Genomic map of Shigella phage SSP1 (KY963424)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY963424
Definition
Shigella phage SSP1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Demerecviridae; Markadamsvirinae; Tequintavirus; Shigella virus SSP1.
DB of origin
NUCCORE
Length
113299
Host Name
Shigella sonnei
Host domain
Bacteria
Is prophage?
undef
Number of proteins
176
%GC
39.07
Number of singletons
15
Number of paralogs
7

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASD50280.1 KY963424_p107 DNA replication primase phrog_47 DNA primase DNA, RNA and nucleotide metabolism -1 69959 70849
ASD50181.1 KY963424_p8 hypothetical protein phrog_1235 unknown function unknown function 1 2117 2302
ASD50209.1 KY963424_p36 hypothetical protein phrog_4804 unknown function unknown function 1 14195 14440
ASD50301.1 KY963424_p128 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 86176 86667
ASD50305.1 KY963424_p132 aerobic ribonucleoside diphosphate reductase small subunit phrog_86 ribonucleoside diphosphate reductase small subunit DNA, RNA and nucleotide metabolism 1 90408 91553
ASD50175.1 KY963424_p2 hypothetical protein phrog_4760 unknown function unknown function 1 279 572
ASD50176.1 KY963424_p3 hypothetical protein phrog_9814 unknown function unknown function 1 572 778
ASD50348.1 KY963424_p175 hypothetical protein phrog_5598 unknown function unknown function 1 112854 113075
ASD50334.1 KY963424_p161 hypothetical protein phrog_5153 unknown function unknown function 1 105517 105723
ASD50271.1 KY963424_p98 flap endonuclease phrog_107 exonuclease DNA, RNA and nucleotide metabolism -1 60025 60855
ASD50289.1 KY963424_p116 hypothetical protein phrog_643 transcriptional regulator transcription regulation -1 76590 76820
ASD50326.1 KY963424_p153 hypothetical protein singleton unknown function unknown function -1 102245 102346
ASD50278.1 KY963424_p105 hypothetical protein phrog_4386 unknown function unknown function -1 66839 67336
ASD50308.1 KY963424_p135 hypothetical protein phrog_26840 unknown function unknown function 1 93022 93405
ASD50248.1 KY963424_p75 hypothetical protein phrog_3802 terminase small subunit head and packaging 1 32944 33426
ASD50241.1 KY963424_p68 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism -1 29527 30024
ASD50194.1 KY963424_p21 Clp protease phrog_1827 ATP-dependent protease other 1 7623 8204
ASD50338.1 KY963424_p165 hypothetical protein phrog_8408 unknown function unknown function 1 107490 107714
ASD50180.1 KY963424_p7 hypothetical protein singleton unknown function unknown function 1 1960 2052
ASD50201.1 KY963424_p28 hypothetical protein phrog_6798 unknown function unknown function 1 10825 11202
ASD50331.1 KY963424_p158 hypothetical protein phrog_6060 anti-termination protein Q-like transcription regulation 1 104978 105163
ASD50317.1 KY963424_p144 metallopeptidase phrog_255 exonuclease DNA, RNA and nucleotide metabolism 1 96741 97364
ASD50207.1 KY963424_p34 hypothetical protein phrog_23542 unknown function unknown function 1 13756 13917
ASD50333.1 KY963424_p160 hypothetical protein phrog_7716 unknown function unknown function 1 105357 105524
ASD50189.1 KY963424_p16 hypothetical protein phrog_4243 unknown function unknown function 1 4957 5637
ASD50239.1 KY963424_p66 hypothetical protein phrog_4576 unknown function unknown function 1 28143 28535
ASD50259.1 KY963424_p86 minor tail protein phrog_3889 base plate tail tube protein tail 1 42301 43185
ASD50306.1 KY963424_p133 dihydrofolate reductase phrog_316 dihydrofolate reductase DNA, RNA and nucleotide metabolism 1 91550 92083
ASD50213.1 KY963424_p40 hypothetical protein phrog_4905 unknown function unknown function 1 15495 15833
ASD50260.1 KY963424_p87 hypothetical protein phrog_313 Tail assembly chaperone tail 1 43182 43586
ASD50242.1 KY963424_p69 hypothetical protein phrog_6447 membrane protein moron, auxiliary metabolic gene and host takeover -1 30011 30229
ASD50243.1 KY963424_p70 membrane protein phrog_5851 unknown function unknown function -1 30222 30416
