| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY926791 |
Definition |
Salmonella phage SE1, complete genome. |
Molecule type |
DNA |
Genome structure |
circular |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; Lederbergvirus; Salmonella virus SE1Spa. |
DB of origin |
NUCCORE |
Length |
60030 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
93 |
%GC |
43.38 |
Number of singletons |
10 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARM70075.1 | KY926791_p20 | hypothetical protein | phrog_206 | head scaffolding protein | head and packaging | -1 | 14827 | 15705 |
| ARM70129.1 | KY926791_p74 | DNA helicase | phrog_16 | DNA helicase | DNA, RNA and nucleotide metabolism | 1 | 41900 | 43903 |
| ARM70087.1 | KY926791_p32 | hypothetical protein | phrog_4049 | unknown function | unknown function | -1 | 22463 | 22903 |
| ARM70104.1 | KY926791_p49 | hypothetical protein | phrog_5321 | unknown function | unknown function | 1 | 29319 | 29588 |
| ARM70080.1 | KY926791_p25 | hypothetical protein | phrog_785 | holin | lysis | -1 | 19842 | 20099 |
| ARM70135.1 | KY926791_p80 | glutamine amidotransferases class-II (GATase) / 7-cyano-7-deazaguanine synthase | phrog_10428 | L-glutamine-D-fructose-6-phosphate aminotransferase | other | 1 | 47448 | 48863 |
| ARM70093.1 | KY926791_p38 | hypothetical protein | phrog_17772 | unknown function | unknown function | 1 | 24968 | 25447 |
| ARM70069.1 | KY926791_p14 | hypothetical protein | phrog_161 | head closure Hc1 | connector | -1 | 11141 | 11515 |
| ARM70126.1 | KY926791_p71 | hypothetical protein | phrog_124 | Sak4-like ssDNA annealing protein | DNA, RNA and nucleotide metabolism | 1 | 39229 | 39975 |
| ARM70074.1 | KY926791_p19 | hypothetical protein | phrog_247 | major head protein | head and packaging | -1 | 13585 | 14688 |
| ARM70091.1 | KY926791_p36 | hypothetical protein | phrog_21392 | unknown function | unknown function | -1 | 23693 | 23980 |
| ARM70059.1 | KY926791_p4 | hypothetical protein | phrog_2048 | tail protein | tail | -1 | 3781 | 4365 |
| ARM70057.1 | KY926791_p2 | tail fiber protein | phrog_31 | central tail fiber J | tail | -1 | 733 | 3372 |
| ARM70116.1 | KY926791_p61 | hypothetical protein | phrog_2993 | unknown function | unknown function | 1 | 34757 | 35065 |
| ARM70121.1 | KY926791_p66 | deoxyuridine 5'-triphosphate nucleotidohydrolase | phrog_135 | dUTPase | DNA, RNA and nucleotide metabolism | 1 | 36310 | 36819 |
| ARM70108.1 | KY926791_p53 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30836 | 31885 |
| ARM70143.1 | KY926791_p88 | hypothetical protein | phrog_7239 | unknown function | unknown function | -1 | 55127 | 55396 |
| ARM70122.1 | KY926791_p67 | hypothetical protein | phrog_32702 | unknown function | unknown function | 1 | 36890 | 37207 |
| ARM70066.1 | KY926791_p11 | hypothetical protein | phrog_290 | minor tail protein | tail | -1 | 9311 | 10255 |
| ARM70106.1 | KY926791_p51 | hypothetical protein | phrog_19703 | unknown function | unknown function | 1 | 30091 | 30327 |
| ARM70095.1 | KY926791_p40 | hypothetical protein | phrog_3199 | unknown function | unknown function | 1 | 25717 | 25965 |
| ARM70133.1 | KY926791_p78 | queuosine biosynthesis protein | phrog_2076 | QueE-like radical SAM domain | moron, auxiliary metabolic gene and host takeover | 1 | 45863 | 46627 |
| ARM70130.1 | KY926791_p75 | hypothetical protein | phrog_24889 | unknown function | unknown function | 1 | 43911 | 44150 |
| ARM70148.1 | KY926791_p93 | hypothetical protein | phrog_2636 | tail fiber protein | tail | -1 | 58358 | 59647 |
| ARM70137.1 | KY926791_p82 | GTP cyclohydrolase I type 1 | phrog_2197 | GTP cyclohydrolase | other | 1 | 49425 | 50024 |
| ARM70081.1 | KY926791_p26 | hypothetical protein | phrog_873 | endolysin | head and packaging | -1 | 20164 | 20598 |
| ARM70062.1 | KY926791_p7 | tail length tape-measure protein 1 | phrog_3519 | tail length tape measure protein | tail | -1 | 6413 | 8221 |
| ARM70138.1 | KY926791_p83 | hypothetical protein | phrog_1035 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 50094 | 50582 |
