetical protein | phrog_19380 | unknown function | unknown function | -1 | 109835 | 110779 |
ASV43435.1 | KY883654_p66 | hypothetical protein | phrog_4053 | transcriptional regulator | transcription regulation | 1 | 40136 | 40441 |
ASV43438.1 | KY883654_p69 | hypothetical protein | phrog_13916 | DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 42056 | 42277 |
ASV43516.1 | KY883654_p147 | hypothetical protein | phrog_17052 | unknown function | unknown function | -1 | 110835 | 111212 |
ASV43477.1 | KY883654_p108 | portal (connector) protein | phrog_12 | portal protein | head and packaging | -1 | 81310 | 82530 |
ASV43458.1 | KY883654_p89 | hypothetical protein | singleton | unknown function | unknown function | -1 | 59317 | 59679 |
ASV43514.1 | KY883654_p145 | serine/threonine protein phosphatase | phrog_246 | NinI-like serine-threonine phosphatase | other | -1 | 109009 | 109752 |
ASV43513.1 | KY883654_p144 | RNA ligase | phrog_562 | RNA ligase and tail fiber protein attachment catalyst | tail | -1 | 108032 | 108934 |
ASV43485.1 | KY883654_p116 | A2 protein | phrog_1725 | DNA binding protein | DNA, RNA and nucleotide metabolism | -1 | 90247 | 90738 |
ASV43397.1 | KY883654_p28 | hypothetical protein | phrog_23579 | unknown function | unknown function | -1 | 13982 | 14206 |
ASV43439.1 | KY883654_p70 | hypothetical protein | phrog_768 | DprA-like DNA recombination-mediator protein | DNA, RNA and nucleotide metabolism | 1 | 42316 | 42888 |
ASV43414.1 | KY883654_p45 | hypothetical protein | phrog_15847 | unknown function | unknown function | -1 | 23564 | 23839 |
ASV43387.1 | KY883654_p18 | hypothetical protein | phrog_37792 | unknown function | unknown function | -1 | 9908 | 10060 |
ASV43415.1 | KY883654_p46 | hypothetical protein | phrog_30352 | unknown function | unknown function | -1 | 23933 | 24205 |
ASV43403.1 | KY883654_p34 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17095 | 17253 |
ASV43504.1 | KY883654_p135 | hypothetical protein | phrog_28076 | unknown function | unknown function | -1 | 101451 | 101906 |
ASV43470.1 | KY883654_p101 | hypothetical protein | phrog_3575 | major tail protein | tail | -1 | 75723 | 77186 |
ASV43486.1 | KY883654_p117 | hypothetical protein | phrog_26987 | unknown function | unknown function | -1 | 90828 | 91124 |
ASV43396.1 | KY883654_p27 | hypothetical protein | phrog_37428 | unknown function | unknown function | -1 | 13701 | 13976 |
ASV43434.1 | KY883654_p65 | hypothetical protein | phrog_3696 | unknown function | unknown function | 1 | 39838 | 40152 |
ASV43456.1 | KY883654_p87 | DNA polymerase I | phrog_107 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 57744 | 58640 |
ASV43432.1 | KY883654_p63 | hypothetical protein | phrog_3611 | helicase | DNA, RNA and nucleotide metabolism | 1 | 38521 | 39363 |
ASV43452.1 | KY883654_p83 | hypothetical protein | phrog_15738 | unknown function | unknown function | 1 | 54070 | 54438 |
ASV43408.1 | KY883654_p39 | hypothetical protein | phrog_16144 | unknown function | unknown function | -1 | 21217 | 21414 |
ASV43489.1 | KY883654_p120 | hypothetical protein | phrog_11691 | unknown function | unknown function | 1 | 92876 | 93259 |
ASV43469.1 | KY883654_p100 | tail fibers protein | phrog_3889 | base plate tail tube protein | tail | -1 | 74833 | 75717 |
ASV43419.1 | KY883654_p50 | ATPase | phrog_170 | PhoH-like phosphate starvation-inducible | other | -1 | 25476 | 26129 |
ASV43509.1 | KY883654_p140 | hypothetical protein | phrog_3600 | antimicrobial peptide resistance and lipid A acylation protein PagP | moron, auxiliary metabolic gene and host takeover | -1 | 105927 | 106382 |
ASV43484.1 | KY883654_p115 | A1 protein | phrog_1745 | DNA transfer protein | other | -1 | 88397 | 90109 |