ASD50336.1 KY963424_p163 hypothetical protein phrog_5032 unknown function unknown function 1 106378 106923
ASD50337.1 KY963424_p164 hypothetical protein phrog_5876 unknown function unknown function 1 107167 107439
ASD50291.1 KY963424_p118 hypothetical protein phrog_5291 unknown function unknown function -1 77586 77819
ASD50178.1 KY963424_p5 hypothetical protein phrog_3909 unknown function unknown function 1 1066 1260
ASD50294.1 KY963424_p121 hypothetical protein phrog_2502 unknown function unknown function -1 81612 82040
ASD50285.1 KY963424_p112 hypothetical protein phrog_8267 unknown function unknown function -1 75107 75295
ASD50193.1 KY963424_p20 deoxynucleoside-5'-monophosphate kinase phrog_139 deoxynucleoside monophosphate kinase other 1 6858 7610
ASD50341.1 KY963424_p168 H-N-H endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 108495 109076
ASD50267.1 KY963424_p94 chaperone of endosialidase phrog_5481 tail fiber protein tail 1 53834 57184
ASD50343.1 KY963424_p170 hypothetical protein phrog_6073 Rz-like spanin lysis 1 109969 110166
ASD50234.1 KY963424_p61 hypothetical protein phrog_4718 unknown function unknown function 1 24863 25066
ASD50244.1 KY963424_p71 hypothetical protein phrog_6369 unknown function unknown function -1 30413 30520
ASD50310.1 KY963424_p137 RNase H phrog_531 Rnase H DNA, RNA and nucleotide metabolism 1 93943 94419
ASD50286.1 KY963424_p113 transcriptional coactivator p15 phrog_4053 transcriptional regulator transcription regulation -1 75381 75689
ASD50322.1 KY963424_p149 cell wall hydrolase phrog_938 endolysin lysis 1 99075 99524
ASD50349.1 KY963424_p176 hypothetical protein phrog_5919 unknown function unknown function 1 113068 113232
ASD50204.1 KY963424_p31 serine/threonine protein phosphatase phrog_547 phosphoesterase other 1 12306 12827
ASD50293.1 KY963424_p120 hypothetical protein phrog_2502 unknown function unknown function -1 81213 81602
ASD50314.1 KY963424_p141 hypothetical protein phrog_2380 unknown function unknown function 1 95882 96097
ASD50188.1 KY963424_p15 hypothetical protein singleton unknown function unknown function 1 4632 4802
ASD50332.1 KY963424_p159 hypothetical protein singleton unknown function unknown function 1 105169 105258
ASD50290.1 KY963424_p117 hypothetical protein phrog_3611 helicase DNA, RNA and nucleotide metabolism -1 76813 77517
ASD50304.1 KY963424_p131 aerobic ribonucleoside diphosphate reductase large subunit phrog_84 ribonucleoside-diphosphate reductase large subunit DNA, RNA and nucleotide metabolism 1 87971 90301
ASD50323.1 KY963424_p150 hypothetical protein phrog_5077 unknown function unknown function 1 99593 99763
ASD50222.1 KY963424_p49 hypothetical protein singleton unknown function unknown function -1 19120 19200
ASD50347.1 KY963424_p174 H-N-H endonuclease phrog_59 HNH endonuclease DNA, RNA and nucleotide metabolism 1 112213 112773
ASD50203.1 KY963424_p30 serine/threonine protein phosphatase phrog_246 NinI-like serine-threonine phosphatase other 1 11455 12306
ASD50185.1 KY963424_p12 hypothetical protein phrog_5486 unknown function unknown function 1 3397 3792
ASD50316.1 KY963424_p143 hypothetical protein phrog_4586 unknown function unknown function 1 96398 96634
ASD50313.1 KY963424_p140 hypothetical protein phrog_4516 unknown function unknown function 1 95302 95817
ASD50263.1 KY963424_p90 hypothetical protein phrog_1302 distal tail protein tail 1 47890 48504
ASD50273.1 KY963424_p100 exonuclease subunit 2 phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism -1 61386 63224
ASD50258.1 KY963424_p85 major tail protein phrog_3575 major tail protein tail 1 40875 42281
ASD50249.1 KY963424_p76 terminase large subunit phrog_2 terminase large subunit head and packaging 1 33426 34742
ASD50233.1 KY963424_p60 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 24343 24684
ASD50335.1 KY963424_p162 hypothetical protein phrog_4551 unknown function unknown function 1 105814 106089
