Genomic map of Mycobacterium phage Shandong1 (KY945355)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY945355
Definition
Mycobacterium phage Shandong1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Timquatrovirus; unclassified Timquatrovirus.
DB of origin
NUCCORE
Length
60618
Host Name
Mycobacterium smegmatis
Host domain
Bacteria
Is prophage?
undef
Number of proteins
96
%GC
67.46
Number of singletons
4
Number of paralogs
0

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARQ95485.1 KY945355_p46 integrase phrog_1 integrase integration and excision 1 33277 34377
ARQ95500.1 KY945355_p61 hypothetical protein phrog_2870 unknown function unknown function 1 40461 40784
ARQ95470.1 KY945355_p31 lysin A phrog_317 endolysin lysis 1 24135 25736
ARQ95481.1 KY945355_p42 hypothetical protein phrog_9364 unknown function unknown function 1 31166 31327
ARQ95507.1 KY945355_p68 hypothetical protein phrog_1911 unknown function unknown function 1 42903 43415
ARQ95472.1 KY945355_p33 hypothetical protein phrog_565 holin lysis 1 26609 27073
ARQ95459.1 KY945355_p20 hypothetical protein singleton unknown function unknown function -1 14693 14815
ARQ95461.1 KY945355_p22 hypothetical protein phrog_110 minor tail protein tail 1 15941 17698
ARQ95506.1 KY945355_p67 hypothetical protein phrog_2388 unknown function unknown function 1 42705 42818
ARQ95518.1 KY945355_p79 hypothetical protein phrog_5546 unknown function unknown function 1 50727 50939
ARQ95443.1 KY945355_p4 terminase small subunit phrog_1459 terminase small subunit head and packaging 1 783 1010
ARQ95441.1 KY945355_p2 hypothetical protein phrog_14141 unknown function unknown function 1 352 492
ARQ95458.1 KY945355_p19 tapemeasure phrog_971 endolysin lysis 1 10644 14705
ARQ95465.1 KY945355_p26 hypothetical protein phrog_746 minor tail protein tail 1 19656 21998
ARQ95528.1 KY945355_p89 hypothetical protein singleton unknown function unknown function 1 56240 56410
ARQ95479.1 KY945355_p40 hypothetical protein phrog_11692 unknown function unknown function 1 29928 30119
ARQ95531.1 KY945355_p92 hypothetical protein phrog_4631 unknown function unknown function 1 57783 58082
ARQ95486.1 KY945355_p47 hypothetical protein phrog_950 unknown function unknown function -1 34486 35394
ARQ95510.1 KY945355_p71 primase phrog_2478 DNA polymerase/primase DNA, RNA and nucleotide metabolism 1 44179 46776
ARQ95451.1 KY945355_p12 hypothetical protein phrog_137 head-tail adaptor Ad1 connector 1 7503 7880
ARQ95477.1 KY945355_p38 hypothetical protein phrog_2311 HTH DNA binding protein DNA, RNA and nucleotide metabolism 1 29339 29647
ARQ95527.1 KY945355_p88 hypothetical protein phrog_16857 unknown function unknown function 1 55717 55860
ARQ95444.1 KY945355_p5 hypothetical protein phrog_2 terminase large subunit head and packaging 1 994 2421
ARQ95520.1 KY945355_p81 hypothetical protein phrog_2342 unknown function unknown function 1 51594 52427
ARQ95533.1 KY945355_p94 hypothetical protein phrog_7081 unknown function unknown function 1 58626 58979
ARQ95535.1 KY945355_p96 hypothetical protein phrog_747 unknown function unknown function 1 59753 60064
ARQ95522.1 KY945355_p83 hypothetical protein phrog_5794 unknown function unknown function 1 52669 53010
ARQ95440.1 KY945355_p1 hypothetical protein phrog_2074 unknown function unknown function 1 30 284
ARQ95491.1 KY945355_p52 hypothetical protein phrog_6733 unknown function unknown function 1 37015 37254
ARQ95498.1 KY945355_p59 hypothetical protein phrog_1956 unknown function unknown function 1 39610 39900
