Genomic map of Salmonella phage SHP1 (KY979109)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY979109
Definition
Salmonella phage SHP1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Tevenvirinae; Dhakavirus; unclassified Dhakavirus.
DB of origin
NUCCORE
Length
62829
Host Name
Salmonella enterica
Host domain
Bacteria
Is prophage?
undef
Number of proteins
132
%GC
39.26
Number of singletons
6
Number of paralogs
7

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ASJ79404.1 KY979109_p82 hypothetical protein phrog_423 endonuclease VII DNA, RNA and nucleotide metabolism 1 34374 34847
ASJ79329.1 KY979109_p7 site-specific intron-like DNA endonuclease phrog_139 deoxynucleoside monophosphate kinase other 1 3639 4400
ASJ79389.1 KY979109_p67 hypothetical protein phrog_1931 unknown function unknown function 1 28208 28549
ASJ79358.1 KY979109_p36 hypothetical protein phrog_7 endolysin lysis 1 15763 16257
ASJ79444.1 KY979109_p122 ATPase phrog_19 DnaB-like replicative helicase DNA, RNA and nucleotide metabolism 1 56853 58283
ASJ79438.1 KY979109_p116 AAA domain-containing protein phrog_1238 phosphoheptose isomerase moron, auxiliary metabolic gene and host takeover 1 52777 53160
ASJ79370.1 KY979109_p48 hypothetical protein phrog_1323 endoribonuclease DNA, RNA and nucleotide metabolism 1 20209 20667
ASJ79335.1 KY979109_p13 hypothetical protein phrog_2023 unknown function unknown function 1 6014 6304
ASJ79398.1 KY979109_p76 ATPase phrog_6756 unknown function unknown function 1 33013 33174
ASJ79363.1 KY979109_p41 hypothetical protein phrog_2667 internal head protein head and packaging 1 18172 18471
ASJ79407.1 KY979109_p85 hypothetical protein phrog_2749 unknown function unknown function 1 35181 35477
ASJ79394.1 KY979109_p72 hypothetical protein phrog_1435 unknown function unknown function 1 31180 32190
ASJ79452.1 KY979109_p130 hypothetical protein phrog_3249 unknown function unknown function 1 60246 60437
ASJ79360.1 KY979109_p38 hypothetical protein phrog_5341 internal virion protein head and packaging 1 16725 17321
ASJ79409.1 KY979109_p87 hypothetical protein phrog_2283 unknown function unknown function 1 35835 36017
ASJ79418.1 KY979109_p96 hypothetical protein phrog_1169 unknown function unknown function 1 38433 38663
ASJ79325.1 KY979109_p3 base plate wedge protein phrog_218 head closure connector 1 1043 1492
ASJ79421.1 KY979109_p99 hypothetical protein phrog_2140 unknown function unknown function 1 39219 39392
ASJ79396.1 KY979109_p74 hypothetical protein phrog_2052 unknown function unknown function 1 32515 32751
ASJ79437.1 KY979109_p115 hypothetical protein phrog_4098 unknown function unknown function 1 51104 52777
ASJ79419.1 KY979109_p97 hypothetical protein phrog_951 unknown function unknown function 1 38665 38976
ASJ79417.1 KY979109_p95 hypothetical protein phrog_234 late sigma transcription factor transcription regulation 1 37892 38449
ASJ79446.1 KY979109_p124 translational repressor protein phrog_2102 Dmd discriminator of mRNA degradation DNA, RNA and nucleotide metabolism 1 58687 58881
ASJ79402.1 KY979109_p80 hypothetical protein phrog_16960 unknown function unknown function 1 33769 34071
ASJ79441.1 KY979109_p119 RNA polymerase binding protein phrog_3891 unknown function unknown function 1 54385 55278
ASJ79339.1 KY979109_p17 hypothetical protein phrog_2678 unknown function unknown function 1 8073 8336
ASJ79355.1 KY979109_p33 hypothetical protein phrog_2203 membrane protein moron, auxiliary metabolic gene and host takeover 1 14683 15057
ASJ79403.1 KY979109_p81 hypothetical protein phrog_3272 unknown function unknown function 1 34068 34244
ASJ79449.1 KY979109_p127 superinfection immunity protein phrog_1586 spackle periplasmic other 1 59322 59615
