| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY979109 |
Definition |
Salmonella phage SHP1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Tevenvirinae; Dhakavirus; unclassified Dhakavirus. |
DB of origin |
NUCCORE |
Length |
62829 |
Host Name |
Salmonella enterica |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
132 |
%GC |
39.26 |
Number of singletons |
6 |
Number of paralogs |
7 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ASJ79404.1 | KY979109_p82 | hypothetical protein | phrog_423 | endonuclease VII | DNA, RNA and nucleotide metabolism | 1 | 34374 | 34847 |
| ASJ79329.1 | KY979109_p7 | site-specific intron-like DNA endonuclease | phrog_139 | deoxynucleoside monophosphate kinase | other | 1 | 3639 | 4400 |
| ASJ79389.1 | KY979109_p67 | hypothetical protein | phrog_1931 | unknown function | unknown function | 1 | 28208 | 28549 |
| ASJ79358.1 | KY979109_p36 | hypothetical protein | phrog_7 | endolysin | lysis | 1 | 15763 | 16257 |
| ASJ79444.1 | KY979109_p122 | ATPase | phrog_19 | DnaB-like replicative helicase | DNA, RNA and nucleotide metabolism | 1 | 56853 | 58283 |
| ASJ79438.1 | KY979109_p116 | AAA domain-containing protein | phrog_1238 | phosphoheptose isomerase | moron, auxiliary metabolic gene and host takeover | 1 | 52777 | 53160 |
| ASJ79370.1 | KY979109_p48 | hypothetical protein | phrog_1323 | endoribonuclease | DNA, RNA and nucleotide metabolism | 1 | 20209 | 20667 |
| ASJ79335.1 | KY979109_p13 | hypothetical protein | phrog_2023 | unknown function | unknown function | 1 | 6014 | 6304 |
| ASJ79398.1 | KY979109_p76 | ATPase | phrog_6756 | unknown function | unknown function | 1 | 33013 | 33174 |
| ASJ79363.1 | KY979109_p41 | hypothetical protein | phrog_2667 | internal head protein | head and packaging | 1 | 18172 | 18471 |
| ASJ79407.1 | KY979109_p85 | hypothetical protein | phrog_2749 | unknown function | unknown function | 1 | 35181 | 35477 |
| ASJ79394.1 | KY979109_p72 | hypothetical protein | phrog_1435 | unknown function | unknown function | 1 | 31180 | 32190 |
| ASJ79452.1 | KY979109_p130 | hypothetical protein | phrog_3249 | unknown function | unknown function | 1 | 60246 | 60437 |
| ASJ79360.1 | KY979109_p38 | hypothetical protein | phrog_5341 | internal virion protein | head and packaging | 1 | 16725 | 17321 |
| ASJ79409.1 | KY979109_p87 | hypothetical protein | phrog_2283 | unknown function | unknown function | 1 | 35835 | 36017 |
| ASJ79418.1 | KY979109_p96 | hypothetical protein | phrog_1169 | unknown function | unknown function | 1 | 38433 | 38663 |
| ASJ79325.1 | KY979109_p3 | base plate wedge protein | phrog_218 | head closure | connector | 1 | 1043 | 1492 |
| ASJ79421.1 | KY979109_p99 | hypothetical protein | phrog_2140 | unknown function | unknown function | 1 | 39219 | 39392 |
| ASJ79396.1 | KY979109_p74 | hypothetical protein | phrog_2052 | unknown function | unknown function | 1 | 32515 | 32751 |
| ASJ79437.1 | KY979109_p115 | hypothetical protein | phrog_4098 | unknown function | unknown function | 1 | 51104 | 52777 |
| ASJ79419.1 | KY979109_p97 | hypothetical protein | phrog_951 | unknown function | unknown function | 1 | 38665 | 38976 |
| ASJ79417.1 | KY979109_p95 | hypothetical protein | phrog_234 | late sigma transcription factor | transcription regulation | 1 | 37892 | 38449 |
| ASJ79446.1 | KY979109_p124 | translational repressor protein | phrog_2102 | Dmd discriminator of mRNA degradation | DNA, RNA and nucleotide metabolism | 1 | 58687 | 58881 |