| ARM70140.1 | KY926791_p85 | hypothetical protein | phrog_947 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | 1 | 51537 | 52529 |
| ARM70077.1 | KY926791_p22 | terminase large subunit | phrog_2 | terminase large subunit | head and packaging | -1 | 17355 | 18953 |
| ARM70102.1 | KY926791_p47 | hypothetical protein | phrog_1972 | unknown function | unknown function | 1 | 28722 | 29108 |
| ARM70118.1 | KY926791_p63 | hypothetical protein | phrog_20894 | unknown function | unknown function | 1 | 35238 | 35513 |
| ARM70094.1 | KY926791_p39 | hypothetical protein | phrog_5461 | unknown function | unknown function | 1 | 25526 | 25711 |
| ARM70123.1 | KY926791_p68 | hypothetical protein | phrog_2480 | unknown function | unknown function | 1 | 37217 | 37642 |
| ARM70128.1 | KY926791_p73 | hypothetical protein | phrog_1990 | Cas4-domain exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40949 | 41899 |
| ARM70131.1 | KY926791_p76 | hypothetical protein | phrog_7864 | unknown function | unknown function | 1 | 44151 | 44873 |
| ARM70060.1 | KY926791_p5 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4582 | 4956 |
| ARM70082.1 | KY926791_p27 | hypothetical protein | phrog_312 | Rz-like spanin | lysis | -1 | 20721 | 21221 |
| ARM70103.1 | KY926791_p48 | hypothetical protein | phrog_18528 | unknown function | unknown function | 1 | 29101 | 29316 |
| ARM70117.1 | KY926791_p62 | hypothetical protein | phrog_11457 | unknown function | unknown function | 1 | 35062 | 35241 |
| ARM70132.1 | KY926791_p77 | hypothetical protein | phrog_11298 | unknown function | unknown function | 1 | 44970 | 45794 |
| ARM70083.1 | KY926791_p28 | hypothetical protein | phrog_19774 | unknown function | unknown function | -1 | 21203 | 21430 |
| ARM70101.1 | KY926791_p46 | hypothetical protein | phrog_17615 | unknown function | unknown function | 1 | 28382 | 28732 |
| ARM70078.1 | KY926791_p23 | hypothetical protein | phrog_5334 | terminase small subunit | head and packaging | -1 | 18922 | 19473 |
| ARM70105.1 | KY926791_p50 | hypothetical protein | phrog_17122 | unknown function | unknown function | 1 | 29604 | 30017 |
| ARM70136.1 | KY926791_p81 | 6-carboxytetrahydropterin synthase | phrog_2389 | QueD-like 6-pyruvoyl-tetrahydropterin synthase | moron, auxiliary metabolic gene and host takeover | 1 | 48865 | 49398 |
| ARM70098.1 | KY926791_p43 | hypothetical protein | singleton | unknown function | unknown function | 1 | 27107 | 27211 |
| ARM70100.1 | KY926791_p45 | hypothetical protein | phrog_16944 | unknown function | unknown function | 1 | 28113 | 28382 |
| ARM70149.1 | KY926791_p1 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 59764 | 60030 |
| ARM70149.1 | KY926791_p1 | hypothetical protein | phrog_1265 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 1 | 699 |
| ARM70114.1 | KY926791_p59 | hypothetical protein | phrog_9414 | unknown function | unknown function | 1 | 34318 | 34527 |
| ARM70063.1 | KY926791_p8 | hypothetical protein | phrog_4966 | unknown function | unknown function | -1 | 8221 | 8559 |
| ARM70096.1 | KY926791_p41 | hypothetical protein | phrog_18706 | unknown function | unknown function | 1 | 25975 | 26139 |
| ARM70058.1 | KY926791_p3 | hypothetical protein | phrog_2134 | unknown function | unknown function | -1 | 3372 | 3806 |
| ARM70085.1 | KY926791_p30 | hypothetical protein | phrog_1040 | peptidase HslV family | other | -1 | 21615 | 22109 |
| ARM70139.1 | KY926791_p84 | hypothetical protein | phrog_887 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 50575 | 51528 |
| ARM70141.1 | KY926791_p86 | hypothetical protein | phrog_99 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 52526 | 53086 |
| ARM70067.1 | KY926791_p12 | hypothetical protein | phrog_179 | tail terminator | connector | -1 | 10258 | 10725 |
| ARM70076.1 | KY926791_p21 | hypothetical protein | phrog_145 | portal protein | head and packaging | -1 | 15816 | 17342 |
| ARM70090.1 | KY926791_p35 | hypothetical protein | singleton | unknown function | unknown function | -1 | 23604 | 23693 |
| ARM70079.1 | KY926791_p24 | hypothetical protein | phrog_16688 | unknown function | unknown function | -1 | 19603 | 19839 |
