Genomic map of Vibrio phage JSF10 (KY883654)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY883654
Definition
Vibrio phage JSF10, complete genome.
Molecule type
DNA
Genome structure
circular
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Ermolyevavirinae; Jesfedecavirus; Vibrio virus JSF10.
DB of origin
NUCCORE
Length
111671
Host Name
Vibrio cholerae
Host domain
Bacteria
Is prophage?
undef
Number of proteins
149
%GC
42.7
Number of singletons
14
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASV43378.1 KY883654_p9 hypothetical protein phrog_464 unknown function unknown function -1 5433 5696
ASV43468.1 KY883654_p99 hypothetical protein phrog_313 Tail assembly chaperone tail -1 74402 74836
ASV43406.1 KY883654_p37 hypothetical protein phrog_13267 unknown function unknown function -1 20403 20558
ASV43487.1 KY883654_p118 hypothetical protein phrog_22349 unknown function unknown function 1 91960 92319
ASV43427.1 KY883654_p58 ribonucleotide reductase of class III (anaerobic), large subunit phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover -1 32056 33216
ASV43385.1 KY883654_p16 hypothetical protein phrog_34870 unknown function unknown function -1 8796 8999
ASV43462.1 KY883654_p93 hypothetical protein phrog_3890 straight fibre tail protein tail -1 64253 66481
ASV43446.1 KY883654_p77 hypothetical protein singleton unknown function unknown function 1 49045 49917
ASV43437.1 KY883654_p68 DNA ligase phrog_3359 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 41092 42054
ASV43398.1 KY883654_p29 hypothetical protein phrog_17966 unknown function unknown function -1 14488 14679
ASV43479.1 KY883654_p110 terminase large subunit phrog_2 terminase large subunit head and packaging -1 83174 84496
ASV43466.1 KY883654_p97 hypothetical protein phrog_15693 unknown function unknown function -1 73201 73956
ASV43421.1 KY883654_p52 ribonucleotide reductase of class Ia (aerobic), alpha subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism -1 26742 28439
ASV43482.1 KY883654_p113 hypothetical protein phrog_415 polynucleotide kinase other -1 87312 87941
ASV43400.1 KY883654_p31 hypothetical protein phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism -1 15192 15596
ASV43512.1 KY883654_p143 hypothetical protein phrog_2071 ATPase other -1 107559 107975
ASV43417.1 KY883654_p48 hypothetical protein phrog_37814 unknown function unknown function -1 24756 24971
ASV43440.1 KY883654_p71 DNA ligase phrog_3498 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism 1 42977 43768
ASV43372.1 KY883654_p3 hypothetical protein phrog_624 DNA binding protein DNA, RNA and nucleotide metabolism -1 1122 2162
ASV43448.1 KY883654_p79 hypothetical protein phrog_4386 unknown function unknown function 1 50939 51370
ASV43472.1 KY883654_p103 hypothetical protein phrog_3725 tail completion or Neck1 protein connector -1 77698 78459
ASV43454.1 KY883654_p85 DNA double-strand break repair Rad50 ATPase phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 55404 57275
ASV43426.1 KY883654_p57 hypothetical protein phrog_28742 unknown function unknown function -1 31371 31868
ASV43490.1 KY883654_p121 hypothetical protein phrog_11598 unknown function unknown function 1 93256 93639
ASV43457.1 KY883654_p88 deoxyuridine 5'-triphosphate nucleotidohydrolase phrog_135 dUTPase DNA, RNA and nucleotide metabolism 1 58627 59079
ASV43488.1 KY883654_p119 hypothetical protein phrog_23400 unknown function unknown function 1 92334 92774
ASV43418.1 KY883654_p49 hypothetical protein phrog_1017 unknown function unknown function -1 24946 25386
ASV43389.1 KY883654_p20 hypothetical protein phrog_9720 unknown function unknown function -1 10566 10817
ASV43498.1 KY883654_p129 hypothetical protein phrog_19721 unknown function unknown function -1 98435 98629
ASV43429.1 KY883654_p60 DNA primase C phrog_3712 replication origin binding DNA, RNA and nucleotide metabolism 1 34909 37701
ASV43436.1 KY883654_p67 hypothetical protein phrog_16618 unknown function unknown function 1 40474 40824
ASV43473.1 KY883654_p104 hypothetical protein phrog_442 head-tail adaptor connector -1 78461 79003
ASV43402.1 KY883654_p33 hypothetical protein phrog_2855 unknown function unknown function -1 16388 16714