| ASJ79402.1 | KY979109_p80 | hypothetical protein | phrog_16960 | unknown function | unknown function | 1 | 33769 | 34071 |
| ASJ79441.1 | KY979109_p119 | RNA polymerase binding protein | phrog_3891 | unknown function | unknown function | 1 | 54385 | 55278 |
| ASJ79339.1 | KY979109_p17 | hypothetical protein | phrog_2678 | unknown function | unknown function | 1 | 8073 | 8336 |
| ASJ79355.1 | KY979109_p33 | hypothetical protein | phrog_2203 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 14683 | 15057 |
| ASJ79403.1 | KY979109_p81 | hypothetical protein | phrog_3272 | unknown function | unknown function | 1 | 34068 | 34244 |
| ASJ79449.1 | KY979109_p127 | superinfection immunity protein | phrog_1586 | spackle periplasmic | other | 1 | 59322 | 59615 |
| ASJ79427.1 | KY979109_p105 | hypothetical protein | phrog_1285 | RNA polymerase binding | DNA, RNA and nucleotide metabolism | 1 | 43486 | 43899 |
| ASJ79406.1 | KY979109_p84 | hypothetical protein | phrog_1930 | unknown function | unknown function | 1 | 34969 | 35184 |
| ASJ79330.1 | KY979109_p8 | tail tube protein | phrog_1002 | tail fiber chaperone | tail | 1 | 4393 | 4623 |
| ASJ79399.1 | KY979109_p77 | hypothetical protein | phrog_4203 | unknown function | unknown function | 1 | 33171 | 33479 |
| ASJ79424.1 | KY979109_p102 | hypothetical protein | phrog_2192 | unknown function | unknown function | 1 | 41303 | 41566 |
| ASJ79387.1 | KY979109_p65 | hypothetical protein | phrog_388 | nucleotidyltransferase | DNA, RNA and nucleotide metabolism | 1 | 26110 | 27108 |
| ASJ79327.1 | KY979109_p5 | DNA end protector protein | phrog_655 | homing endonuclease | DNA, RNA and nucleotide metabolism | 1 | 2535 | 2966 |
| ASJ79364.1 | KY979109_p42 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18421 | 18585 |
| ASJ79448.1 | KY979109_p126 | DNA polymerase | phrog_2375 | unknown function | unknown function | 1 | 59089 | 59262 |
| ASJ79411.1 | KY979109_p89 | hypothetical protein | phrog_1774 | unknown function | unknown function | 1 | 36271 | 36564 |
| ASJ79374.1 | KY979109_p52 | hypothetical protein | phrog_2008 | unknown function | unknown function | 1 | 22012 | 22224 |
| ASJ79440.1 | KY979109_p118 | hypothetical protein | phrog_160 | thymidylate synthase | DNA, RNA and nucleotide metabolism | 1 | 53690 | 54388 |
| ASJ79349.1 | KY979109_p27 | hypothetical protein | phrog_7065 | unknown function | unknown function | 1 | 11626 | 11853 |
| ASJ79392.1 | KY979109_p70 | hypothetical protein | singleton | unknown function | unknown function | 1 | 30117 | 30245 |
| ASJ79434.1 | KY979109_p112 | hypothetical protein | phrog_262 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 47390 | 50101 |
| ASJ79433.1 | KY979109_p111 | hypothetical protein | phrog_3826 | unknown function | unknown function | 1 | 47093 | 47308 |
| ASJ79377.1 | KY979109_p55 | endoribonuclease | phrog_6298 | unknown function | unknown function | 1 | 23068 | 23274 |
| ASJ79367.1 | KY979109_p45 | pyrimidine dimer DNA glycosylase | phrog_1986 | unknown function | unknown function | 1 | 19445 | 19663 |
| ASJ79400.1 | KY979109_p78 | hypothetical protein | phrog_2382 | unknown function | unknown function | 1 | 33436 | 33612 |
| ASJ79414.1 | KY979109_p92 | hypothetical protein | phrog_1475 | unknown function | unknown function | 1 | 36973 | 37302 |
| ASJ79388.1 | KY979109_p66 | hypothetical protein | phrog_1250 | unknown function | unknown function | 1 | 27217 | 28197 |
| ASJ79405.1 | KY979109_p83 | hypothetical protein | phrog_3350 | unknown function | unknown function | 1 | 34844 | 34969 |
