Genomic map of Clostridium phage CPS1 (KY996523)


functional categories (each PHROG annotation is associated to a category)             Notes   
 
head and packaging     DNA, RNA and nucleotide metabolism     transcription regulation             - one track for each strand
connector integration and excision moron, auxiliary metabolic gene and host takeover             - Mouse over proteins to see their ID and annotations
tail lysis other             - Scroll to zoom
unknown function             - Click on a protein to see its PHROG






More about this genome

Locus
KY996523
Definition
Clostridium phage CPS1, complete genome.
Molecule type
DNA
Genome structure
linear
Taxonomy
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae.
DB of origin
NUCCORE
Length
19089
Host Name
Clostridium perfringens
Host domain
Bacteria
Is prophage?
undef
Number of proteins
25
%GC
28.25
Number of singletons
4
Number of paralogs
1

   List of proteins encoded in this genome

NCBI prot ID PHROG prot ID NCBI prot annotation PHROG number PHROG annotation PHROG category Strand Start End
ARW58301.1 KY996523_p11 major capsid protein phrog_2006 major head protein head and packaging 1 6557 7657
ARW58314.1 KY996523_p24 hypothetical protein singleton unknown function unknown function -1 18217 18573
ARW58295.1 KY996523_p5 hypothetical protein phrog_28144 unknown function unknown function 1 1101 1820
ARW58315.1 KY996523_p25 hypothetical protein singleton unknown function unknown function -1 18763 18918
ARW58293.1 KY996523_p3 hypothetical protein phrog_28736 unknown function unknown function 1 760 915
ARW58308.1 KY996523_p18 collar protein phrog_5472 lower collar tail 1 13168 13872
ARW58304.1 KY996523_p14 tail fibers protein phrog_16740 tail protein tail 1 10211 11458
ARW58299.1 KY996523_p9 hypothetical protein phrog_28166 unknown function unknown function 1 5915 6151
ARW58297.1 KY996523_p7 DNA packaging ATPase phrog_2150 terminase head and packaging 1 4152 5174
ARW58311.1 KY996523_p21 hypothetical protein phrog_17212 pre-neck appendage protein connector 1 15552 17375
ARW58294.1 KY996523_p4 hypothetical protein phrog_29355 unknown function unknown function 1 923 1132
ARW58305.1 KY996523_p15 N-acetylmuramoyl-L-alanine amidase phrog_435 endolysin lysis 1 11462 12103
ARW58303.1 KY996523_p13 membrane protein phrog_16615 peptidase other 1 8655 10214
ARW58302.1 KY996523_p12 capsid and scaffold protein phrog_2006 major head protein head and packaging 1 7670 8662
ARW58312.1 KY996523_p22 hypothetical protein phrog_29298 unknown function unknown function -1 17389 17736
ARW58306.1 KY996523_p16 hypothetical protein phrog_4898 holin lysis 1 12103 12276
ARW58310.1 KY996523_p20 hypothetical protein phrog_11541 unknown function unknown function 1 14144 15562
ARW58300.1 KY996523_p10 hypothetical protein phrog_29684 unknown function unknown function 1 6298 6552
ARW58292.1 KY996523_p2 hypothetical protein singleton unknown function unknown function 1 436 612
ARW58313.1 KY996523_p23 hypothetical protein singleton unknown function unknown function -1 17740 17919
ARW58291.1 KY996523_p1 hypothetical protein phrog_918 unknown function unknown function 1 171 419
ARW58296.1 KY996523_p6 DNA polymerase phrog_1907 DNA polymerase DNA, RNA and nucleotide metabolism 1 1841 4150
ARW58309.1 KY996523_p19 hypothetical protein phrog_29468 unknown function unknown function 1 13884 14144
ARW58298.1 KY996523_p8 hypothetical protein phrog_14578 single strand DNA binding protein DNA, RNA and nucleotide metabolism 1 5280 5861
ARW58307.1 KY996523_p17 collar protein phrog_2038 upper collar connector connector 1 12306 13175