ASJ79427.1 KY979109_p105 hypothetical protein phrog_1285 RNA polymerase binding DNA, RNA and nucleotide metabolism 1 43486 43899
ASJ79406.1 KY979109_p84 hypothetical protein phrog_1930 unknown function unknown function 1 34969 35184
ASJ79330.1 KY979109_p8 tail tube protein phrog_1002 tail fiber chaperone tail 1 4393 4623
ASJ79399.1 KY979109_p77 hypothetical protein phrog_4203 unknown function unknown function 1 33171 33479
ASJ79424.1 KY979109_p102 hypothetical protein phrog_2192 unknown function unknown function 1 41303 41566
ASJ79387.1 KY979109_p65 hypothetical protein phrog_388 nucleotidyltransferase DNA, RNA and nucleotide metabolism 1 26110 27108
ASJ79327.1 KY979109_p5 DNA end protector protein phrog_655 homing endonuclease DNA, RNA and nucleotide metabolism 1 2535 2966
ASJ79364.1 KY979109_p42 hypothetical protein singleton unknown function unknown function -1 18421 18585
ASJ79448.1 KY979109_p126 DNA polymerase phrog_2375 unknown function unknown function 1 59089 59262
ASJ79411.1 KY979109_p89 hypothetical protein phrog_1774 unknown function unknown function 1 36271 36564
ASJ79374.1 KY979109_p52 hypothetical protein phrog_2008 unknown function unknown function 1 22012 22224
ASJ79440.1 KY979109_p118 hypothetical protein phrog_160 thymidylate synthase DNA, RNA and nucleotide metabolism 1 53690 54388
ASJ79349.1 KY979109_p27 hypothetical protein phrog_7065 unknown function unknown function 1 11626 11853
ASJ79392.1 KY979109_p70 hypothetical protein singleton unknown function unknown function 1 30117 30245
ASJ79434.1 KY979109_p112 hypothetical protein phrog_262 DNA polymerase DNA, RNA and nucleotide metabolism 1 47390 50101
ASJ79433.1 KY979109_p111 hypothetical protein phrog_3826 unknown function unknown function 1 47093 47308
ASJ79377.1 KY979109_p55 endoribonuclease phrog_6298 unknown function unknown function 1 23068 23274
ASJ79367.1 KY979109_p45 pyrimidine dimer DNA glycosylase phrog_1986 unknown function unknown function 1 19445 19663
ASJ79400.1 KY979109_p78 hypothetical protein phrog_2382 unknown function unknown function 1 33436 33612
ASJ79414.1 KY979109_p92 hypothetical protein phrog_1475 unknown function unknown function 1 36973 37302
ASJ79388.1 KY979109_p66 hypothetical protein phrog_1250 unknown function unknown function 1 27217 28197
ASJ79405.1 KY979109_p83 hypothetical protein phrog_3350 unknown function unknown function 1 34844 34969
ASJ79416.1 KY979109_p94 hypothetical protein singleton unknown function unknown function 1 37661 37825
ASJ79341.1 KY979109_p19 hypothetical protein phrog_1203 unknown function unknown function 1 8869 9462
ASJ79432.1 KY979109_p110 hypothetical protein phrog_242 translation repressor other 1 46729 47091
ASJ79372.1 KY979109_p50 hypothetical protein phrog_1256 valyl tRNA synthetase modifier DNA, RNA and nucleotide metabolism 1 21220 21576
ASJ79362.1 KY979109_p40 lysozyme phrog_1183 endonuclease V N-glycosylase UV repair enzyme DNA, RNA and nucleotide metabolism 1 17713 18129
ASJ79380.1 KY979109_p58 valyl-tRNA synthetase modifier phrog_10363 unknown function unknown function 1 24128 24364
ASJ79439.1 KY979109_p117 AAA domain-containing protein phrog_761 thymidylate kinase other 1 53157 53693
ASJ79379.1 KY979109_p57 endoribonuclease phrog_858 starvation-inducible transcriptional regulator transcription regulation 1 23647 24030
ASJ79428.1 KY979109_p106 hypothetical protein phrog_223 DNA polymerase processivity factor DNA, RNA and nucleotide metabolism 1 43925 44623
ASJ79412.1 KY979109_p90 hypothetical protein phrog_1871 unknown function unknown function 1 36572 36703
ASJ79442.1 KY979109_p120 sliding clamp protein phrog_97 UvsX-like recombinase other 1 55356 56537
ASJ79352.1 KY979109_p30 hypothetical protein phrog_2141 unknown function unknown function 1 12516 13475