| ASJ79416.1 | KY979109_p94 | hypothetical protein | singleton | unknown function | unknown function | 1 | 37661 | 37825 |
| ASJ79341.1 | KY979109_p19 | hypothetical protein | phrog_1203 | unknown function | unknown function | 1 | 8869 | 9462 |
| ASJ79432.1 | KY979109_p110 | hypothetical protein | phrog_242 | translation repressor | other | 1 | 46729 | 47091 |
| ASJ79372.1 | KY979109_p50 | hypothetical protein | phrog_1256 | valyl tRNA synthetase modifier | DNA, RNA and nucleotide metabolism | 1 | 21220 | 21576 |
| ASJ79362.1 | KY979109_p40 | lysozyme | phrog_1183 | endonuclease V N-glycosylase UV repair enzyme | DNA, RNA and nucleotide metabolism | 1 | 17713 | 18129 |
| ASJ79380.1 | KY979109_p58 | valyl-tRNA synthetase modifier | phrog_10363 | unknown function | unknown function | 1 | 24128 | 24364 |
| ASJ79439.1 | KY979109_p117 | AAA domain-containing protein | phrog_761 | thymidylate kinase | other | 1 | 53157 | 53693 |
| ASJ79379.1 | KY979109_p57 | endoribonuclease | phrog_858 | starvation-inducible transcriptional regulator | transcription regulation | 1 | 23647 | 24030 |
| ASJ79428.1 | KY979109_p106 | hypothetical protein | phrog_223 | DNA polymerase processivity factor | DNA, RNA and nucleotide metabolism | 1 | 43925 | 44623 |
| ASJ79412.1 | KY979109_p90 | hypothetical protein | phrog_1871 | unknown function | unknown function | 1 | 36572 | 36703 |
| ASJ79442.1 | KY979109_p120 | sliding clamp protein | phrog_97 | UvsX-like recombinase | other | 1 | 55356 | 56537 |
| ASJ79352.1 | KY979109_p30 | hypothetical protein | phrog_2141 | unknown function | unknown function | 1 | 12516 | 13475 |
| ASJ79334.1 | KY979109_p12 | hypothetical protein | phrog_1411 | unknown function | unknown function | 1 | 5633 | 6013 |
| ASJ79369.1 | KY979109_p47 | hypothetical protein | phrog_2037 | unknown function | unknown function | 1 | 19938 | 20147 |
| ASJ79353.1 | KY979109_p31 | hypothetical protein | phrog_6001 | unknown function | unknown function | 1 | 13554 | 13766 |
| ASJ79378.1 | KY979109_p56 | endoribonuclease | phrog_1246 | lysis inhibition | lysis | 1 | 23367 | 23660 |
| ASJ79347.1 | KY979109_p25 | hypothetical protein | phrog_899 | unknown function | unknown function | 1 | 11188 | 11397 |
| ASJ79391.1 | KY979109_p69 | hypothetical protein | phrog_2257 | unknown function | unknown function | 1 | 29195 | 30040 |
| ASJ79366.1 | KY979109_p44 | hypothetical protein | phrog_2049 | unknown function | unknown function | 1 | 19159 | 19452 |
| ASJ79351.1 | KY979109_p29 | hypothetical protein | phrog_3723 | unknown function | unknown function | 1 | 12257 | 12496 |
| ASJ79346.1 | KY979109_p24 | hypothetical protein | phrog_4882 | unknown function | unknown function | 1 | 10981 | 11178 |
| ASJ79356.1 | KY979109_p34 | hypothetical protein | phrog_2900 | unknown function | unknown function | 1 | 15054 | 15290 |
| ASJ79429.1 | KY979109_p107 | hypothetical protein | phrog_314 | homing endonuclease | DNA, RNA and nucleotide metabolism | 1 | 44623 | 45189 |
| ASJ79359.1 | KY979109_p37 | hypothetical protein | phrog_15461 | unknown function | unknown function | 1 | 16307 | 16642 |
| ASJ79397.1 | KY979109_p75 | nucleotidyltransferase | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 32753 | 33016 |
| ASJ79431.1 | KY979109_p109 | hypothetical protein | phrog_225 | clamp loader of DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 46150 | 46722 |
| ASJ79331.1 | KY979109_p9 | hypothetical protein | phrog_755 | RNA ligase | DNA, RNA and nucleotide metabolism | 1 | 4623 | 5078 |
