| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY945355 |
Definition |
Mycobacterium phage Shandong1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus. |
DB of origin |
NUCCORE |
Length |
60618 |
Host Name |
Mycobacterium smegmatis |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
96 |
%GC |
67.46 |
Number of singletons |
4 |
Number of paralogs |
0 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARQ95485.1 | KY945355_p46 | integrase | phrog_1 | integrase | integration and excision | 1 | 33277 | 34377 |
| ARQ95500.1 | KY945355_p61 | hypothetical protein | phrog_2870 | unknown function | unknown function | 1 | 40461 | 40784 |
| ARQ95470.1 | KY945355_p31 | lysin A | phrog_317 | endolysin | lysis | 1 | 24135 | 25736 |
| ARQ95481.1 | KY945355_p42 | hypothetical protein | phrog_9364 | unknown function | unknown function | 1 | 31166 | 31327 |
| ARQ95507.1 | KY945355_p68 | hypothetical protein | phrog_1911 | unknown function | unknown function | 1 | 42903 | 43415 |
| ARQ95472.1 | KY945355_p33 | hypothetical protein | phrog_565 | holin | lysis | 1 | 26609 | 27073 |
| ARQ95459.1 | KY945355_p20 | hypothetical protein | singleton | unknown function | unknown function | -1 | 14693 | 14815 |
| ARQ95461.1 | KY945355_p22 | hypothetical protein | phrog_110 | minor tail protein | tail | 1 | 15941 | 17698 |
| ARQ95506.1 | KY945355_p67 | hypothetical protein | phrog_2388 | unknown function | unknown function | 1 | 42705 | 42818 |
| ARQ95518.1 | KY945355_p79 | hypothetical protein | phrog_5546 | unknown function | unknown function | 1 | 50727 | 50939 |
| ARQ95443.1 | KY945355_p4 | terminase small subunit | phrog_1459 | terminase small subunit | head and packaging | 1 | 783 | 1010 |
| ARQ95441.1 | KY945355_p2 | hypothetical protein | phrog_14141 | unknown function | unknown function | 1 | 352 | 492 |
| ARQ95458.1 | KY945355_p19 | tapemeasure | phrog_971 | endolysin | lysis | 1 | 10644 | 14705 |
| ARQ95465.1 | KY945355_p26 | hypothetical protein | phrog_746 | minor tail protein | tail | 1 | 19656 | 21998 |
| ARQ95528.1 | KY945355_p89 | hypothetical protein | singleton | unknown function | unknown function | 1 | 56240 | 56410 |
| ARQ95479.1 | KY945355_p40 | hypothetical protein | phrog_11692 | unknown function | unknown function | 1 | 29928 | 30119 |
| ARQ95531.1 | KY945355_p92 | hypothetical protein | phrog_4631 | unknown function | unknown function | 1 | 57783 | 58082 |
| ARQ95486.1 | KY945355_p47 | hypothetical protein | phrog_950 | unknown function | unknown function | -1 | 34486 | 35394 |
| ARQ95510.1 | KY945355_p71 | primase | phrog_2478 | DNA polymerase/primase | DNA, RNA and nucleotide metabolism | 1 | 44179 | 46776 |
| ARQ95451.1 | KY945355_p12 | hypothetical protein | phrog_137 | head-tail adaptor Ad1 | connector | 1 | 7503 | 7880 |
| ARQ95477.1 | KY945355_p38 | hypothetical protein | phrog_2311 | HTH DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 29339 | 29647 |
| ARQ95527.1 | KY945355_p88 | hypothetical protein | phrog_16857 | unknown function | unknown function | 1 | 55717 | 55860 |
| ARQ95444.1 | KY945355_p5 | hypothetical protein | phrog_2 | terminase large subunit | head and packaging | 1 | 994 | 2421 |
| ARQ95520.1 | KY945355_p81 | hypothetical protein | phrog_2342 | unknown function | unknown function | 1 | 51594 | 52427 |
| ARQ95533.1 | KY945355_p94 | hypothetical protein | phrog_7081 | unknown function | unknown function | 1 | 58626 | 58979 |
| ARQ95535.1 | KY945355_p96 | hypothetical protein | phrog_747 | unknown function | unknown function | 1 | 59753 | 60064 |
| ARQ95522.1 | KY945355_p83 | hypothetical protein | phrog_5794 | unknown function | unknown function | 1 | 52669 | 53010 |
| ARQ95440.1 | KY945355_p1 | hypothetical protein | phrog_2074 | unknown function | unknown function | 1 | 30 | 284 |
| ARQ95491.1 | KY945355_p52 | hypothetical protein | phrog_6733 | unknown function | unknown function | 1 | 37015 | 37254 |
| ARQ95498.1 | KY945355_p59 | hypothetical protein | phrog_1956 | unknown function | unknown function | 1 | 39610 | 39900 |