ASJ79334.1 KY979109_p12 hypothetical protein phrog_1411 unknown function unknown function 1 5633 6013
ASJ79369.1 KY979109_p47 hypothetical protein phrog_2037 unknown function unknown function 1 19938 20147
ASJ79353.1 KY979109_p31 hypothetical protein phrog_6001 unknown function unknown function 1 13554 13766
ASJ79378.1 KY979109_p56 endoribonuclease phrog_1246 lysis inhibition lysis 1 23367 23660
ASJ79347.1 KY979109_p25 hypothetical protein phrog_899 unknown function unknown function 1 11188 11397
ASJ79391.1 KY979109_p69 hypothetical protein phrog_2257 unknown function unknown function 1 29195 30040
ASJ79366.1 KY979109_p44 hypothetical protein phrog_2049 unknown function unknown function 1 19159 19452
ASJ79351.1 KY979109_p29 hypothetical protein phrog_3723 unknown function unknown function 1 12257 12496
ASJ79346.1 KY979109_p24 hypothetical protein phrog_4882 unknown function unknown function 1 10981 11178
ASJ79356.1 KY979109_p34 hypothetical protein phrog_2900 unknown function unknown function 1 15054 15290
ASJ79429.1 KY979109_p107 hypothetical protein phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism 1 44623 45189
ASJ79359.1 KY979109_p37 hypothetical protein phrog_15461 unknown function unknown function 1 16307 16642
ASJ79397.1 KY979109_p75 nucleotidyltransferase phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 32753 33016
ASJ79431.1 KY979109_p109 hypothetical protein phrog_225 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 46150 46722
ASJ79331.1 KY979109_p9 hypothetical protein phrog_755 RNA ligase DNA, RNA and nucleotide metabolism 1 4623 5078
ASJ79345.1 KY979109_p23 hypothetical protein phrog_899 unknown function unknown function 1 10693 10971
ASJ79354.1 KY979109_p32 hypothetical protein phrog_1843 unknown function unknown function 1 13781 14470
ASJ79443.1 KY979109_p121 hypothetical protein phrog_999 head vertex assembly chaperone head and packaging 1 56530 56859
ASJ79435.1 KY979109_p113 hypothetical protein phrog_1039 immunity to superinfection moron, auxiliary metabolic gene and host takeover 1 50165 50401
ASJ79451.1 KY979109_p129 nucleotidyltransferase phrog_3272 unknown function unknown function 1 60050 60271
ASJ79373.1 KY979109_p51 hypothetical protein phrog_335 phosphatase other 1 21573 22040
ASJ79328.1 KY979109_p6 site-specific intron-like DNA endonuclease phrog_45 tail tube tail 1 3049 3639
ASJ79408.1 KY979109_p86 glutaredoxin phrog_22 thioredoxin domain DNA, RNA and nucleotide metabolism 1 35458 35775
ASJ79390.1 KY979109_p68 hypothetical protein phrog_2274 unknown function unknown function 1 28607 29131
ASJ79343.1 KY979109_p21 hypothetical protein phrog_2330 unknown function unknown function 1 10040 10393
ASJ79333.1 KY979109_p11 hypothetical protein phrog_1692 unknown function unknown function 1 5446 5631
ASJ79376.1 KY979109_p54 hypothetical protein phrog_592 thymidine kinase other 1 22416 22988
ASJ79436.1 KY979109_p114 recombination endonuclease subunit-containing protein phrog_1754 unknown function unknown function 1 50543 51043
ASJ79453.1 KY979109_p131 hypothetical protein phrog_1823 unknown function unknown function 1 60454 60615
ASJ79450.1 KY979109_p128 hypothetical protein singleton unknown function unknown function 1 59830 60048
ASJ79332.1 KY979109_p10 hypothetical protein phrog_8765 internal virion protein head and packaging 1 5151 5375
ASJ79447.1 KY979109_p125 hypothetical protein phrog_13952 unknown function unknown function 1 58882 59022
ASJ79340.1 KY979109_p18 hypothetical protein phrog_8232 unknown function unknown function 1 8395 8793
ASJ79386.1 KY979109_p64 hypothetical protein phrog_944 membrane protein moron, auxiliary metabolic gene and host takeover 1 25649 26101
ASJ79381.1 KY979109_p59 hypothetical protein phrog_653 unknown function unknown function 1 24369 24551