| ASJ79345.1 | KY979109_p23 | hypothetical protein | phrog_899 | unknown function | unknown function | 1 | 10693 | 10971 |
| ASJ79354.1 | KY979109_p32 | hypothetical protein | phrog_1843 | unknown function | unknown function | 1 | 13781 | 14470 |
| ASJ79443.1 | KY979109_p121 | hypothetical protein | phrog_999 | head vertex assembly chaperone | head and packaging | 1 | 56530 | 56859 |
| ASJ79435.1 | KY979109_p113 | hypothetical protein | phrog_1039 | immunity to superinfection | moron, auxiliary metabolic gene and host takeover | 1 | 50165 | 50401 |
| ASJ79451.1 | KY979109_p129 | nucleotidyltransferase | phrog_3272 | unknown function | unknown function | 1 | 60050 | 60271 |
| ASJ79373.1 | KY979109_p51 | hypothetical protein | phrog_335 | phosphatase | other | 1 | 21573 | 22040 |
| ASJ79328.1 | KY979109_p6 | site-specific intron-like DNA endonuclease | phrog_45 | tail tube | tail | 1 | 3049 | 3639 |
| ASJ79408.1 | KY979109_p86 | glutaredoxin | phrog_22 | thioredoxin domain | DNA, RNA and nucleotide metabolism | 1 | 35458 | 35775 |
| ASJ79390.1 | KY979109_p68 | hypothetical protein | phrog_2274 | unknown function | unknown function | 1 | 28607 | 29131 |
| ASJ79343.1 | KY979109_p21 | hypothetical protein | phrog_2330 | unknown function | unknown function | 1 | 10040 | 10393 |
| ASJ79333.1 | KY979109_p11 | hypothetical protein | phrog_1692 | unknown function | unknown function | 1 | 5446 | 5631 |
| ASJ79376.1 | KY979109_p54 | hypothetical protein | phrog_592 | thymidine kinase | other | 1 | 22416 | 22988 |
| ASJ79436.1 | KY979109_p114 | recombination endonuclease subunit-containing protein | phrog_1754 | unknown function | unknown function | 1 | 50543 | 51043 |
| ASJ79453.1 | KY979109_p131 | hypothetical protein | phrog_1823 | unknown function | unknown function | 1 | 60454 | 60615 |
| ASJ79450.1 | KY979109_p128 | hypothetical protein | singleton | unknown function | unknown function | 1 | 59830 | 60048 |
| ASJ79332.1 | KY979109_p10 | hypothetical protein | phrog_8765 | internal virion protein | head and packaging | 1 | 5151 | 5375 |
| ASJ79447.1 | KY979109_p125 | hypothetical protein | phrog_13952 | unknown function | unknown function | 1 | 58882 | 59022 |
| ASJ79340.1 | KY979109_p18 | hypothetical protein | phrog_8232 | unknown function | unknown function | 1 | 8395 | 8793 |
| ASJ79386.1 | KY979109_p64 | hypothetical protein | phrog_944 | membrane protein | moron, auxiliary metabolic gene and host takeover | 1 | 25649 | 26101 |
| ASJ79381.1 | KY979109_p59 | hypothetical protein | phrog_653 | unknown function | unknown function | 1 | 24369 | 24551 |
| ASJ79348.1 | KY979109_p26 | hypothetical protein | phrog_899 | unknown function | unknown function | 1 | 11408 | 11632 |
| ASJ79395.1 | KY979109_p73 | hypothetical protein | phrog_1474 | unknown function | unknown function | 1 | 32187 | 32528 |
| ASJ79423.1 | KY979109_p101 | hypothetical protein | phrog_100 | SbcD-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 40284 | 41306 |
| ASJ79422.1 | KY979109_p100 | hypothetical protein | phrog_314 | homing endonuclease | DNA, RNA and nucleotide metabolism | 1 | 39433 | 40287 |
| ASJ79410.1 | KY979109_p88 | hypothetical protein | phrog_4968 | unknown function | unknown function | 1 | 36014 | 36268 |
| ASJ79336.1 | KY979109_p14 | hypothetical protein | phrog_2290 | unknown function | unknown function | 1 | 6301 | 6777 |
| ASJ79337.1 | KY979109_p15 | hypothetical protein | singleton | unknown function | unknown function | 1 | 7333 | 7539 |