ARQ95526.1 KY945355_p87 hypothetical protein phrog_2493 unknown function unknown function 1 55163 55720
ARQ95475.1 KY945355_p36 hypothetical protein phrog_284 exonuclease DNA, RNA and nucleotide metabolism 1 27715 28809
ARQ95480.1 KY945355_p41 hypothetical protein phrog_15500 unknown function unknown function 1 30234 31064
ARQ95460.1 KY945355_p21 minor tail subunit phrog_106 minor tail protein tail 1 14805 15941
ARQ95487.1 KY945355_p48 immunity repressor phrog_1746 transcriptional repressor transcription regulation -1 35483 35800
ARQ95466.1 KY945355_p27 minor tail protein phrog_3901 unknown function unknown function 1 21999 22292
ARQ95476.1 KY945355_p37 hypothetical protein phrog_1042 unknown function unknown function 1 28809 29036
ARQ95473.1 KY945355_p34 hypothetical protein phrog_404 minor tail protein tail 1 27070 27432
ARQ95442.1 KY945355_p3 hypothetical protein phrog_2622 unknown function unknown function 1 589 783
ARQ95523.1 KY945355_p84 hypothetical protein phrog_666 unknown function unknown function 1 53024 53212
ARQ95512.1 KY945355_p73 hypothetical protein phrog_3478 unknown function unknown function 1 47882 48307
ARQ95499.1 KY945355_p60 DnaQ-like protein phrog_192 DNA polymerase exonuclease subunit DNA, RNA and nucleotide metabolism 1 39913 40464
ARQ95508.1 KY945355_p69 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 43526 43765
ARQ95484.1 KY945355_p45 hypothetical protein phrog_66 excisionase and transcriptional regulator integration and excision -1 32728 32919
ARQ95496.1 KY945355_p57 hypothetical protein phrog_301 secreted protein other 1 38974 39318
ARQ95495.1 KY945355_p56 hypothetical protein phrog_2781 unknown function unknown function 1 38465 38977
ARQ95502.1 KY945355_p63 hypothetical protein phrog_3492 unknown function unknown function 1 41674 41868
ARQ95453.1 KY945355_p14 hypothetical protein phrog_387 neck protein connector 1 8235 8504
ARQ95517.1 KY945355_p78 hypothetical protein phrog_7658 unknown function unknown function 1 50418 50666
ARQ95532.1 KY945355_p93 hypothetical protein phrog_12017 unknown function unknown function 1 58171 58386
ARQ95450.1 KY945355_p11 hypothetical protein singleton unknown function unknown function 1 7275 7388
ARQ95471.1 KY945355_p32 lysin B phrog_102 endolysin lysis 1 25733 26596
ARQ95516.1 KY945355_p77 hypothetical protein phrog_1338 unknown function unknown function 1 50020 50295
ARQ95521.1 KY945355_p82 hypothetical protein phrog_7731 unknown function unknown function 1 52424 52672
ARQ95525.1 KY945355_p86 hypothetical protein phrog_2822 unknown function unknown function 1 54523 55170
ARQ95478.1 KY945355_p39 hypothetical protein phrog_4112 unknown function unknown function 1 29644 29931
ARQ95468.1 KY945355_p29 hypothetical protein phrog_240 head protein head and packaging 1 23402 23764
ARQ95505.1 KY945355_p66 hypothetical protein phrog_542 unknown function unknown function 1 42556 42708
ARQ95529.1 KY945355_p90 hypothetical protein phrog_16962 unknown function unknown function 1 56496 56915
ARQ95483.1 KY945355_p44 hypothetical protein phrog_658 unknown function unknown function -1 32387 32698
ARQ95513.1 KY945355_p74 hypothetical protein phrog_908 unknown function unknown function 1 48304 49407
ARQ95449.1 KY945355_p10 major capsid protein phrog_10 major head protein head and packaging 1 6461 7267
ARQ95445.1 KY945355_p6 portal protein phrog_104 portal protein head and packaging 1 2433 3995