| ARQ95526.1 | KY945355_p87 | hypothetical protein | phrog_2493 | unknown function | unknown function | 1 | 55163 | 55720 |
| ARQ95475.1 | KY945355_p36 | hypothetical protein | phrog_284 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 27715 | 28809 |
| ARQ95480.1 | KY945355_p41 | hypothetical protein | phrog_15500 | unknown function | unknown function | 1 | 30234 | 31064 |
| ARQ95460.1 | KY945355_p21 | minor tail subunit | phrog_106 | minor tail protein | tail | 1 | 14805 | 15941 |
| ARQ95487.1 | KY945355_p48 | immunity repressor | phrog_1746 | transcriptional repressor | transcription regulation | -1 | 35483 | 35800 |
| ARQ95466.1 | KY945355_p27 | minor tail protein | phrog_3901 | unknown function | unknown function | 1 | 21999 | 22292 |
| ARQ95476.1 | KY945355_p37 | hypothetical protein | phrog_1042 | unknown function | unknown function | 1 | 28809 | 29036 |
| ARQ95473.1 | KY945355_p34 | hypothetical protein | phrog_404 | minor tail protein | tail | 1 | 27070 | 27432 |
| ARQ95442.1 | KY945355_p3 | hypothetical protein | phrog_2622 | unknown function | unknown function | 1 | 589 | 783 |
| ARQ95523.1 | KY945355_p84 | hypothetical protein | phrog_666 | unknown function | unknown function | 1 | 53024 | 53212 |
| ARQ95512.1 | KY945355_p73 | hypothetical protein | phrog_3478 | unknown function | unknown function | 1 | 47882 | 48307 |
| ARQ95499.1 | KY945355_p60 | DnaQ-like protein | phrog_192 | DNA polymerase exonuclease subunit | DNA, RNA and nucleotide metabolism | 1 | 39913 | 40464 |
| ARQ95508.1 | KY945355_p69 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 43526 | 43765 |
| ARQ95484.1 | KY945355_p45 | hypothetical protein | phrog_66 | excisionase and transcriptional regulator | integration and excision | -1 | 32728 | 32919 |
| ARQ95496.1 | KY945355_p57 | hypothetical protein | phrog_301 | secreted protein | other | 1 | 38974 | 39318 |
| ARQ95495.1 | KY945355_p56 | hypothetical protein | phrog_2781 | unknown function | unknown function | 1 | 38465 | 38977 |
| ARQ95502.1 | KY945355_p63 | hypothetical protein | phrog_3492 | unknown function | unknown function | 1 | 41674 | 41868 |
| ARQ95453.1 | KY945355_p14 | hypothetical protein | phrog_387 | neck protein | connector | 1 | 8235 | 8504 |
| ARQ95517.1 | KY945355_p78 | hypothetical protein | phrog_7658 | unknown function | unknown function | 1 | 50418 | 50666 |
| ARQ95532.1 | KY945355_p93 | hypothetical protein | phrog_12017 | unknown function | unknown function | 1 | 58171 | 58386 |
| ARQ95450.1 | KY945355_p11 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7275 | 7388 |
| ARQ95471.1 | KY945355_p32 | lysin B | phrog_102 | endolysin | lysis | 1 | 25733 | 26596 |
| ARQ95516.1 | KY945355_p77 | hypothetical protein | phrog_1338 | unknown function | unknown function | 1 | 50020 | 50295 |
| ARQ95521.1 | KY945355_p82 | hypothetical protein | phrog_7731 | unknown function | unknown function | 1 | 52424 | 52672 |
| ARQ95525.1 | KY945355_p86 | hypothetical protein | phrog_2822 | unknown function | unknown function | 1 | 54523 | 55170 |
| ARQ95478.1 | KY945355_p39 | hypothetical protein | phrog_4112 | unknown function | unknown function | 1 | 29644 | 29931 |
| ARQ95468.1 | KY945355_p29 | hypothetical protein | phrog_240 | head protein | head and packaging | 1 | 23402 | 23764 |
| ARQ95505.1 | KY945355_p66 | hypothetical protein | phrog_542 | unknown function | unknown function | 1 | 42556 | 42708 |
| ARQ95529.1 | KY945355_p90 | hypothetical protein | phrog_16962 | unknown function | unknown function | 1 | 56496 | 56915 |
| ARQ95483.1 | KY945355_p44 | hypothetical protein | phrog_658 | unknown function | unknown function | -1 | 32387 | 32698 |
| ARQ95513.1 | KY945355_p74 | hypothetical protein | phrog_908 | unknown function | unknown function | 1 | 48304 | 49407 |
| ARQ95449.1 | KY945355_p10 | major capsid protein | phrog_10 | major head protein | head and packaging | 1 | 6461 | 7267 |
| ARQ95445.1 | KY945355_p6 | portal protein | phrog_104 | portal protein | head and packaging | 1 | 2433 | 3995 |
| ARQ95494.1 | KY945355_p55 | hypothetical protein | phrog_472 | WhiB transcriptional factor | transcription regulation | 1 | 38208 | 38468 |