ASD50342.1 KY963424_p169 hypothetical protein phrog_3972 unknown function unknown function 1 109168 109515
ASD50231.1 KY963424_p58 hypothetical protein phrog_5145 unknown function unknown function -1 21932 22162
ASD50187.1 KY963424_p14 hypothetical protein phrog_5265 unknown function unknown function 1 4063 4347
ASD50199.1 KY963424_p26 hypothetical protein phrog_4328 unknown function unknown function 1 10012 10443
ASD50219.1 KY963424_p46 hypothetical protein phrog_5271 unknown function unknown function 1 17222 17836
ASD50272.1 KY963424_p99 hypothetical protein phrog_244 RusA-like Holliday junction resolvase DNA, RNA and nucleotide metabolism -1 60900 61382
ASD50218.1 KY963424_p45 membrane protein phrog_5799 unknown function unknown function 1 17037 17222
ASD50221.1 KY963424_p48 hypothetical protein singleton unknown function unknown function 1 18612 18920
ASD50266.1 KY963424_p93 tail protein phrog_1084 unknown function unknown function 1 53412 53834
ASD50277.1 KY963424_p104 ATP-dependent helicase phrog_16 DNA helicase DNA, RNA and nucleotide metabolism -1 65490 66842
ASD50246.1 KY963424_p73 receptor-blocking protein phrog_1119 Cor superinfection exclusion protein moron, auxiliary metabolic gene and host takeover -1 30824 31090
ASD50225.1 KY963424_p52 hypothetical protein phrog_6973 unknown function unknown function -1 20551 20745
ASD50190.1 KY963424_p17 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 5634 6131
ASD50311.1 KY963424_p138 hypothetical protein phrog_4593 unknown function unknown function 1 94496 94780
ASD50220.1 KY963424_p47 hypothetical protein phrog_13456 unknown function unknown function 1 17836 18177
ASD50344.1 KY963424_p171 hypothetical protein phrog_6221 unknown function unknown function 1 110356 110523
ASD50206.1 KY963424_p33 hypothetical protein phrog_3880 unknown function unknown function 1 13505 13756
ASD50227.1 KY963424_p54 hypothetical protein singleton unknown function unknown function -1 20856 21017
ASD50287.1 KY963424_p114 hypothetical protein phrog_3696 unknown function unknown function -1 75740 76036
ASD50228.1 KY963424_p55 hypothetical protein phrog_4379 unknown function unknown function -1 21019 21363
ASD50216.1 KY963424_p43 hypothetical protein phrog_9887 unknown function unknown function 1 16526 16816
ASD50224.1 KY963424_p51 hypothetical protein phrog_32079 unknown function unknown function -1 19557 19715
ASD50264.1 KY963424_p91 tail protein phrog_31 central tail fiber J tail 1 48501 51350
ASD50328.1 KY963424_p155 hypothetical protein phrog_8119 unknown function unknown function -1 102796 103782
ASD50177.1 KY963424_p4 hypothetical protein phrog_17200 unknown function unknown function 1 875 958
ASD50217.1 KY963424_p44 hypothetical protein phrog_6021 unknown function unknown function 1 16834 17037
ASD50283.1 KY963424_p110 NAD-dependent DNA ligase subunit B phrog_3498 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 73161 73940
ASD50230.1 KY963424_p57 hypothetical protein phrog_5607 unknown function unknown function -1 21702 21881
ASD50297.1 KY963424_p124 hypothetical protein phrog_5827 unknown function unknown function -1 83351 83545
ASD50265.1 KY963424_p92 tail protein phrog_3890 straight fibre tail protein tail 1 51530 53407
ASD50303.1 KY963424_p130 hypothetical protein phrog_5357 tail length tape measure protein tail 1 87607 87849
ASD50192.1 KY963424_p19 membrane lipoprotein phrog_812 Rz-like spanin lysis 1 6505 6858
ASD50174.1 KY963424_p1 hypothetical protein phrog_15108 unknown function unknown function 1 44 211
ASD50245.1 KY963424_p72 hypothetical protein phrog_8596 unknown function unknown function -1 30520 30648
ASD50288.1 KY963424_p115 hypothetical protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism -1 76073 76483
ASD50198.1 KY963424_p25 integron integrase singleton unknown function unknown function 1 9720 9908
ASD50200.1 KY963424_p27 thioredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 10436 10726