| ASJ79357.1 | KY979109_p35 | hypothetical protein | phrog_1185 | nudix hydrolase | other | 1 | 15349 | 15732 |
| ASJ79415.1 | KY979109_p93 | recombination endonuclease VII | phrog_1662 | unknown function | unknown function | 1 | 37299 | 37565 |
| ASJ79326.1 | KY979109_p4 | head completion protein | phrog_429 | DNA end protector | DNA, RNA and nucleotide metabolism | 1 | 1489 | 2316 |
| ASJ79338.1 | KY979109_p16 | hypothetical protein | phrog_2280 | unknown function | unknown function | 1 | 7473 | 7949 |
| ASJ79382.1 | KY979109_p60 | hypothetical protein | phrog_12165 | unknown function | unknown function | 1 | 24577 | 24672 |
| ASJ79361.1 | KY979109_p39 | NUDIX domain-containing protein | phrog_7857 | internal virion protein | head and packaging | 1 | 17350 | 17652 |
| ASJ79425.1 | KY979109_p103 | hypothetical protein | phrog_77 | SbcC-like subunit of palindrome specific endonuclease | DNA, RNA and nucleotide metabolism | 1 | 41553 | 43235 |
| ASJ79342.1 | KY979109_p20 | hypothetical protein | phrog_8788 | unknown function | unknown function | 1 | 9511 | 10053 |
| ASJ79413.1 | KY979109_p91 | hypothetical protein | phrog_2084 | unknown function | unknown function | 1 | 36704 | 36904 |
| ASJ79385.1 | KY979109_p63 | thymidine kinase | phrog_1502 | unknown function | unknown function | 1 | 25078 | 25638 |
| ASJ79365.1 | KY979109_p43 | IpIII internal head protein | phrog_1488 | unknown function | unknown function | 1 | 18665 | 19159 |
| ASJ79454.1 | KY979109_p132 | thymidylate synthase | phrog_47 | DNA primase | DNA, RNA and nucleotide metabolism | 1 | 60654 | 61682 |
| ASJ79324.1 | KY979109_p2 | base plate wedge protein | phrog_232 | baseplate wedge subunit | tail | -1 | 394 | 900 |
| ASJ79445.1 | KY979109_p123 | clamp loader subunit DNA polymerase | phrog_2110 | unknown function | unknown function | 1 | 58369 | 58686 |
| ASJ79344.1 | KY979109_p22 | hypothetical protein | phrog_899 | unknown function | unknown function | 1 | 10390 | 10680 |
| ASJ79393.1 | KY979109_p71 | hypothetical protein | phrog_2351 | unknown function | unknown function | 1 | 30247 | 31122 |
| ASJ79350.1 | KY979109_p28 | hypothetical protein | phrog_9796 | unknown function | unknown function | 1 | 11884 | 12213 |
| ASJ79383.1 | KY979109_p61 | hypothetical protein | phrog_4844 | unknown function | unknown function | 1 | 24672 | 24881 |
| ASJ79420.1 | KY979109_p98 | hypothetical protein | phrog_1648 | unknown function | unknown function | 1 | 38960 | 39160 |
| ASJ79401.1 | KY979109_p79 | hypothetical protein | phrog_9092 | inhibitor of host Lon protease | other | 1 | 33596 | 33769 |
| ASJ79375.1 | KY979109_p53 | hypothetical protein | phrog_653 | unknown function | unknown function | 1 | 22221 | 22406 |
| ASJ79368.1 | KY979109_p46 | hypothetical protein | phrog_717 | unknown function | unknown function | 1 | 19660 | 19938 |
| ASJ79430.1 | KY979109_p108 | hypothetical protein | phrog_168 | clamp loader of DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 45182 | 46159 |
| ASJ79323.1 | KY979109_p1 | OB domain-containing protein | singleton | unknown function | unknown function | -1 | 14 | 394 |
| ASJ79426.1 | KY979109_p104 | hypothetical protein | phrog_1045 | unknown function | unknown function | 1 | 43232 | 43423 |
| ASJ79384.1 | KY979109_p62 | thymidine kinase | phrog_2758 | unknown function | unknown function | 1 | 24885 | 25067 |
| ASJ79371.1 | KY979109_p49 | hypothetical protein | phrog_600 | unknown function | unknown function | 1 | 20680 | 21219 |