| ARQ95457.1 | KY945355_p18 | tail assembly chaperon | phrog_3656 | tail assembly chaperone | tail | 1 | 10249 | 10644 |
| ARQ95467.1 | KY945355_p28 | hypothetical protein | phrog_416 | minor tail protein | tail | 1 | 22391 | 23317 |
| ARQ95514.1 | KY945355_p75 | hypothetical protein | phrog_549 | unknown function | unknown function | 1 | 49440 | 49790 |
| ARQ95493.1 | KY945355_p54 | hypothetical protein | phrog_2286 | unknown function | unknown function | 1 | 37516 | 38211 |
| ARQ95497.1 | KY945355_p58 | hypothetical protein | phrog_3186 | unknown function | unknown function | 1 | 39315 | 39617 |
| ARQ95511.1 | KY945355_p72 | RusA-like protein | phrog_3055 | RusA-like Holliday junction resolvase | DNA, RNA and nucleotide metabolism | 1 | 47182 | 47889 |
| ARQ95462.1 | KY945355_p23 | hypothetical protein | phrog_1697 | minor tail protein | tail | 1 | 17698 | 18168 |
| ARQ95488.1 | KY945355_p49 | HTH DNA binding protein | phrog_1702 | transcriptional repressor | transcription regulation | 1 | 36105 | 36353 |
| ARQ95469.1 | KY945355_p30 | hypothetical protein | phrog_1540 | unknown function | unknown function | 1 | 23761 | 24138 |
| ARQ95490.1 | KY945355_p51 | hypothetical protein | phrog_2908 | unknown function | unknown function | 1 | 36646 | 36942 |
| ARQ95448.1 | KY945355_p9 | scaffolding protein | phrog_1793 | head scaffolding protein | head and packaging | 1 | 5836 | 6393 |
| ARQ95503.1 | KY945355_p64 | hypothetical protein | phrog_5466 | unknown function | unknown function | 1 | 42093 | 42350 |
| ARQ95519.1 | KY945355_p80 | hypothetical protein | phrog_6045 | unknown function | unknown function | 1 | 51072 | 51491 |
| ARQ95447.1 | KY945355_p8 | hypothetical protein | phrog_1757 | unknown function | unknown function | 1 | 5460 | 5642 |
| ARQ95530.1 | KY945355_p91 | SprT-like protein | phrog_1006 | unknown function | unknown function | 1 | 57088 | 57669 |
| ARQ95464.1 | KY945355_p25 | hypothetical protein | phrog_1736 | minor tail protein | tail | 1 | 19353 | 19655 |
| ARQ95474.1 | KY945355_p35 | hypothetical protein | phrog_1738 | unknown function | unknown function | 1 | 27429 | 27686 |
| ARQ95501.1 | KY945355_p62 | hypothetical protein | phrog_1674 | exonuclease | DNA, RNA and nucleotide metabolism | 1 | 40781 | 41677 |
| ARQ95515.1 | KY945355_p76 | hypothetical protein | phrog_4269 | unknown function | unknown function | 1 | 49790 | 50023 |
| ARQ95454.1 | KY945355_p15 | hypothetical protein | phrog_123 | tail terminator | connector | 1 | 8501 | 8923 |
| ARQ95534.1 | KY945355_p95 | hypothetical protein | singleton | unknown function | unknown function | 1 | 59114 | 59365 |
| ARQ95446.1 | KY945355_p7 | capsid maturation protease | phrog_1752 | head maturation protease | head and packaging | 1 | 3946 | 5463 |
| ARQ95452.1 | KY945355_p13 | hypothetical protein | phrog_763 | head-tail adaptor | connector | 1 | 7880 | 8233 |
| ARQ95492.1 | KY945355_p53 | hypothetical protein | phrog_2654 | unknown function | unknown function | 1 | 37254 | 37424 |
| ARQ95489.1 | KY945355_p50 | HTH DNA binding protein | phrog_1840 | excisionase | integration and excision | 1 | 36350 | 36631 |
| ARQ95524.1 | KY945355_p85 | hypothetical protein | phrog_1075 | tRNA splicing ligase | DNA, RNA and nucleotide metabolism | 1 | 53339 | 54523 |
| ARQ95456.1 | KY945355_p17 | hypothetical protein | phrog_1861 | unknown function | unknown function | 1 | 9806 | 10228 |
| ARQ95509.1 | KY945355_p70 | hypothetical protein | phrog_1571 | HNH endonuclease | DNA, RNA and nucleotide metabolism | 1 | 43765 | 44139 |
| ARQ95482.1 | KY945355_p43 | hypothetical protein | phrog_1279 | queuine tRNA-ribosyltransferase | moron, auxiliary metabolic gene and host takeover | 1 | 31465 | 32343 |
| ARQ95504.1 | KY945355_p65 | hypothetical protein | phrog_1581 | unknown function | unknown function | 1 | 42347 | 42559 |
| ARQ95455.1 | KY945355_p16 | hypothetical protein | phrog_117 | major tail protein | tail | 1 | 9074 | 9685 |
| ARQ95463.1 | KY945355_p24 | minor tail protein | phrog_1565 | minor tail protein | tail | 1 | 18263 | 19345 |