ASV43511.1 | KY883654_p142 | phosphohydrolase | phrog_547 | phosphoesterase | other | -1 | 106983 | 107552 |
ASV43467.1 | KY883654_p98 | hypothetical protein | phrog_3914 | tail assembly chaperone | tail | -1 | 74041 | 74313 |
ASV43373.1 | KY883654_p4 | GTP pyrophosphokinase | phrog_990 | metal-dependent phosphohydrolase | other | -1 | 2229 | 2693 |
ASV43459.1 | KY883654_p90 | hypothetical protein | singleton | unknown function | unknown function | -1 | 59690 | 60295 |
ASV43380.1 | KY883654_p11 | hypothetical protein | phrog_2586 | unknown function | unknown function | -1 | 5865 | 6314 |
ASV43425.1 | KY883654_p56 | ribonucleotide reductase of class III (anaerobic), large subunit | phrog_4218 | anaerobic ribonucleoside reductase large subunit | DNA, RNA and nucleotide metabolism | -1 | 30199 | 31245 |
ASV43416.1 | KY883654_p47 | ribonuclease HI | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | -1 | 24287 | 24763 |
ASV43392.1 | KY883654_p23 | hypothetical protein | phrog_10957 | unknown function | unknown function | -1 | 11460 | 11747 |
ASV43501.1 | KY883654_p132 | hypothetical protein | phrog_1383 | virion structural protein | head and packaging | -1 | 99388 | 99951 |
ASV43428.1 | KY883654_p59 | hypothetical protein | phrog_38658 | unknown function | unknown function | 1 | 33478 | 33807 |
ASV43505.1 | KY883654_p136 | hypothetical protein | phrog_36064 | unknown function | unknown function | -1 | 101921 | 102433 |
ASV43476.1 | KY883654_p107 | hypothetical protein | phrog_16166 | unknown function | unknown function | -1 | 81065 | 81313 |
ASV43465.1 | KY883654_p96 | tail length tape-measure protein | phrog_3779 | tail length tape measure protein | tail | -1 | 70114 | 73188 |
ASV43376.1 | KY883654_p7 | deoxynucleotide monophosphate kinase | phrog_139 | deoxynucleoside monophosphate kinase | other | -1 | 4159 | 4812 |
ASV43381.1 | KY883654_p12 | hypothetical protein | singleton | unknown function | unknown function | -1 | 6396 | 6785 |
ASV43447.1 | KY883654_p78 | DNA polymerase I | singleton | unknown function | unknown function | 1 | 50307 | 50756 |
ASV43413.1 | KY883654_p44 | hypothetical protein | phrog_38644 | unknown function | unknown function | -1 | 23355 | 23564 |
ASV43497.1 | KY883654_p128 | hypothetical protein | phrog_35509 | unknown function | unknown function | -1 | 98187 | 98426 |
ASV43510.1 | KY883654_p141 | hypothetical protein | phrog_37195 | unknown function | unknown function | -1 | 106400 | 106978 |
ASV43481.1 | KY883654_p112 | hypothetical protein | phrog_16456 | unknown function | unknown function | 1 | 85119 | 86993 |
ASV43382.1 | KY883654_p13 | hypothetical protein | phrog_1491 | tail fiber protein | tail | -1 | 7234 | 7869 |
ASV43508.1 | KY883654_p139 | ribose-phosphate pyrophosphokinase | phrog_619 | ribose-phosphate pyrophosphokinase | other | -1 | 104955 | 105854 |
ASV43390.1 | KY883654_p21 | hypothetical protein | phrog_36667 | unknown function | unknown function | -1 | 10819 | 11184 |
ASV43374.1 | KY883654_p5 | hypothetical protein | phrog_894 | endolysin | lysis | -1 | 2781 | 3164 |
ASV43441.1 | KY883654_p72 | hypothetical protein | phrog_323 | transcriptional regulator, D5-like | transcription regulation | 1 | 43761 | 44528 |
ASV43394.1 | KY883654_p25 | dihydrofolate reductase | phrog_316 | dihydrofolate reductase | DNA, RNA and nucleotide metabolism | -1 | 12046 | 12501 |
ASV43379.1 | KY883654_p10 | hypothetical protein | phrog_34366 | unknown function | unknown function | -1 | 5686 | 5868 |
ASV43424.1 | KY883654_p55 | DNA modification methyltransferase | phrog_111 | DNA methyltransferase | other | -1 | 29699 | 30202 |
ASV43500.1 | KY883654_p131 | hypothetical protein | phrog_7819 | tail length tape measure protein | tail | -1 | 98861 | 99316 |