ASV43496.1 KY883654_p127 hypothetical protein singleton unknown function unknown function -1 97773 98033
ASV43407.1 KY883654_p38 hypothetical protein phrog_15472 unknown function unknown function -1 20910 21203
ASV43433.1 KY883654_p64 hypothetical protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism 1 39377 39799
ASV43370.1 KY883654_p1 hypothetical protein phrog_19681 unknown function unknown function -1 552 734
ASV43450.1 KY883654_p81 hypothetical protein phrog_4258 unknown function unknown function 1 52883 53200
ASV43461.1 KY883654_p92 hypothetical protein phrog_15373 L-shaped tail fiber protein assembly tail -1 63465 64247
ASV43422.1 KY883654_p53 ribonucleotide reductase of class Ia (aerobic), beta subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism -1 28432 29475
ASV43491.1 KY883654_p122 hypothetical protein phrog_23543 unknown function unknown function 1 93639 93842
ASV43442.1 KY883654_p73 hypothetical protein phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 44584 46008
ASV43409.1 KY883654_p40 hypothetical protein phrog_1040 peptidase HslV family other -1 21471 21992
ASV43464.1 KY883654_p95 hypothetical protein phrog_1302 distal tail protein tail -1 69330 69950
ASV43395.1 KY883654_p26 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism -1 12511 13374
ASV43453.1 KY883654_p84 recombinase phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 54527 55414
ASV43517.1 KY883654_p148 hypothetical protein singleton unknown function unknown function -1 111222 111335
ASV43383.1 KY883654_p14 hypothetical protein phrog_7810 unknown function unknown function -1 8042 8374
ASV43478.1 KY883654_p109 hypothetical protein phrog_3497 unknown function unknown function -1 82534 83016
ASV43411.1 KY883654_p42 hypothetical protein phrog_4586 unknown function unknown function -1 22675 22911
ASV43443.1 KY883654_p74 DNA primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 45995 46885
ASV43449.1 KY883654_p80 DNA helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism 1 51367 52725
ASV43423.1 KY883654_p54 hypothetical protein phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism -1 29465 29695
ASV43455.1 KY883654_p86 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 57268 57747
ASV43377.1 KY883654_p8 hypothetical protein phrog_739 Rz-like spanin lysis -1 5090 5401
ASV43393.1 KY883654_p24 hypothetical protein phrog_33265 unknown function unknown function -1 11744 11983
ASV43493.1 KY883654_p124 hypothetical protein phrog_16854 unknown function unknown function -1 95824 96186
ASV43399.1 KY883654_p30 hypothetical protein phrog_4852 unknown function unknown function -1 15059 15205
ASV43451.1 KY883654_p82 hypothetical protein phrog_1607 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 53211 54014
ASV43391.1 KY883654_p22 hypothetical protein singleton unknown function unknown function -1 11186 11398
ASV43401.1 KY883654_p32 hypothetical protein phrog_902 unknown function unknown function -1 15938 16198
ASV43404.1 KY883654_p35 hypothetical protein singleton unknown function unknown function -1 17256 17399
ASV43515.1 KY883654_p146 hypothetical protein phrog_19380 unknown function unknown function -1 109835 110779
ASV43435.1 KY883654_p66 hypothetical protein phrog_4053 transcriptional regulator transcription regulation 1 40136 40441
ASV43438.1 KY883654_p69 hypothetical protein phrog_13916 DNA ligase DNA, RNA and nucleotide metabolism 1 42056 42277
ASV43516.1 KY883654_p147 hypothetical protein phrog_17052 unknown function unknown function -1 110835 111212
ASV43477.1 KY883654_p108 portal (connector) protein phrog_12 portal protein head and packaging -1 81310 82530
ASV43458.1 KY883654_p89 hypothetical protein singleton unknown function unknown function -1 59317 59679
ASV43514.1 KY883654_p145 serine/threonine protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other -1 109009 109752
ASV43513.1 KY883654_p144 RNA ligase phrog_562 RNA ligase and tail fiber protein attachment catalyst tail -1 108032 108934
ASV43485.1 KY883654_p116 A2 protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 90247 90738
ASV43397.1 KY883654_p28 hypothetical protein phrog_23579 unknown function unknown function -1 13982 14206