| ARM70109.1 | KY926791_p54 | hypothetical protein | singleton | unknown function | unknown function | 1 | 31893 | 32888 |
| ARM70125.1 | KY926791_p70 | hypothetical protein | phrog_114 | ATP-dependent DNA ligase | DNA, RNA and nucleotide metabolism | 1 | 38220 | 39164 |
| ARM70084.1 | KY926791_p29 | hypothetical protein | phrog_12090 | unknown function | unknown function | -1 | 21427 | 21618 |
| ARM70112.1 | KY926791_p57 | hypothetical protein | phrog_9346 | unknown function | unknown function | 1 | 33542 | 33739 |
| ARM70092.1 | KY926791_p37 | hypothetical protein | phrog_13865 | unknown function | unknown function | 1 | 24586 | 24891 |
| ARM70061.1 | KY926791_p6 | hypothetical protein | singleton | unknown function | unknown function | -1 | 4959 | 6362 |
| ARM70127.1 | KY926791_p72 | hypothetical protein | phrog_6015 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 39975 | 40886 |
| ARM70110.1 | KY926791_p55 | hypothetical protein | phrog_17131 | unknown function | unknown function | -1 | 32917 | 33147 |
| ARM70113.1 | KY926791_p58 | hypothetical protein | singleton | unknown function | unknown function | 1 | 33754 | 34317 |
| ARM70144.1 | KY926791_p89 | hypothetical protein | phrog_8329 | unknown function | unknown function | -1 | 55393 | 55941 |
| ARM70086.1 | KY926791_p31 | hypothetical protein | phrog_17085 | unknown function | unknown function | -1 | 22106 | 22459 |
| ARM70119.1 | KY926791_p64 | hypothetical protein | phrog_244 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 35700 | 36161 |
| ARM70072.1 | KY926791_p17 | hypothetical protein | phrog_10966 | unknown function | unknown function | -1 | 12361 | 13032 |
| ARM70070.1 | KY926791_p15 | hypothetical protein | phrog_477 | head-tail adaptor Ad1 | connector | -1 | 11512 | 12015 |
| ARM70145.1 | KY926791_p90 | hypothetical protein | phrog_9157 | unknown function | unknown function | -1 | 55958 | 56323 |
| ARM70142.1 | KY926791_p87 | hypothetical protein | phrog_1252 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 53083 | 55056 |
| ARM70065.1 | KY926791_p10 | tail fiber protein | singleton | unknown function | unknown function | -1 | 9073 | 9342 |
| ARM70089.1 | KY926791_p34 | hypothetical protein | phrog_17838 | unknown function | unknown function | -1 | 23242 | 23607 |
| ARM70120.1 | KY926791_p65 | hypothetical protein | phrog_1312 | unknown function | unknown function | 1 | 36174 | 36317 |
| ARM70146.1 | KY926791_p91 | hypothetical protein | phrog_9288 | unknown function | unknown function | -1 | 56389 | 57096 |
| ARM70068.1 | KY926791_p13 | hypothetical protein | phrog_169 | tail completion or Neck1 protein | connector | -1 | 10722 | 11141 |
| ARM70115.1 | KY926791_p60 | hypothetical protein | phrog_18974 | unknown function | unknown function | 1 | 34539 | 34757 |
| ARM70124.1 | KY926791_p69 | hypothetical protein | phrog_531 | Rnase H | DNA, RNA and nucleotide metabolism | 1 | 37643 | 38233 |
| ARM70147.1 | KY926791_p92 | tail fibers protein | phrog_14572 | tail fiber protein | tail | -1 | 57334 | 58398 |
| ARM70088.1 | KY926791_p33 | hypothetical protein | singleton | unknown function | unknown function | -1 | 22903 | 23091 |
| ARM70073.1 | KY926791_p18 | hypothetical protein | phrog_18016 | unknown function | unknown function | -1 | 13102 | 13527 |
| ARM70097.1 | KY926791_p42 | hypothetical protein | phrog_3199 | unknown function | unknown function | 1 | 26208 | 26453 |
| ARM70107.1 | KY926791_p52 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30337 | 30873 |
| ARM70134.1 | KY926791_p79 | hypothetical protein | phrog_18443 | unknown function | unknown function | 1 | 46691 | 47446 |
| ARM70111.1 | KY926791_p56 | hypothetical protein | phrog_17339 | protease | other | 1 | 33246 | 33524 |
| ARM70099.1 | KY926791_p44 | hypothetical protein | phrog_18014 | unknown function | unknown function | 1 | 27491 | 28111 |
| ARM70064.1 | KY926791_p9 | hypothetical protein | phrog_569 | tail length tape measure protein | tail | -1 | 8604 | 9032 |
| ARM70071.1 | KY926791_p16 | hypothetical protein | phrog_17875 | unknown function | unknown function | -1 | 12023 | 12352 |