ASV43518.1 | KY883654_p149 | hypothetical protein | singleton | unknown function | unknown function | 1 | 111319 | 111435 |
ASV43502.1 | KY883654_p133 | hypothetical protein | phrog_2087 | unknown function | unknown function | -1 | 99948 | 101063 |
ASV43445.1 | KY883654_p76 | hypothetical protein | singleton | unknown function | unknown function | 1 | 48841 | 48954 |
ASV43492.1 | KY883654_p123 | hypothetical protein | phrog_15257 | unknown function | unknown function | 1 | 93845 | 94090 |
ASV43474.1 | KY883654_p105 | capsid and scaffold protein | phrog_10 | major head protein | head and packaging | -1 | 79054 | 80463 |
ASV43483.1 | KY883654_p114 | hypothetical protein | phrog_22145 | unknown function | unknown function | -1 | 88016 | 88291 |
ASV43507.1 | KY883654_p138 | hypothetical protein | phrog_335 | phosphatase | other | -1 | 104478 | 104951 |
ASV43386.1 | KY883654_p17 | hypothetical protein | phrog_36953 | unknown function | unknown function | -1 | 9377 | 9754 |
ASV43388.1 | KY883654_p19 | hypothetical protein | phrog_28053 | unknown function | unknown function | -1 | 10071 | 10343 |
ASV43495.1 | KY883654_p126 | hypothetical protein | singleton | unknown function | unknown function | -1 | 97273 | 97776 |
ASV43431.1 | KY883654_p62 | hypothetical protein | phrog_31186 | unknown function | unknown function | 1 | 38182 | 38475 |
ASV43503.1 | KY883654_p134 | hypothetical protein | phrog_29327 | unknown function | unknown function | -1 | 101101 | 101454 |
ASV43499.1 | KY883654_p130 | hypothetical protein | phrog_33362 | unknown function | unknown function | -1 | 98635 | 98871 |
ASV43410.1 | KY883654_p41 | exodeoxyribonuclease VIII | phrog_255 | exonuclease | DNA, RNA and nucleotide metabolism | -1 | 21989 | 22681 |
ASV43405.1 | KY883654_p36 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18001 | 18186 |
ASV43494.1 | KY883654_p125 | hypothetical protein | phrog_28145 | unknown function | unknown function | -1 | 96199 | 97257 |
ASV43371.1 | KY883654_p2 | hypothetical protein | phrog_3880 | unknown function | unknown function | -1 | 751 | 1053 |
ASV43480.1 | KY883654_p111 | hypothetical protein | phrog_3802 | terminase small subunit | head and packaging | -1 | 84496 | 84972 |
ASV43384.1 | KY883654_p15 | hypothetical protein | phrog_37007 | unknown function | unknown function | -1 | 8471 | 8803 |
ASV43420.1 | KY883654_p51 | ribonucleotide reductase of class III (anaerobic), activating protein | phrog_626 | anaerobic ribonucleotide reductase small subunit | DNA, RNA and nucleotide metabolism | -1 | 26148 | 26624 |
ASV43475.1 | KY883654_p106 | capsid and scaffold protein | phrog_80 | head maturation protease | head and packaging | -1 | 80467 | 81078 |
ASV43460.1 | KY883654_p91 | tail fiber protein | phrog_14064 | tail fiber protein | tail | -1 | 60327 | 63464 |
ASV43412.1 | KY883654_p43 | hypothetical protein | phrog_16554 | unknown function | unknown function | -1 | 23093 | 23377 |
ASV43430.1 | KY883654_p61 | hypothetical protein | phrog_36125 | unknown function | unknown function | 1 | 37688 | 37930 |
ASV43506.1 | KY883654_p137 | nicotinamide phosphoribosyltransferase | phrog_448 | nicotinamide phosphoribosyl transferase | other | -1 | 102802 | 104412 |
ASV43471.1 | KY883654_p102 | hypothetical protein | phrog_3907 | tail terminator | connector | -1 | 77210 | 77695 |
ASV43375.1 | KY883654_p6 | holin | phrog_860 | holin | lysis | -1 | 3164 | 3832 |
ASV43463.1 | KY883654_p94 | tail fibers protein | phrog_31 | central tail fiber J | tail | -1 | 66478 | 69333 |
ASV43444.1 | KY883654_p75 | DNA polymerase I | phrog_17 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 46975 | 48804 |