ARQ95494.1 KY945355_p55 hypothetical protein phrog_472 WhiB transcriptional factor transcription regulation 1 38208 38468
ARQ95457.1 KY945355_p18 tail assembly chaperon phrog_3656 tail assembly chaperone tail 1 10249 10644
ARQ95467.1 KY945355_p28 hypothetical protein phrog_416 minor tail protein tail 1 22391 23317
ARQ95514.1 KY945355_p75 hypothetical protein phrog_549 unknown function unknown function 1 49440 49790
ARQ95493.1 KY945355_p54 hypothetical protein phrog_2286 unknown function unknown function 1 37516 38211
ARQ95497.1 KY945355_p58 hypothetical protein phrog_3186 unknown function unknown function 1 39315 39617
ARQ95511.1 KY945355_p72 RusA-like protein phrog_3055 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism 1 47182 47889
ARQ95462.1 KY945355_p23 hypothetical protein phrog_1697 minor tail protein tail 1 17698 18168
ARQ95488.1 KY945355_p49 HTH DNA binding protein phrog_1702 transcriptional repressor transcription regulation 1 36105 36353
ARQ95469.1 KY945355_p30 hypothetical protein phrog_1540 unknown function unknown function 1 23761 24138
ARQ95490.1 KY945355_p51 hypothetical protein phrog_2908 unknown function unknown function 1 36646 36942
ARQ95448.1 KY945355_p9 scaffolding protein phrog_1793 head scaffolding protein head and packaging 1 5836 6393
ARQ95503.1 KY945355_p64 hypothetical protein phrog_5466 unknown function unknown function 1 42093 42350
ARQ95519.1 KY945355_p80 hypothetical protein phrog_6045 unknown function unknown function 1 51072 51491
ARQ95447.1 KY945355_p8 hypothetical protein phrog_1757 unknown function unknown function 1 5460 5642
ARQ95530.1 KY945355_p91 SprT-like protein phrog_1006 unknown function unknown function 1 57088 57669
ARQ95464.1 KY945355_p25 hypothetical protein phrog_1736 minor tail protein tail 1 19353 19655
ARQ95474.1 KY945355_p35 hypothetical protein phrog_1738 unknown function unknown function 1 27429 27686
ARQ95501.1 KY945355_p62 hypothetical protein phrog_1674 exonuclease DNA, RNA and nucleotide metabolism 1 40781 41677
ARQ95515.1 KY945355_p76 hypothetical protein phrog_4269 unknown function unknown function 1 49790 50023
ARQ95454.1 KY945355_p15 hypothetical protein phrog_123 tail terminator connector 1 8501 8923
ARQ95534.1 KY945355_p95 hypothetical protein singleton unknown function unknown function 1 59114 59365
ARQ95446.1 KY945355_p7 capsid maturation protease phrog_1752 head maturation protease head and packaging 1 3946 5463
ARQ95452.1 KY945355_p13 hypothetical protein phrog_763 head-tail adaptor connector 1 7880 8233
ARQ95492.1 KY945355_p53 hypothetical protein phrog_2654 unknown function unknown function 1 37254 37424
ARQ95489.1 KY945355_p50 HTH DNA binding protein phrog_1840 excisionase integration and excision 1 36350 36631
ARQ95524.1 KY945355_p85 hypothetical protein phrog_1075 tRNA splicing ligase DNA, RNA and nucleotide metabolism 1 53339 54523
ARQ95456.1 KY945355_p17 hypothetical protein phrog_1861 unknown function unknown function 1 9806 10228
ARQ95509.1 KY945355_p70 hypothetical protein phrog_1571 HNH endonuclease DNA, RNA and nucleotide metabolism 1 43765 44139
ARQ95482.1 KY945355_p43 hypothetical protein phrog_1279 queuine tRNA-ribosyltransferase moron, auxiliary metabolic gene and host takeover 1 31465 32343
ARQ95504.1 KY945355_p65 hypothetical protein phrog_1581 unknown function unknown function 1 42347 42559
ARQ95455.1 KY945355_p16 hypothetical protein phrog_117 major tail protein tail 1 9074 9685
ARQ95463.1 KY945355_p24 minor tail protein phrog_1565 minor tail protein tail 1 18263 19345