ASV43439.1 KY883654_p70 hypothetical protein phrog_768 DprA-like DNA recombination-mediator protein DNA, RNA and nucleotide metabolism 1 42316 42888
ASV43414.1 KY883654_p45 hypothetical protein phrog_15847 unknown function unknown function -1 23564 23839
ASV43387.1 KY883654_p18 hypothetical protein phrog_37792 unknown function unknown function -1 9908 10060
ASV43415.1 KY883654_p46 hypothetical protein phrog_30352 unknown function unknown function -1 23933 24205
ASV43403.1 KY883654_p34 hypothetical protein singleton unknown function unknown function -1 17095 17253
ASV43504.1 KY883654_p135 hypothetical protein phrog_28076 unknown function unknown function -1 101451 101906
ASV43470.1 KY883654_p101 hypothetical protein phrog_3575 major tail protein tail -1 75723 77186
ASV43486.1 KY883654_p117 hypothetical protein phrog_26987 unknown function unknown function -1 90828 91124
ASV43396.1 KY883654_p27 hypothetical protein phrog_37428 unknown function unknown function -1 13701 13976
ASV43434.1 KY883654_p65 hypothetical protein phrog_3696 unknown function unknown function 1 39838 40152
ASV43456.1 KY883654_p87 DNA polymerase I phrog_107 exonuclease DNA, RNA and nucleotide metabolism 1 57744 58640
ASV43432.1 KY883654_p63 hypothetical protein phrog_3611 helicase DNA, RNA and nucleotide metabolism 1 38521 39363
ASV43452.1 KY883654_p83 hypothetical protein phrog_15738 unknown function unknown function 1 54070 54438
ASV43408.1 KY883654_p39 hypothetical protein phrog_16144 unknown function unknown function -1 21217 21414
ASV43489.1 KY883654_p120 hypothetical protein phrog_11691 unknown function unknown function 1 92876 93259
ASV43469.1 KY883654_p100 tail fibers protein phrog_3889 base plate tail tube protein tail -1 74833 75717
ASV43419.1 KY883654_p50 ATPase phrog_170 PhoH-like phosphate starvation-inducible other -1 25476 26129
ASV43509.1 KY883654_p140 hypothetical protein phrog_3600 antimicrobial peptide resistance and lipid A acylation protein PagP moron, auxiliary metabolic gene and host takeover -1 105927 106382
ASV43484.1 KY883654_p115 A1 protein phrog_1745 DNA transfer protein other -1 88397 90109
ASV43511.1 KY883654_p142 phosphohydrolase phrog_547 phosphoesterase other -1 106983 107552
ASV43467.1 KY883654_p98 hypothetical protein phrog_3914 tail assembly chaperone tail -1 74041 74313
ASV43373.1 KY883654_p4 GTP pyrophosphokinase phrog_990 metal-dependent phosphohydrolase other -1 2229 2693
ASV43459.1 KY883654_p90 hypothetical protein singleton unknown function unknown function -1 59690 60295
ASV43380.1 KY883654_p11 hypothetical protein phrog_2586 unknown function unknown function -1 5865 6314
ASV43425.1 KY883654_p56 ribonucleotide reductase of class III (anaerobic), large subunit phrog_4218 anaerobic ribonucleoside reductase large subunit DNA, RNA and nucleotide metabolism -1 30199 31245
ASV43416.1 KY883654_p47 ribonuclease HI phrog_531 Rnase H DNA, RNA and nucleotide metabolism -1 24287 24763
ASV43392.1 KY883654_p23 hypothetical protein phrog_10957 unknown function unknown function -1 11460 11747
ASV43501.1 KY883654_p132 hypothetical protein phrog_1383 virion structural protein head and packaging -1 99388 99951
ASV43428.1 KY883654_p59 hypothetical protein phrog_38658 unknown function unknown function 1 33478 33807
ASV43505.1 KY883654_p136 hypothetical protein phrog_36064 unknown function unknown function -1 101921 102433
ASV43476.1 KY883654_p107 hypothetical protein phrog_16166 unknown function unknown function -1 81065 81313
ASV43465.1 KY883654_p96 tail length tape-measure protein phrog_3779 tail length tape measure protein tail -1 70114 73188
ASV43376.1 KY883654_p7 deoxynucleotide monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other -1 4159 4812
ASV43381.1 KY883654_p12 hypothetical protein singleton unknown function unknown function -1 6396 6785
ASV43447.1 KY883654_p78 DNA polymerase I singleton unknown function unknown function 1 50307 50756
ASV43413.1 KY883654_p44 hypothetical protein phrog_38644 unknown function unknown function -1 23355 23564
ASV43497.1 KY883654_p128 hypothetical protein phrog_35509 unknown function unknown function -1 98187 98426
ASV43510.1 KY883654_p141 hypothetical protein phrog_37195 unknown function unknown function -1 106400 106978