ASJ79348.1 KY979109_p26 hypothetical protein phrog_899 unknown function unknown function 1 11408 11632
ASJ79395.1 KY979109_p73 hypothetical protein phrog_1474 unknown function unknown function 1 32187 32528
ASJ79423.1 KY979109_p101 hypothetical protein phrog_100 SbcD-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 40284 41306
ASJ79422.1 KY979109_p100 hypothetical protein phrog_314 homing endonuclease DNA, RNA and nucleotide metabolism 1 39433 40287
ASJ79410.1 KY979109_p88 hypothetical protein phrog_4968 unknown function unknown function 1 36014 36268
ASJ79336.1 KY979109_p14 hypothetical protein phrog_2290 unknown function unknown function 1 6301 6777
ASJ79337.1 KY979109_p15 hypothetical protein singleton unknown function unknown function 1 7333 7539
ASJ79357.1 KY979109_p35 hypothetical protein phrog_1185 nudix hydrolase other 1 15349 15732
ASJ79415.1 KY979109_p93 recombination endonuclease VII phrog_1662 unknown function unknown function 1 37299 37565
ASJ79326.1 KY979109_p4 head completion protein phrog_429 DNA end protector DNA, RNA and nucleotide metabolism 1 1489 2316
ASJ79338.1 KY979109_p16 hypothetical protein phrog_2280 unknown function unknown function 1 7473 7949
ASJ79382.1 KY979109_p60 hypothetical protein phrog_12165 unknown function unknown function 1 24577 24672
ASJ79361.1 KY979109_p39 NUDIX domain-containing protein phrog_7857 internal virion protein head and packaging 1 17350 17652
ASJ79425.1 KY979109_p103 hypothetical protein phrog_77 SbcC-like subunit of palindrome specific endonuclease DNA, RNA and nucleotide metabolism 1 41553 43235
ASJ79342.1 KY979109_p20 hypothetical protein phrog_8788 unknown function unknown function 1 9511 10053
ASJ79413.1 KY979109_p91 hypothetical protein phrog_2084 unknown function unknown function 1 36704 36904
ASJ79385.1 KY979109_p63 thymidine kinase phrog_1502 unknown function unknown function 1 25078 25638
ASJ79365.1 KY979109_p43 IpIII internal head protein phrog_1488 unknown function unknown function 1 18665 19159
ASJ79454.1 KY979109_p132 thymidylate synthase phrog_47 DNA primase DNA, RNA and nucleotide metabolism 1 60654 61682
ASJ79324.1 KY979109_p2 base plate wedge protein phrog_232 baseplate wedge subunit tail -1 394 900
ASJ79445.1 KY979109_p123 clamp loader subunit DNA polymerase phrog_2110 unknown function unknown function 1 58369 58686
ASJ79344.1 KY979109_p22 hypothetical protein phrog_899 unknown function unknown function 1 10390 10680
ASJ79393.1 KY979109_p71 hypothetical protein phrog_2351 unknown function unknown function 1 30247 31122
ASJ79350.1 KY979109_p28 hypothetical protein phrog_9796 unknown function unknown function 1 11884 12213
ASJ79383.1 KY979109_p61 hypothetical protein phrog_4844 unknown function unknown function 1 24672 24881
ASJ79420.1 KY979109_p98 hypothetical protein phrog_1648 unknown function unknown function 1 38960 39160
ASJ79401.1 KY979109_p79 hypothetical protein phrog_9092 inhibitor of host Lon protease other 1 33596 33769
ASJ79375.1 KY979109_p53 hypothetical protein phrog_653 unknown function unknown function 1 22221 22406
ASJ79368.1 KY979109_p46 hypothetical protein phrog_717 unknown function unknown function 1 19660 19938
ASJ79430.1 KY979109_p108 hypothetical protein phrog_168 clamp loader of DNA polymerase DNA, RNA and nucleotide metabolism 1 45182 46159
ASJ79323.1 KY979109_p1 OB domain-containing protein singleton unknown function unknown function -1 14 394
ASJ79426.1 KY979109_p104 hypothetical protein phrog_1045 unknown function unknown function 1 43232 43423
ASJ79384.1 KY979109_p62 thymidine kinase phrog_2758 unknown function unknown function 1 24885 25067
ASJ79371.1 KY979109_p49 hypothetical protein phrog_600 unknown function unknown function 1 20680 21219