ASD50327.1 KY963424_p154 hypothetical protein phrog_7894 unknown function unknown function -1 102358 102774
ASD50211.1 KY963424_p38 hypothetical protein phrog_5967 unknown function unknown function 1 14856 15056
ASD50197.1 KY963424_p24 hypothetical protein singleton unknown function unknown function -1 9648 9782
ASD50253.1 KY963424_p80 prohead protease phrog_80 head maturation protease head and packaging 1 36994 37626
ASD50208.1 KY963424_p35 hypothetical protein phrog_4984 unknown function unknown function 1 13917 14198
ASD50236.1 KY963424_p63 hypothetical protein phrog_1725 DNA binding protein DNA, RNA and nucleotide metabolism 1 25647 26054
ASD50202.1 KY963424_p29 hypothetical protein phrog_7354 major head protein head and packaging 1 11207 11452
ASD50186.1 KY963424_p13 hypothetical protein singleton unknown function unknown function 1 3965 4066
ASD50315.1 KY963424_p142 hypothetical protein phrog_28965 unknown function unknown function 1 96099 96359
ASD50238.1 KY963424_p65 hypothetical protein phrog_1745 DNA transfer protein other 1 26405 28075
ASD50183.1 KY963424_p10 hypothetical protein phrog_2855 unknown function unknown function 1 2833 3105
ASD50321.1 KY963424_p148 hypothetical protein phrog_1479 unknown function unknown function 1 98752 99069
ASD50214.1 KY963424_p41 excinuclease ABC subunit B singleton unknown function unknown function 1 15888 16085
ASD50329.1 KY963424_p156 hypothetical protein phrog_849 DNA primase DNA, RNA and nucleotide metabolism 1 104049 104567
ASD50269.1 KY963424_p96 hypothetical protein phrog_5592 unknown function unknown function -1 59353 59619
ASD50274.1 KY963424_p101 calcineurin-like phosphoesterase superfamily domain protein phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism -1 63205 64098
ASD50261.1 KY963424_p88 hypothetical protein phrog_3914 tail assembly chaperone tail 1 43684 44016
ASD50318.1 KY963424_p145 hypothetical protein phrog_5252 unknown function unknown function 1 97435 97617
ASD50275.1 KY963424_p102 hypothetical protein phrog_1607 single strand DNA binding protein DNA, RNA and nucleotide metabolism -1 64219 64992
ASD50279.1 KY963424_p106 DNA polymerase phrog_17 DNA polymerase DNA, RNA and nucleotide metabolism -1 67329 69896
ASD50281.1 KY963424_p108 replication DNA helicase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism -1 70846 72369
ASD50325.1 KY963424_p152 hypothetical protein phrog_200 lipoprotein other 1 101101 102033
ASD50295.1 KY963424_p122 hypothetical protein phrog_1818 unknown function unknown function -1 82043 82555
ASD50292.1 KY963424_p119 origin of replication binding protein phrog_3712 replication origin binding DNA, RNA and nucleotide metabolism -1 77803 80592
ASD50324.1 KY963424_p151 hypothetical protein phrog_1460 tRNA amidotransferase DNA, RNA and nucleotide metabolism 1 99763 100206
ASD50309.1 KY963424_p136 HNH endonuclease phrog_99 HNH endonuclease DNA, RNA and nucleotide metabolism 1 93398 93946
ASD50184.1 KY963424_p11 hypothetical protein phrog_4821 unknown function unknown function 1 3105 3404
ASD50205.1 KY963424_p32 hypothetical protein phrog_4979 unknown function unknown function 1 12995 13426
ASD50320.1 KY963424_p147 hypothetical protein singleton unknown function unknown function 1 98632 98736
ASD50250.1 KY963424_p77 hypothetical protein phrog_3497 unknown function unknown function 1 34857 35294
ASD50196.1 KY963424_p23 lysozyme phrog_465 endolysin lysis 1 9029 9442
ASD50299.1 KY963424_p126 hypothetical protein phrog_7953 unknown function unknown function -1 83727 84008
ASD50268.1 KY963424_p95 chaperone of endosialidase phrog_12321 tail fiber protein tail 1 57243 59315
ASD50330.1 KY963424_p157 hypothetical protein phrog_10617 unknown function unknown function 1 104780 104968
ASD50339.1 KY963424_p166 hypothetical protein phrog_7042 unknown function unknown function 1 107711 107902
ASD50229.1 KY963424_p56 hypothetical protein phrog_4227 endonuclease nicking abasic sites generated by host uracil glycosylase Ung moron, auxiliary metabolic gene and host takeover -1 21487 21699