ASV43481.1 KY883654_p112 hypothetical protein phrog_16456 unknown function unknown function 1 85119 86993
ASV43382.1 KY883654_p13 hypothetical protein phrog_1491 tail fiber protein tail -1 7234 7869
ASV43508.1 KY883654_p139 ribose-phosphate pyrophosphokinase phrog_619 ribose-phosphate pyrophosphokinase other -1 104955 105854
ASV43390.1 KY883654_p21 hypothetical protein phrog_36667 unknown function unknown function -1 10819 11184
ASV43374.1 KY883654_p5 hypothetical protein phrog_894 endolysin lysis -1 2781 3164
ASV43441.1 KY883654_p72 hypothetical protein phrog_323 transcriptional regulator, D5-like transcription regulation 1 43761 44528
ASV43394.1 KY883654_p25 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism -1 12046 12501
ASV43379.1 KY883654_p10 hypothetical protein phrog_34366 unknown function unknown function -1 5686 5868
ASV43424.1 KY883654_p55 DNA modification methyltransferase phrog_111 DNA methyltransferase other -1 29699 30202
ASV43500.1 KY883654_p131 hypothetical protein phrog_7819 tail length tape measure protein tail -1 98861 99316
ASV43518.1 KY883654_p149 hypothetical protein singleton unknown function unknown function 1 111319 111435
ASV43502.1 KY883654_p133 hypothetical protein phrog_2087 unknown function unknown function -1 99948 101063
ASV43445.1 KY883654_p76 hypothetical protein singleton unknown function unknown function 1 48841 48954
ASV43492.1 KY883654_p123 hypothetical protein phrog_15257 unknown function unknown function 1 93845 94090
ASV43474.1 KY883654_p105 capsid and scaffold protein phrog_10 major head protein head and packaging -1 79054 80463
ASV43483.1 KY883654_p114 hypothetical protein phrog_22145 unknown function unknown function -1 88016 88291
ASV43507.1 KY883654_p138 hypothetical protein phrog_335 phosphatase other -1 104478 104951
ASV43386.1 KY883654_p17 hypothetical protein phrog_36953 unknown function unknown function -1 9377 9754
ASV43388.1 KY883654_p19 hypothetical protein phrog_28053 unknown function unknown function -1 10071 10343
ASV43495.1 KY883654_p126 hypothetical protein singleton unknown function unknown function -1 97273 97776
ASV43431.1 KY883654_p62 hypothetical protein phrog_31186 unknown function unknown function 1 38182 38475
ASV43503.1 KY883654_p134 hypothetical protein phrog_29327 unknown function unknown function -1 101101 101454
ASV43499.1 KY883654_p130 hypothetical protein phrog_33362 unknown function unknown function -1 98635 98871
ASV43410.1 KY883654_p41 exodeoxyribonuclease VIII phrog_255 exonuclease DNA, RNA and nucleotide metabolism -1 21989 22681
ASV43405.1 KY883654_p36 hypothetical protein singleton unknown function unknown function -1 18001 18186
ASV43494.1 KY883654_p125 hypothetical protein phrog_28145 unknown function unknown function -1 96199 97257
ASV43371.1 KY883654_p2 hypothetical protein phrog_3880 unknown function unknown function -1 751 1053
ASV43480.1 KY883654_p111 hypothetical protein phrog_3802 terminase small subunit head and packaging -1 84496 84972
ASV43384.1 KY883654_p15 hypothetical protein phrog_37007 unknown function unknown function -1 8471 8803
ASV43420.1 KY883654_p51 ribonucleotide reductase of class III (anaerobic), activating protein phrog_626 anaerobic ribonucleotide reductase small subunit DNA, RNA and nucleotide metabolism -1 26148 26624
ASV43475.1 KY883654_p106 capsid and scaffold protein phrog_80 head maturation protease head and packaging -1 80467 81078
ASV43460.1 KY883654_p91 tail fiber protein phrog_14064 tail fiber protein tail -1 60327 63464
ASV43412.1 KY883654_p43 hypothetical protein phrog_16554 unknown function unknown function -1 23093 23377
ASV43430.1 KY883654_p61 hypothetical protein phrog_36125 unknown function unknown function 1 37688 37930
ASV43506.1 KY883654_p137 nicotinamide phosphoribosyltransferase phrog_448 nicotinamide phosphoribosyl transferase other -1 102802 104412
ASV43471.1 KY883654_p102 hypothetical protein phrog_3907 tail terminator connector -1 77210 77695
ASV43375.1 KY883654_p6 holin phrog_860 holin lysis -1 3164 3832
ASV43463.1 KY883654_p94 tail fibers protein phrog_31 central tail fiber J tail -1 66478 69333
ASV43444.1 KY883654_p75 DNA polymerase I phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism 1 46975 48804