| functional categories (each PHROG annotation is associated to a category) | Notes | ||
| head and packaging | DNA, RNA and nucleotide metabolism | transcription regulation | - one track for each strand |
| connector | integration and excision | moron, auxiliary metabolic gene and host takeover | - Mouse over proteins to see their ID and annotations |
| tail | lysis | other | - Scroll to zoom |
| unknown function | - Click on a protein to see its PHROG | ||
Locus |
KY996523 |
Definition |
Clostridium phage CPS1, complete genome. |
Molecule type |
DNA |
Genome structure |
linear |
Taxonomy |
Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Podoviridae; unclassified Podoviridae. |
DB of origin |
NUCCORE |
Length |
19089 |
Host Name |
Clostridium perfringens |
Host domain |
Bacteria |
Is prophage? |
undef |
Number of proteins |
25 |
%GC |
28.25 |
Number of singletons |
4 |
Number of paralogs |
1 |
| NCBI prot ID | PHROG prot ID | NCBI prot annotation | PHROG number | PHROG annotation | PHROG category | Strand | Start | End |
|---|---|---|---|---|---|---|---|---|
| ARW58301.1 | KY996523_p11 | major capsid protein | phrog_2006 | major head protein | head and packaging | 1 | 6557 | 7657 |
| ARW58314.1 | KY996523_p24 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18217 | 18573 |
| ARW58295.1 | KY996523_p5 | hypothetical protein | phrog_28144 | unknown function | unknown function | 1 | 1101 | 1820 |
| ARW58315.1 | KY996523_p25 | hypothetical protein | singleton | unknown function | unknown function | -1 | 18763 | 18918 |
| ARW58293.1 | KY996523_p3 | hypothetical protein | phrog_28736 | unknown function | unknown function | 1 | 760 | 915 |
| ARW58308.1 | KY996523_p18 | collar protein | phrog_5472 | lower collar | tail | 1 | 13168 | 13872 |
| ARW58304.1 | KY996523_p14 | tail fibers protein | phrog_16740 | tail protein | tail | 1 | 10211 | 11458 |
| ARW58299.1 | KY996523_p9 | hypothetical protein | phrog_28166 | unknown function | unknown function | 1 | 5915 | 6151 |
| ARW58297.1 | KY996523_p7 | DNA packaging ATPase | phrog_2150 | terminase | head and packaging | 1 | 4152 | 5174 |
| ARW58311.1 | KY996523_p21 | hypothetical protein | phrog_17212 | pre-neck appendage protein | connector | 1 | 15552 | 17375 |
| ARW58294.1 | KY996523_p4 | hypothetical protein | phrog_29355 | unknown function | unknown function | 1 | 923 | 1132 |
| ARW58305.1 | KY996523_p15 | N-acetylmuramoyl-L-alanine amidase | phrog_435 | endolysin | lysis | 1 | 11462 | 12103 |
| ARW58303.1 | KY996523_p13 | membrane protein | phrog_16615 | peptidase | other | 1 | 8655 | 10214 |
| ARW58302.1 | KY996523_p12 | capsid and scaffold protein | phrog_2006 | major head protein | head and packaging | 1 | 7670 | 8662 |
| ARW58312.1 | KY996523_p22 | hypothetical protein | phrog_29298 | unknown function | unknown function | -1 | 17389 | 17736 |
| ARW58306.1 | KY996523_p16 | hypothetical protein | phrog_4898 | holin | lysis | 1 | 12103 | 12276 |
| ARW58310.1 | KY996523_p20 | hypothetical protein | phrog_11541 | unknown function | unknown function | 1 | 14144 | 15562 |
| ARW58300.1 | KY996523_p10 | hypothetical protein | phrog_29684 | unknown function | unknown function | 1 | 6298 | 6552 |
| ARW58292.1 | KY996523_p2 | hypothetical protein | singleton | unknown function | unknown function | 1 | 436 | 612 |
| ARW58313.1 | KY996523_p23 | hypothetical protein | singleton | unknown function | unknown function | -1 | 17740 | 17919 |
| ARW58291.1 | KY996523_p1 | hypothetical protein | phrog_918 | unknown function | unknown function | 1 | 171 | 419 |
| ARW58296.1 | KY996523_p6 | DNA polymerase | phrog_1907 | DNA polymerase | DNA, RNA and nucleotide metabolism | 1 | 1841 | 4150 |
| ARW58309.1 | KY996523_p19 | hypothetical protein | phrog_29468 | unknown function | unknown function | 1 | 13884 | 14144 |
| ARW58298.1 | KY996523_p8 | hypothetical protein | phrog_14578 | single strand DNA binding protein | DNA, RNA and nucleotide metabolism | 1 | 5280 | 5861 |
| ARW58307.1 | KY996523_p17 | collar protein | phrog_2038 | upper collar connector | connector | 1 | 12306 | 13175 |