ASD50256.1 KY963424_p83 hypothetical protein phrog_3725 tail completion or Neck1 protein connector 1 39592 40359
ASD50257.1 KY963424_p84 hypothetical protein phrog_3907 tail terminator connector 1 40363 40848
ASD50262.1 KY963424_p89 pore forming tail tip protein phrog_3779 tail length tape measure protein tail 1 44100 47780
ASD50340.1 KY963424_p167 hypothetical protein phrog_5473 unknown function unknown function 1 108302 108487
ASD50282.1 KY963424_p109 hypothetical protein phrog_323 transcriptional regulator, D5-like transcription regulation -1 72401 73168
ASD50296.1 KY963424_p123 Sir2 family protein phrog_2162 Sir2 (NAD-dependent deacetylase) DNA, RNA and nucleotide metabolism -1 82536 83351
ASD50298.1 KY963424_p125 hypothetical protein phrog_5236 unknown function unknown function -1 83514 83717
ASD50251.1 KY963424_p78 portal protein phrog_12 portal protein head and packaging 1 35294 36511
ASD50235.1 KY963424_p62 hypothetical protein phrog_3747 unknown function unknown function 1 25297 25548
ASD50237.1 KY963424_p64 hypothetical protein phrog_4820 membrane protein moron, auxiliary metabolic gene and host takeover 1 26110 26307
ASD50223.1 KY963424_p50 phosphate ABC transporter substrate-binding protein singleton unknown function unknown function 1 19175 19330
ASD50254.1 KY963424_p81 capsid family protein phrog_10 major head protein head and packaging 1 37644 39020
ASD50182.1 KY963424_p9 hypothetical protein phrog_5021 unknown function unknown function 1 2361 2756
ASD50210.1 KY963424_p37 hypothetical protein phrog_4731 unknown function unknown function 1 14430 14756
ASD50312.1 KY963424_p139 swarming motility protein phrog_1017 unknown function unknown function 1 94777 95226
ASD50195.1 KY963424_p22 holin singleton unknown function unknown function 1 8826 9032
ASD50284.1 KY963424_p111 NAD-dependent DNA ligase subunit A phrog_3359 NAD-dependent DNA ligase DNA, RNA and nucleotide metabolism -1 74143 75114
ASD50215.1 KY963424_p42 hypothetical protein phrog_4605 unknown function unknown function 1 16087 16533
ASD50226.1 KY963424_p53 hypothetical protein phrog_22819 unknown function unknown function -1 20755 20850
ASD50307.1 KY963424_p134 thymidylate synthase phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 92083 92922
ASD50346.1 KY963424_p173 hypothetical protein phrog_2210 unknown function unknown function 1 111831 112031
ASD50302.1 KY963424_p129 PhoH-like protein phrog_170 PhoH-like phosphate starvation-inducible other 1 86853 87605
ASD50319.1 KY963424_p146 hypothetical protein phrog_1491 tail fiber protein tail 1 97671 98309
ASD50240.1 KY963424_p67 deoxynucleoside-5'-monophosphatase phrog_415 polynucleotide kinase other 1 28616 29350
ASD50247.1 KY963424_p74 receptor-binding tail protein phrog_4815 receptor binding tail protein tail 1 31176 32933
ASD50300.1 KY963424_p127 anaerobic ribonucleoside-triphosphate reductase phrog_487 NrdD-like anaerobic ribonucleotide reductase large subunit moron, auxiliary metabolic gene and host takeover -1 84108 85982
ASD50345.1 KY963424_p172 hypothetical protein singleton unknown function unknown function 1 111621 111695
ASD50252.1 KY963424_p79 hypothetical protein phrog_2973 Hoc-like head decoration head and packaging 1 36508 36990
ASD50191.1 KY963424_p18 hypothetical protein phrog_739 Rz-like spanin lysis 1 6170 6574
ASD50179.1 KY963424_p6 glycine radical protein phrog_1209 unknown function unknown function 1 1303 1671
ASD50212.1 KY963424_p39 hypothetical protein phrog_4215 unknown function unknown function 1 15053 15514
ASD50232.1 KY963424_p59 hypothetical protein phrog_4263 unknown function unknown function -1 22278 23267
ASD50255.1 KY963424_p82 hypothetical protein phrog_442 head-tail adaptor connector 1 39080 39592
ASD50270.1 KY963424_p97 dUTPase phrog_135 dUTPase DNA, RNA and nucleotide metabolism -1 59582 59995
ASD50276.1 KY963424_p103 hypothetical protein phrog_4258 unknown function unknown function -1 64985 65269